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2025-11-04 05:09:45, GGRNA.v2 : RefSeq release 232 (Sep, 2025)

LOCUS       XM_076462974            6712 bp    mRNA    linear   INV 29-AUG-2025
DEFINITION  PREDICTED: Tachypleus tridentatus uncharacterized LOC143230026
            (LOC143230026), mRNA.
ACCESSION   XM_076462974
VERSION     XM_076462974.1
DBLINK      BioProject: PRJNA1303201
KEYWORDS    RefSeq.
SOURCE      Tachypleus tridentatus (Chinese horseshoe crab)
  ORGANISM  Tachypleus tridentatus
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata;
            Merostomata; Xiphosura; Limulidae; Tachypleus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_134834) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_004210375.1-RS_2025_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.5
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/27/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6712
                     /organism="Tachypleus tridentatus"
                     /mol_type="mRNA"
                     /isolate="NWPU-2018"
                     /isolation_source="Ocean"
                     /db_xref="taxon:6853"
                     /chromosome="10"
                     /tissue_type="muscle"
                     /geo_loc_name="China"
                     /collection_date="2018-02"
     gene            1..6712
                     /gene="LOC143230026"
                     /note="uncharacterized LOC143230026; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 12
                     long SRA reads, and 94% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:143230026"
     CDS             138..6275
                     /gene="LOC143230026"
                     /codon_start=1
                     /product="uncharacterized protein LOC143230026"
                     /protein_id="XP_076319089.1"
                     /db_xref="GeneID:143230026"
                     /translation="
MSSSSFVAFALISGIVSNRLPFKGLLSLGNKKKSQGARSVKMSSSSQDLLSVGPRSCESEDVMILGQKLQLTVEDYQGSKLPETSTEGCARDLEKPDFELIIYSPSPLDELRGFQELQECPPPLVDWSICFEQMTNGCNVLDANVELKSGNGYNPGKLDENHTFYTEQKCLSSPVPKDNTCTGNSVHENAYFATNVAGSKVNKNLFPYEQTIVTMGDCKYDYDCNESDNDYSNHVKETIQEVPAILKYAYSEFCEGSVLHECDGVASLYRRNESKLTDQSSDTETGKSRHQTVLDGVKGLEKNMDNNSCNKKISYMSSLLRNCDDSSSVSNRHQYNDVNVSNKMTLNHELDFTTDSCKSNSLLDNSTQMSYWSETNSDTGNSNTISFSQKENCDYIDNNFQRKKLVNVNEKDGERNFQTTVNNSQGDKNDTSITLLEKMNNTMDVIVAKRTERSKLHHCELPETNSNVTLSVQKKCLFFRNNEIEERNSNIQLSKNASLISKRFLFTSSQDNQIPVKKIKTEENREKAIKIRDQYDWDIDSSSISGDVKTQNLLLNKQFQDGEVRKTTLEVQIIDGKDLCMYDCQNIFQVQTTDETKNAVVNLSQKNFQDEIIDTDNMQECNAEIPVINFETQTTNECKNAIVNLCQRNSQDQIIETDMQECNAEIPVINLETQTTNECKNAIVNLCQRNSQDQIIETDMQECNAKIPVINFETKTTDETKNAIVNLCQRNSQDQIIETDMQECNAEIPVINLETQTTNECKNAIVNLCQRNSQDQIIETDMQECNAKIPVINFETKTTDETKNAIVNLCQRNSKDQIIETDMQECNAEIPVINFETQTTDETKNAVVNLSQKNSQDEIIDTDMQECNAEIPVINFETQTTDETKNAIVNLCQKDYQDQIVETDMQECNAEIPVINFETQTTNECKNAIVNLCQRNSQDQIIETDMQECNAEIPVINFETQTTDETKNAIVNLCQRNSQDQIIETDMQECNAEIPVINFETQTTDETKNAVVNLSQKNSQDEIIDTDMQECNAEIPVINFETQTTDETKNAIVNLCQKDYQDQIVETDMQECNAEIPVINFETQTTNECKNAIVNLCQRNSQDQIIETDMHECNAEIPVINFETQTTDETKNAIVNLCQRNSQDQIIETDMQECNAEIPVINFETQTTDETKNAIVNLCQRNSQDQIIETDMQECNAEIPVINFETQTTDETKNAFVNLCQKNSQDQIIETDMQECNAEIPVINFETQTTEETKNAIVNLSKKNSQDEIIDTDMQECNAEIPVINFETQTTNECKNAIVNLCQRNSQDQIIETDMQECNAEIPVINFETQTTDETKNAIVNLCQKNSQDQIIETDMQKCNEEIPVINFETKYCDQTNNCKKLKYSIDVSHTCHPVQFMYHTKDYNGCDDNTHKTILQNQSTDQKNELECDVVISKKDLLTQLTDETNYSRVQDNDDVLTFHNESINLIKTTNNNNCTVEGSEKTIPQCQHNGQNINIFTQECVVGFFQSQLMQQIEEQEYKKGNSYAFTDETNVCDKQPCYLHATQNMFNIQSFDHGMLKGGVEVSHSQFCDQIKNSNTLTYCGRTCQTSSQTQLGNQQNSSDTMGFIVDGSQTTLQSQLTDESTNSITLECVTEPNASGIGVFHAFNKTQINDQIYRYNTQKSDVDIRQTVQKPQMNDQSYKSNALKSDDICLTVLQSHLIDQPHISDTYECDVEKYETALKNQLNCQPNKSGTLKCAINVFKTQMTEKQDNFDTSKYDIEVCQTKHQYQLTDQQNKPHTIESNVGDCQIFLKTQLTNEQTDADILGCDLDVCQTTWRTDLTDHVSNSDLWDLKQTQPEVHEKEYDTHVCKMNCLTLITNQFTNSDQKKFSVGIYQNVQSNNEKENLEIQTYQTSISTDHKSTKLGNTKDWDEPANSDTDYPKKALYDFHTVDQPSLFMPYKKSLTDKNIQTVLHGFHFMDSGQLSTAYDQLVPQSEEYAQKSDDDLSKTLYEKAFNWSSSSSVSQSLANKSESEEVHSRPLRIGLSRRQKVKSLHPYLFDKAS"
     polyA_site      6712
                     /gene="LOC143230026"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
gacgtcataaaacaaaatgtactttatttagaagttacaggtctgggacctcttcaaagtactctcctccccaacgcacacacttatcccaacggtgtttccacttgttgaaacaatcctggtacgcttcttttgtaatgtcctccagctccttcgtcgcatttgccttaatctcgggaatcgtctcaaatcgtcttcctttcaagggtcttttgagtttggggaacaagaaaaaatcgcaaggagcaaggtcagtgaagatgtcatcatcatcccaagatttattgtcagttggtcctagatcatgtgagagtgaagatgttatgatattaggacagaaactgcagttaactgttgaggactatcaaggaagtaaacttccagaaacctccactgagggatgtgccagagatttagagaaacctgactttgaacttattatatatagtccatccccacttgatgagcttagggggtttcaggaacttcaggagtgtcctcctcctcttgtagactggagcatttgttttgaacaaatgactaatggttgcaacgtacttgatgcaaatgtggaactcaaaagcggtaatggatataatccaggtaaacttgatgaaaaccatacattttatactgaacaaaaatgtctatcttcaccagttcctaaagataatacctgtacaggaaattctgttcatgaaaatgcatattttgcaacaaatgttgcaggaagtaaagtgaataagaacctgtttccttatgaacaaaccattgtaacaatgggtgattgtaaatatgattatgactgtaatgaatctgacaacgattatagcaaccatgtaaaagagaccatacaagaagtgccagctattctaaaatatgcatattctgagttttgtgaaggaagtgtgcttcatgaatgtgatggagtagcatctctttacagaaggaatgaaagtaaactgacagaccagtcatcagatacagaaactggaaaatctaggcatcagacagtgctggatggtgttaaaggtctggaaaaaaatatggataataacagttgcaacaagaaaattagttacatgagttcactgcttcgtaactgtgatgactcatcaagtgtttcaaatcgccatcaatacaatgatgtgaatgttagcaacaaaatgacactgaaccatgaattagattttacaactgacagttgtaagagtaattctcttttagataattccacacaaatgagttactggtcagaaactaacagtgatactggaaattcaaatacaattagtttttcacaaaaagaaaactgtgactatatagacaacaacttccagagaaaaaaattagtaaatgtaaatgagaaagatggtgaaagaaacttccaaaccacagtaaacaattctcaaggggataaaaatgatacatccattacattattagaaaagatgaataacactatggatgtcattgtagccaaaagaacagaaagaagtaaactgcatcattgtgagctgcctgaaaccaacagtaacgttactctttcagttcaaaagaagtgtttattttttagaaataatgagattgaagaaagaaatagtaatatccagctgtctaaaaatgctagtttgatttccaaaagatttctatttacttcttctcaagataatcaaattcctgtgaaaaagattaagacagaagaaaacagagaaaaagctattaaaataagagatcaatatgactgggatatagacagcagttctattagtggtgatgtaaaaacacaaaatctgctattaaacaaacaatttcaagatggtgaggttcgtaaaacaactcttgaagttcagattattgatggaaaggacttgtgtatgtatgattgtcaaaacatttttcaagttcaaactactgatgaaactaagaatgctgttgtaaatttatctcaaaaaaactttcaggatgaaattatagacactgataatatgcaagaatgtaatgcagaaatcccagtaataaattttgaaacccaaactaccaatgaatgtaagaatgctattgtaaatttatgtcaaagaaactctcaggatcagattatagaaactgatatgcaagaatgtaatgcagaaatcccagtaataaatcttgaaacccaaactaccaatgaatgtaagaatgctattgtaaatttatgtcaaagaaactctcaggatcagattatagaaactgatatgcaagaatgtaatgcaaaaatcccagtaataaattttgaaaccaaaactactgatgaaactaagaacgctattgtaaatttatgtcaaagaaactctcaggatcagattatagaaactgatatgcaagaatgtaatgcagaaatcccagtaataaatcttgaaacccaaactaccaatgaatgtaagaatgctattgtaaatttatgtcaaagaaactctcaggatcagattatagaaactgatatgcaagaatgtaatgcaaaaatcccagtaataaattttgaaaccaaaactactgatgaaactaagaatgctattgtaaatttatgtcaaagaaactctaaggatcagattatagaaactgatatgcaagaatgtaatgcagaaatcccagtaataaattttgaaacccaaactactgatgaaactaagaatgctgttgtaaatttatctcaaaaaaactctcaggatgaaattattgacactgatatgcaagaatgtaatgcagaaatcccagtaataaattttgaaacccaaactactgatgaaactaagaatgctattgtaaatttatgtcaaaaagattatcaggatcaaattgtagagactgatatgcaagaatgtaatgcagaaatcccagtaataaattttgaaacccaaactaccaatgaatgtaagaatgctattgtaaatttatgtcaaagaaactctcaggatcagattatagaaactgatatgcaagaatgtaatgcagaaatcccagtaataaattttgaaacccaaactactgatgaaactaagaatgctattgtaaatttatgtcaaagaaactctcaggatcagattatagaaactgatatgcaagaatgtaatgcagaaatcccagtaataaattttgaaacccaaactactgatgaaactaagaatgctgttgtaaatttatctcaaaagaactctcaggatgaaattattgacactgatatgcaagaatgtaatgcagaaatcccagtaataaattttgaaacccaaactactgatgaaactaagaatgctattgtaaatttatgtcaaaaagattatcaggatcaaattgtagagactgatatgcaagaatgtaatgcagaaatcccagtaataaattttgaaacccaaactaccaatgaatgtaagaatgctattgtaaatttatgtcaaagaaactctcaggatcagattatagaaactgatatgcatgaatgtaatgcagaaatcccagtaataaattttgaaacccaaactactgatgaaactaagaatgctattgtaaatttatgtcaaagaaactctcaggatcagattatagaaactgatatgcaagaatgtaatgcagaaatcccagtaataaattttgaaacccaaactactgatgaaactaagaatgctattgtaaatttatgtcaaagaaactctcaggatcagattatagaaactgatatgcaagaatgtaatgcagaaatcccagtaataaattttgaaacccaaactactgatgaaactaagaatgcttttgtaaatttatgtcaaaaaaactctcaggatcagattatagaaactgatatgcaagaatgtaatgcagaaatcccagtaataaattttgaaacccaaactactgaggaaactaagaatgcgattgtaaatttatctaaaaaaaactctcaggatgaaattatagacactgatatgcaagaatgtaatgcagaaatcccagtaataaattttgaaacccaaactaccaatgaatgtaagaatgctattgtaaatttatgtcaaagaaactctcaggatcagattatagaaactgatatgcaagaatgtaatgcagaaatcccagtaataaattttgaaacccaaactactgatgaaactaagaacgctattgtaaatttatgtcaaaaaaactctcaggatcagattatagaaactgatatgcaaaaatgtaatgaagaaatcccagtaataaattttgaaaccaaatattgtgatcagaccaacaactgtaagaaattgaaatatagtatagatgtttctcacacatgtcacccagtacagtttatgtaccacaccaaagattataatggttgtgatgacaatacacataagacaatacttcaaaatcagagtactgaccagaaaaatgaactcgaatgtgatgtagtcatttcaaaaaaagatcttttgactcagcttactgatgaaacaaattattctagagtacaagataatgatgatgtcttaacatttcacaatgaatcaattaacttgataaaaaccaccaacaataataattgcactgtagaaggctctgagaagacaataccccagtgtcaacataatggccagaatataaacatttttacacaagaatgtgttgtgggtttctttcaatctcagctcatgcaacaaattgaagaacaagaatataagaaagggaattcatacgcattcactgatgagacaaatgtgtgtgataaacagccatgttacttacacgccacacaaaacatgtttaatatccaatcctttgatcatggtatgttgaaaggtggtgtagaagtttcacactcccaattttgtgatcaaataaaaaattccaatacactgacatattgtgggagaacttgtcaaacatcttctcaaactcaactgggtaaccagcaaaacagttctgatacaatgggatttattgtagatggttctcagacaactctccagagccaactgactgatgagtcaactaattccattaccttagaatgtgttactgaacctaatgccagtggcattggtgtttttcatgcatttaacaaaacccaaataaatgaccaaatatataggtataatactcagaaaagtgacgtagacattcgtcaaactgttcaaaaaccacagatgaatgatcagtcttataagtctaatgctctaaaaagtgacgatatttgtctgacagttctccaaagccacttgattgaccagccacacatttctgatacatatgaatgtgatgtagaaaaatatgaaacagctctcaaaaaccaactgaactgccagccaaataagtctggtacactgaagtgtgctattaatgttttcaaaacccagatgactgaaaagcaagataattttgacacctcaaaatatgatattgaagtctgccaaacaaaacaccaatatcaattgactgaccaacaaaataaacctcatacaatagaaagtaatgttggtgattgtcagatatttcttaaaacccagttaactaatgagcaaactgatgctgatatattaggatgtgatctagatgtttgtcagacaacttggagaactgatttgactgatcatgtctccaattctgatttatgggatttgaagcagacacaacctgaagttcatgaaaaggaatatgacacacatgtttgtaaaatgaattgccttacactaattactaatcagtttacaaacagtgatcaaaagaaatttagtgtaggtatatatcaaaatgtgcagtctaataatgaaaaagagaaccttgaaatacagacttaccagacaagtatttccactgatcacaaaagtacaaaacttggtaacactaaagactgggacgagcctgcaaactctgacacagattatcctaagaaggctttgtatgactttcatacagttgaccagccctcattatttatgccatataaaaaatccctgacagacaagaatattcaaactgttcttcatggttttcattttatggacagtggtcagctgtccactgcttatgaccagttagtcccacaatcagaagaatatgctcaaaagtctgatgatgacctatctaaaactttatatgaaaaggcatttaattggagttccagctcatctgtttctcagtcactcgccaacaagtcagagtcagaagaagttcatagcagacctttaaggattggtttgtcacgaaggcaaaaagtcaaatctcttcatccatatctttttgacaaagcttcttaatacaagtattaagagaagccaaagttctagccatgtataccttctttataaactgtagtgaagtcaaaacttaacattcatatgttatctgagatttgttatttttgtgcctaatatatgcaaactatatgtagttcctacatatttagtgttttgatatttatgtttacttaaataagatatataataataaaaaatgtatgcatacttgtagttaaatcagcataattttgtatttttctcatttcatttaacatgaatgaatttcactttgttttataaaatattatcctagcttttgatgaattatctttatctataaatttagatgataactttcttaatttcactattttaactcatgaacagtgaatcgtactcgattttgtaaacatgtttgaaactacattaaaagtcagtgcttcttacactctgaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]