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2021-10-17 15:42:28, GGRNA.v2 : RefSeq release 207 (Jul, 2021)

LOCUS       XM_234465               5878 bp    mRNA    linear   ROD 21-JAN-2021
DEFINITION  PREDICTED: Rattus norvegicus NRDE-2, necessary for RNA
            interference, domain containing (Nrde2), transcript variant X1,
            mRNA.
ACCESSION   XM_234465
VERSION     XM_234465.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_234465.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Rattus norvegicus Annotation Release
                                           108
            Annotation Version          :: 108
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5878
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5878
                     /gene="Nrde2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 ESTs, 1 long SRA read, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 194 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:314381"
                     /db_xref="RGD:1565082"
     CDS             210..3707
                     /gene="Nrde2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2"
                     /protein_id="XP_234465.5"
                     /db_xref="GeneID:314381"
                     /db_xref="RGD:1565082"
                     /translation="
MALFPAFAGVSEASGDGASRKELDWLSNPSFRVGNLTSLSRQTEEVPALASEASPLTRSPLKSELSDESDTNEKLTQISKKKKKEKKKKRKHQHHKKTKRRHEQSSSSGSGSDTEAGKDRASRSIRDSQESEKARQGSNAVPAAPATGHSSIWLEDIYTLTDVFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGASAAKKHSHRHLERYFTKKNVALLRTEGIAVCSNPEPSSSEPAPFIPVKDSADVATPVTTWLNPLGIYDQSTTQWLQGQGPAEPELKQPDSQQERDSAALKARVEEFNRRVRENPRDTQLWMAFVAFQDEVMRSPGIYALGEGEQEKHRKSLKLLLEKKLAVLERAIESNPSSVELKLAKLQLCSEFWEPSALTKEWQKLLFLHPNNTSLWQRYLSFCQSQFGTFSVSKLHSLYGKCLSTLSAVKDGSMLSHPVLPGTEEAMFGLFLQQCHFLRQAGHSEKVVSLFQAMVDFTFFKPDSVKELPTKVQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVLVNPDEDDEEPEEEDQEIKDKTLPRWQIWLAMERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDVGQSLIRLSSPDLQFQLIEAFLQFLGVPSGFLPPASCLYLAMDESSIFESKLYDEKPLTYFNPLFSGISCVGYMEQLDCPRWTKGHNREGEEFVRNVFHLVLPLFSGKQKCQLCLSWLRYEIAKVIWCLHTKKKRLKSQGKNCKKLAKSLLKEPENRNNLCLWRQYAHLEWLLGNTEDARKVLDAALSMAGSSDLKDRELCELSLLYAELEVELSPDSRGATTGRAVHVLTRLTESSPCGPYTGQVSSTQVLKARKAYEHALQDCLGQSCASSPPTAESLDCLGSLVKCFMLFQYLTVGIDAAVQVYRQVFSKLEGSALLEGPGPEDSASSQSVTSVLEAVTLMHTSLLRFHMNICVYPLAPLRETLSDALKLYPGNQGLWRAYVQIQNKSHSANKTRRFFDTVTRSAKHLEPWLFAIEAEKLRKRLVESVQRVGGREVHATIPETGLTHRIRALFENAIRSDQGGQCPLLWRMYLKFLVSLGNKERSKGVFYKALQSCPWAKVLYMDAVEYFPEELQEILDVMTEKELRVRLPLEELELLLED"
     misc_feature    1152..2150
                     /gene="Nrde2"
                     /note="NRDE-2, necessary for RNA interference; Region:
                     NRDE-2; pfam08424"
                     /db_xref="CDD:285605"
ORIGIN      
gcacaaggaaacagctctttcccggcctcacttttttcccctcctcccctctctaccctttgggtctcggcaccacctaacccagggttaagccccatcgggtgctcagaactacatttcccagagggcttcgcgagtcagcgtcctccaatcagagctctccagacggcgccatttctgtggcggaagtggtggtgcggcctgtgatcatggcgctgttcccggccttcgcgggcgtaagtgaggcctccggtgatggagcatccaggaaagagttagactggctgagcaacccaagctttcgtgttggaaatctcacgtctctgagccgacaaactgaagaggtcccggcccttgcttctgaagcgtcaccactgacaaggagtccgttgaagtcagagctctcagatgagagtgacactaatgagaagctcacacagataagcaagaaaaagaagaaagagaaaaagaagaaaaggaaacaccagcaccacaagaaaaccaagaggagacacgagcagtcgagcagcagtgggtccgggtcagacacagaggctgggaaggacagggcttcccgaagtatcagggatagccaagagtctgagaaagcccgtcaaggaagtaatgctgttcctgctgctcctgctactggacatagctccatttggctggaagatatttacactctgacagacgtcttcaggacagataagaaaccagatcctgccaactgggagtataaatctctgtatcgtggggatatagcaaggtacaagaggaagggagactcctgcctgggtatcaaccctaagaagcagtgtatatcttgggaaggggcttctgcagcaaagaagcactcacacagacacctggagcgctattttaccaagaagaatgtggcattgttacgaactgaggggattgccgtgtgcagtaaccctgagccctcctcctctgagccagccccattcatcccagtgaaggactctgccgatgtggctactcctgttacaacatggctgaatcctctgggcatttatgatcagtctaccacacagtggttacaagggcagggtccagcagagccagagttaaagcagccagactcacagcaggagagggacagtgctgctcttaaggccagagtggaagagtttaacaggagagttcgggaaaaccctcgggacacgcagctatggatggcattcgtggctttccaggatgaagtcatgaggagtcctggcatctatgctcttggggaaggagagcaggagaagcacaggaagtccctgaagctcctcctggagaagaagctggctgtactggagcgggccatcgagagcaacccaagcagcgtggagctgaagctcgccaagttgcagctgtgctcagaattctgggagcctagtgcgctgaccaaggagtggcagaagctcctcttcctgcaccccaacaacacaagcctgtggcagcgctatctctccttttgccagagtcagtttggcaccttttctgtgtccaaactccacagtctatatggcaagtgcttgagtaccttgtctgctgttaaagacggcagcatgttatcccaccctgtgttgccgggcactgaggaggccatgtttgggctctttcttcagcagtgccactttctacggcaggctggccactcggagaaggtcgtctctctgttccaggccatggttgacttcaccttcttcaagcctgacagtgtgaaagagctgcccacaaaagtgcaggtggaattctttgaacccttctgggacagcggagagccccgtgttggggagaagggagcccgaggctggcgggcgtggatgcaccagcaggagcgtggtggctgggtgcttgtcaacccagatgaggatgacgaggagccggaagaagaggaccaagagataaaagacaagaccctgcccaggtggcagatctggcttgctatggaacgttctcgagaccagaggcactggcgtccctggcgccctgataagaccaagaagcaaacggaggaagactgtgaggaccccgagagacaggtgctgtttgatgacgttgggcaatctttgatcagactttccagcccagatcttcagttccagctcattgaggcctttctgcagttcctgggtgtaccttctggcttccttcccccagcctcctgcctttatctggccatggacgagagtagcatctttgagagtaaactttatgatgaaaagcccttgacttacttcaaccctttattttctggcattagctgtgtgggctacatggaacagttggattgtcctcgctggaccaaaggtcacaaccgagagggcgaggagtttgtccgcaatgtcttccacctggtgctgcctctgttctcaggcaagcagaagtgccagctctgcctctcttggttacggtacgagattgccaaggtcatttggtgtctacacactaaaaagaagagattgaagtctcagggaaagaactgcaaaaagctagccaagagtctcctcaaggagccagaaaaccgcaacaacctctgcctctggaggcagtatgcacacctggagtggttgctcggcaacacagaggatgccagaaaggtgttggatgcagccctcagcatggcaggcagcagcgacctgaaggaccgggagctctgtgagctcagtctgctctatgctgagctggaggtagagctgtctcctgactcgagaggagccaccacaggccgtgccgtccacgtactaactcggctgacggagagcagcccctgtgggccctacactgggcaggtctcgtccactcaggttctgaaagcccggaaggcttatgagcatgcgctgcaggactgtctgggacagagctgtgcctccagcccacctactgcagagtcgttggactgcctgggtagcctggtcaaatgcttcatgctcttccagtatttgactgtaggaattgacgctgctgtgcaggtgtacagacaggtgttttccaagctggagggctctgctctcctggaaggcccggggccagaggacagtgccagctcccagagtgtgaccagtgttctcgaggccgtcaccctgatgcacacaagcctgctgcgattccacatgaacatttgtgtgtaccctctggctccactccgagagaccctctcagacgctttaaagctgtatccaggcaaccagggtctttggagggcttacgtgcagattcagaataagtcccacagtgctaacaagaccagaagattctttgacacagtcactaggtctgccaagcatttggagccttggctgtttgcaatcgaagctgagaagctgaggaaaaggctggtggaatctgttcagagggtaggtggcagggaggtccatgctacaatccccgagactggtcttacgcatcggatcagagctttgtttgaaaatgcaatccggagcgaccagggtggccagtgcccgctgctgtggaggatgtatttgaaatttttggtttccttaggaaacaaagaaaggagcaaaggtgtgttctacaaggccctccagagctgtccttgggcaaaggtgctgtacatggacgccgtggagtatttcccagaggagctgcaggagatcctggatgtgatgactgagaaggagctccgtgtgcgcctgcccctcgaggagctggagctgctgctggaggattagactagggctgtgcagcctgcagagcccagagccgcagcctcgcgaggccttcctccatggtctggtggggtttgggtgcatcgctttacatattatatatgtgatctctgtacagacggagatgccagtgataaaccttttgtggttgacatgtatgtacctccttattccctctgtccaccacacttggcccctcacactgcttgtgtccaggatcctggtctcggcctctgaccctggagtgccactgagatctccctcctcccctgggctgatgagcagagatacatagttctctctctgccacccagaacaggagatggttgtttactatttcctgtcttgggtcataggtgtggcaagtttattattatttctctagccttgctctggtgacagctgtctttgggggtccatagggacccttgggtctgcctttcactggagcccagctgatcatgtgctcagtacggtgtgcaaatccttgggcagcaccctctgtaggaaccttgctgtcacgtgacctcagagcagagtctgttcccaacagccgacctcacctggtgtagagcacctgtcttgagaatgcagtcactttttactgaggggcagctctgtagcacagcttctgcccatggctgtttagcttggctggagggatggcttgcctgtatttacggcaggaatgcccacagggattgcagagctgctttctggatattttgaaacagggtggccttgaactcttgcttctcctgcacttgcctcctgggcattaatattctatttctgcttatgttgggatttagacaccggccttacactgtcctgtagatggctcccccttctgtgtacacgtttcttacccttggtctcggacactccaagcctagtggcatcctcagggctgaattttgaagctgtttagcttctcatggagaccatctaagcagactacccactctgcacagccacctacatggagatatccctgggtggacaggaactcctccccacgcccaggtagccacaccctagacctggaacctgtgaatatcctgtagagtccgggatgcacatgaggtccacagaggcagaaggagcattgagaagttaatgccagtcacacctatacaattaagtctggactatacatgaagcctgggctacatttgaagatcttaatggcagaaatcaagtgagaaggctgtcctggggtgtcagtctggtcaggagactcttggaaggtgaaaaaggaaagtagaaaggggtggagagggagagaaaataaaagaggacccagagcttgacctgctcttctaactttgaagatggagggtgctaggatccaggagtcagggtggcctctacaaggtgggaaaggccctcagttgccagccagtactgaccacagcccatggctataaggagctgaccactcagacctcaaggaaactatttttctctctcgagcattcagaaaggggtacagtagatatcaagacagtagctttctgagtggtctttcgacaacctatacactaagataaatttgtacctgagtcatggtggcaaaaggagaggaagaggccttccctccataggccacctacctccttgtggctgtaaggaaccatctgttaaaggaaatactaagtgttgaggtttatgaacccagaactgaggcaggcatagttgggaaaagattcttcactgactcctcagggatctccccctcttgggaacacgcacggcccaatgtggaggctctagttagcccacagtaaagcagttccttcagccacattaacttagccttttccattcaaagaccattggccttgtggctccacctgaggcactgctttggaaatacgaagtgggctccttgtggttgccaatgggcttccctaatacagggtccccccatctgctgcagtgaaagtgcacgcttatgctgactaccttcctgtcaacttgacagaagccagtctcttgggagatggaactttacagagaaagtgcctccatcagatcggcctgtcttaagtctatgggattttcttaataaatgaatgatttgtggggttggggatttagctcagtggtagagcgcttgcctaggaagcgcaaggccctgggttcggtccccagctccgaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]