2024-05-03 13:38:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_457724 1059 bp mRNA linear PLN 20-APR-2018 DEFINITION Debaryomyces hansenii CBS767 DEHA2C01034p (DEHA2C01034g), partial mRNA. ACCESSION XM_457724 VERSION XM_457724.1 DBLINK BioProject: PRJNA12410 BioSample: SAMEA3138183 KEYWORDS RefSeq. SOURCE Debaryomyces hansenii CBS767 ORGANISM Debaryomyces hansenii CBS767 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Debaryomyces. REFERENCE 1 (bases 1 to 1059) AUTHORS Dujon,B., Sherman,D., Fischer,G., Durrens,P., Casaregola,S., Lafontaine,I., De Montigny,J., Marck,C., Neuveglise,C., Talla,E., Goffard,N., Frangeul,L., Aigle,M., Anthouard,V., Babour,A., Barbe,V., Barnay,S., Blanchin,S., Beckerich,J.M., Beyne,E., Bleykasten,C., Boisrame,A., Boyer,J., Cattolico,L., Confanioleri,F., De Daruvar,A., Despons,L., Fabre,E., Fairhead,C., Ferry-Dumazet,H., Groppi,A., Hantraye,F., Hennequin,C., Jauniaux,N., Joyet,P., Kachouri,R., Kerrest,A., Koszul,R., Lemaire,M., Lesur,I., Ma,L., Muller,H., Nicaud,J.M., Nikolski,M., Oztas,S., Ozier-Kalogeropoulos,O., Pellenz,S., Potier,S., Richard,G.F., Straub,M.L., Suleau,A., Swennen,D., Tekaia,F., Wesolowski-Louvel,M., Westhof,E., Wirth,B., Zeniou-Meyer,M., Zivanovic,I., Bolotin-Fukuhara,M., Thierry,A., Bouchier,C., Caudron,B., Scarpelli,C., Gaillardin,C., Weissenbach,J., Wincker,P. and Souciet,J.L. TITLE Genome evolution in yeasts JOURNAL Nature 430 (6995), 35-44 (2004) PUBMED 15229592 REFERENCE 2 (bases 1 to 1059) AUTHORS Casaregola,S., Val,M.E., Neuveglise,C., Talla,E., Martin,T., Durrens,P., Barbe,V., Bleykasten,C., Bon,E., Despons,L., Fritsch,E., Groppi,A., Iragne,F., Jauniaux,N., Leh,V., de Montigny,J., Pottier,S., Straub,M.L., Wirth,B., Wincker,P., Sherman,D.J., Gaillardin,C. and Souciet,J.L. TITLE The second release of the complete genome of Debaryomyces hansenii type strain CBS767 JOURNAL Unpublished REFERENCE 3 (bases 1 to 1059) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-APR-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 4 (bases 1 to 1059) AUTHORS Genoscope -,C.E.A. TITLE Direct Submission JOURNAL Submitted (10-SEP-2008) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_006045). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1059 /organism="Debaryomyces hansenii CBS767" /mol_type="mRNA" /strain="CBS767" /type_material="culture from type material of Saccharomyces hansenii" /db_xref="taxon:284592" /chromosome="C" gene <1..>1059 /locus_tag="DEHA2C01034g" /db_xref="GeneID:2900579" CDS 1..1059 /locus_tag="DEHA2C01034g" /note="similar to uniprot|Q96V44 Trichoderma reesei L-arabinitol 4-dehydrogenase (EC 1.1.1.12)" /codon_start=1 /transl_table=12 /product="DEHA2C01034p" /protein_id="XP_457724.2" /db_xref="GeneID:2900579" /db_xref="GOA:Q6BVP5" /db_xref="InterPro:IPR002085" /db_xref="InterPro:IPR002328" /db_xref="InterPro:IPR011032" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR013154" /db_xref="InterPro:IPR016040" /db_xref="UniProtKB/TrEMBL:Q6BVP5" /translation="
MTTKQNIGVFTNPKHELYVTEIDTPQAADLTEDEVLVHVKCTGICGSDIHFQKHGCIGPTMVVEGEHILGHESSGEILAVGNKVTNLKTGDKVALEPGVPCKSCKACLTGKYNGCEKVLFSSTPPVAGFLRRYIKHPAQFCHKINSLTYQQGALLEPLSVSYCGVRHIGLQLGQSVLVCGAGPIGYVTAKCAESAGAFPIVVTDIEQSKLDFIKKEIPSVTTVLVTGSLQENLKKVASATESFDVAIDCTGVEPSLELATHALDFGGKLHIIGVGREFQKFPFMILSVKEIHVTFQYRYANTWPTVVKLMQAGIINLDKLITHSFALEDAEEAFKLAADPKSGAMKIIIEDA"
misc_feature 40..1053 /locus_tag="DEHA2C01034g" /note="Sorbitol dehydrogenase; Region: sorbitol_DH; cd05285" /db_xref="CDD:176188" misc_feature order(133..135,139..141,151..153,169..171,181..183, 211..213,358..360,367..369,466..468,820..822,889..894) /locus_tag="DEHA2C01034g" /note="inhibitor binding site [active]" /db_xref="CDD:176188" misc_feature order(133..135,139..141,211..216,466..468) /locus_tag="DEHA2C01034g" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176188" misc_feature order(301..303,310..312,319..321,343..345) /locus_tag="DEHA2C01034g" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176188" misc_feature order(478..480,544..552,607..615,625..627,673..675, 745..750,754..756,814..822,886..894) /locus_tag="DEHA2C01034g" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:176188" misc_feature order(484..486,517..519,523..525,571..573,580..588, 592..594,619..621,670..672,712..714,913..915,922..927, 934..936) /locus_tag="DEHA2C01034g" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176188" ORIGIN
atgaccaccaaacaaaatattggggttttcacaaatccaaaacacgaactttacgtcacagaaattgatactccacaagctgcggatcttacagaggatgaagtattagtccatgtcaaatgtacaggtatctgtggttcagacattcactttcaaaagcatggatgtataggaccaactatggtggtcgagggcgaacatatattagggcacgaatcgtctggggaaattttggctgtgggtaacaaagttaccaatttaaaaacaggtgacaaggttgctcttgaaccgggtgttccatgcaaatcttgtaaggcctgcttaaccggtaaatataatggatgcgagaaagtgttgttctcctctactccccctgtggcagggtttttgagaagatacatcaagcatccagctcaattttgtcacaagatcaattctctcacctatcagcaaggtgctctcttggaacctctctcagttctgtactgtggagtgagacatattggacttcaattaggacaatcagtacttgtatgtggggcaggtcctattggttatgtaacggcaaaatgtgcggaactggctggagcgttcccaatcgttgtaactgatattgaacagtctaaacttgactttattaaaaaggaaatcccaagcgtcaccactgttcttgttactggctctttacaagaaaacttaaaaaaggtagcatctgcgacagagagcttcgatgttgccattgattgcacaggtgtagagccatcactcgagcttgcaacacatgcccttgatttcggcggaaaattacatatcatcggggttggtagagagttccaaaaattcccttttatgatcttgtctgttaaggaaattcatgtaactttccaatatagatatgccaacacctggcctactgttgtaaagttgatgcaagcaggcatcattaatttagacaaattgattacccattcatttgcattagaggatgccgaagaggcctttaagttagcagctgaccccaagtcaggggcgatgaaaattattatcgaagatgcataa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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