GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2025-10-19 00:50:11, GGRNA.v2 : RefSeq release 232 (Sep, 2025)

LOCUS       XM_076082503            4642 bp    mRNA    linear   VRT 09-AUG-2025
DEFINITION  PREDICTED: Anarhichas minor centriolin (cntrl), mRNA.
ACCESSION   XM_076082503
VERSION     XM_076082503.1
DBLINK      BioProject: PRJNA1302493
KEYWORDS    RefSeq.
SOURCE      Anarhichas minor (spotted wolffish)
  ORGANISM  Anarhichas minor
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Zoarcales;
            Anarhichadidae; Anarhichas.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_027466541) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_050575085.1-RS_2025_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.4
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/08/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4642
                     /organism="Anarhichas minor"
                     /mol_type="mRNA"
                     /isolate="MPS153535"
                     /db_xref="taxon:65739"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="spleen"
                     /dev_stage="adult"
                     /geo_loc_name="Canada: St-Lawrence Gulf, near Anticosti
                     Island, Banc Beauge"
                     /collection_date="2022-07"
                     /collected_by="Karine Beland and Nathalie Rose Le
                     Francois"
     gene            1..4642
                     /gene="cntrl"
                     /note="centriolin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:142939251"
     CDS             118..4395
                     /gene="cntrl"
                     /codon_start=1
                     /product="uncharacterized protein cntrl"
                     /protein_id="XP_075938618.1"
                     /db_xref="GeneID:142939251"
                     /translation="
MSARMSRKQSEMEGRLDDMLSRIAMETQEIKELEQQLTDGQILVNESLQKDLEKIICGLQEYLKGLREQARRSQQQVHGLQTENQSLQLHLEDTQGHCRQLEDRTRTLRRDVSVQQEELSVLRMEAQALRDRQVELQQLREELTRQTARRQDENSSLQQEVQTLQTHLDQTKAHLHHTRTQYKDTRTHVDQTRIQLDQITVAMMDPQEVQSGPEQLHENKYSPVSPEDMLSRSVEQLYRAIQQTRTRREQFQQDQNHSQEQMDRLQAQLVQDQDHIAQLKAQLVQDQDHISQLEAQVIRGMDQDQDPDWRLKEDLETLRVRLQRTRHVQHKLEAELQQSGAKLQDVQQERDTLLQQLRSQSDGHQRSIGRLNRKLRQPSRSMCDSDQLTAEQLRALNTMIDGSFHRPEAGERPEHTVDRTQRHRRRQKLDRTRTRTTDPGHTAPSLASLGTQDSGLGLQYVSSPERGRPTGGGYRVYVAPTHTNCEWRDSGGGSDADRNCRGRTPPPPPPPPPLAAAVSAGQTPLVGPAWLLCNIPEHRDTGDRCVCECLHKEVERLEEEKKKLRLETKQLRHTLRQHRSVMQVCDEVECVEKTLLKRRAELRQADRLLLEAQSFVHTTRDKVEQQEQRLLQRSEEHQTAVNREEEQRLQSRVKELLEQQEELLSQRREEETRLITHRAELKLVLQELLVEQQALEEVKIKRTHSLQRLHKKQEQLDRMRDEVDRMRDQGDRLRDEVNRMRDEVDRMRDQGDRLRDEVNRMRDEVDRMRDEVDRMRDQGDRMRDEVDRMRDQGDRLRDEVNRMRDEVDRMRDQGDRLRDEVNRMRDEVDRMRDEVDRMRDQGDRLRDEVDRMRDEVDRMRDQGDRMRDEVDRMRDQGDRMRDEVDRMRDQGDRLRDEVNRMRDEVDRMRDEVDRMRDQGDRLRDEVDRMRDEVDRMRDEVDRMRDQGDRLRDEVDRMRDEVDRMRDEVDRMRDQGDRMRDEVDRMRDQGDRMRDEVDRMRDQGDRLRDEVNRMRDEVDRMRDQGDRLRDEVNRMRDEVDRMRDQGDRLRDEVNRMRDEVDRMRDEVDRMRDQGDRMRDEVDRMRDQGDRLRDEVNRMRDEVDRMRDQGDRLRDEVNRMRDEVDRMRDEVDRMRDQGDRLRDEVDRMRDEVDRMRDQGDRMRDEVDRMRDQGDRMRDEVDRMRDQGDRLRDEVNRMRDEVDRMRDEVDRMRDQGDRLRDEVDRMRDEVDRMRDEVDRMRDQGDRLRDEVDRMRDEVDRMRDEVDRMRDQGDRMRDEVDRMRDEVDRMRDQGDRMRDEVDRMRDQGDRLRDEVNRMRDEVDRLRDEVDRMRDEVDRMRDEVDRMGDEVDRMRDQGDKKREELNELQQEVESHRNKTERRRTELQELQEELSRSREERSSLQEERSSLQEQCKHCSTHTHTHSMRHTH"
     polyA_site      4642
                     /gene="cntrl"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
ggaagataagtttgtaacggacagaggagcagagagatgaaggagtagagaagaggaggaggaggaggacatggtattacccagcagccccctgtgtctctgactggctgcagccagatgtcagccaggatgagcaggaagcagagcgagatggagggtcgccttgacgacatgctgtcacgcatcgccatggagacgcaggagatcaaagagctggagcaacagctgaccgacggtcagatattggtcaatgaatctcttcagaaggatttggagaaaatcatctgtggccttcaagaatatctgaaaggactcagagagcaggctcgtcgttctcagcagcaggttcacggtctgcagacagagaaccagagtctgcagctccacctggaggacactcagggacactgcagacagctggaggacaggaccaggacactcagacgggacgtgtccgtccagcaggaggagctgtctgtgctacggatggaggcccaggctctgagagacagacaggtggagctccagcagctgagggaggagctaacccgacagactgcaaggagacaggatgagaactcatctcttcaacaagaagtccagacacttcagacccatctggaccagaccaaagcccacttacaccacaccagaacccagtataaagacaccaggacccacgtagaccagaccagaattcagctggaccagattacagttgccatgatggatcctcaggaggttcagagtggaccagaacagctgcatgagaacaagtacagtcctgtcagtcctgaggacatgttgtccaggagtgtggagcagctctacagggccatccagcagaccagaaccaggagagagcagttccaacaagaccagaaccacagccaggaacagatggaccgactgcaggcccagctagtccaggatcaggaccacatagcccagctcaaggcccagctagtccaggatcaggaccacatatcccagctggaggcccaggtgatccgcggcatggaccaggaccaggacccggactggaggctgaaggaggatctggagacactgagagtgagactgcagagaaccagacacgttcaacacaaactggaggcggagctacagcagagcggtgcgaagcttcaggatgtccagcaggagagagacacgctgctacagcagctgcgttcacagagcgacggtcaccagaggagcatcggacgcctgaacaggaaactacggcagcccagcaggtccatgtgtgactctgatcagctgactgcagaacagctgagagctctgaacaccatgatcgacggcagctttcaccgacctgaagcaggagaacgtccagaacacacggtggatagaacccagagacacagacggagacagaagctggaccgcaccaggaccagaaccacagatcccggacacactgctcccagtctggcctctctggggactcaggactctggtttgggtctgcagtacgtcagttctcctgagagggggcgacccacaggaggagggtaccgggtctacgtcgctccaacacacaccaactgtgagtggagggacagcggaggaggcagcgacgccgacaggaactgcagaggacggactcctcctcctcctcctcctcctcctcctcttgctgcagctgtctctgctggtcagactcctctggtcggaccggcctggctgctctgtaacatcccagaacacagagatacgggtgacaggtgtgtgtgtgagtgtttgcacaaagaagtagagcgactggaagaggagaagaagaaactacggctggaaaccaaacagctacgacacacactgagacaacacaggagtgtgatgcaggtgtgtgatgaggtggagtgtgtggagaaaactctgctgaagagacgagctgaactccgacaggctgaccgactgctgctggaggctcagagcttcgtacacaccaccagggacaaggtggagcagcaggagcagaggctgcttcagaggagcgaggagcatcagactgctgtgaacagagaggaggagcaacggctgcagagcagagtcaaggagctgttggagcagcaggaggagctgctgagtcagaggagagaagaagagaccagactcatcacacacagagcagagctgaagctggtcctccaggagctactggtagagcagcaggcgctggaggaggtgaaaatcaaacgcacccacagtctgcagcggctccacaagaagcaggaacagctggacaggatgagggatgaagtggacagaatgagagaccaaggggacagactgagggatgaagtgaacagaatgagggatgaagtggacagaatgagagaccaaggggacagactgagggatgaagtgaacagaatgagggatgaagtggacaggatgagggatgaagtggacagaatgagggaccaaggggacaggatgagggatgaagtggacaggatgagggaccaaggggacagactgagggatgaagtgaacagaatgagggatgaagtggacagaatgagagaccaaggggacagactgagggatgaagtgaacagaatgagggatgaagtggacaggatgagggatgaagtggacagaatgagggaccaaggggacagactgagggatgaagtggacagaatgagggatgaagtggacagaatgagagaccaaggggacaggatgagggatgaagtggacaggatgagagaccaaggggacaggatgagggatgaagtggacaggatgagggaccaaggggacagactgagggatgaagtgaacagaatgagggatgaagtggacaggatgagggatgaagtggacagaatgagggaccaaggggacagactgagggatgaagtggacagaatgagggatgaagtggacaggatgagggatgaagtggacagaatgagggaccaaggggacagactgagggatgaagtggacagaatgagggatgaagtggacaggatgagggatgaagtggacagaatgagagaccaaggggacaggatgagggatgaagtggacagaatgagagaccaaggggacaggatgagggatgaagtggacaggatgagggaccaaggggacagactgagggatgaagtgaacagaatgagggatgaagtggacagaatgagagaccaaggggacagactgagggatgaagtgaacagaatgagggatgaagtggacagaatgagagaccaaggggacagactgagggatgaagtgaacagaatgagggatgaagtggacaggatgagggatgaagtggacagaatgagggaccaaggggacaggatgagggatgaagtggacaggatgagggaccaaggggacagactgagggatgaagtgaacagaatgagggatgaagtggacagaatgagagaccaaggggacagactgagggatgaagtgaacagaatgagggatgaagtggacaggatgagggatgaagtggacagaatgagggaccaaggggacagactgagggatgaagtggacagaatgagggatgaagtggacagaatgagagaccaaggggacaggatgagggatgaagtggacaggatgagagaccaaggggacaggatgagggatgaagtggacaggatgagggaccaaggggacagactgagggatgaagtgaacagaatgagggatgaagtggacaggatgagggatgaagtggacagaatgagggaccaaggggacagactgagggatgaagtggacagaatgagggatgaagtggacaggatgagggatgaagtggacagaatgagggaccaaggggacagactgagggatgaagtggacagaatgagggatgaagtggacaggatgagggatgaagtggacagaatgagagaccaaggggacaggatgagggatgaagtggacaggatgagggatgaagtggacagaatgagagaccaaggggacaggatgagggatgaagtggacaggatgagggaccaaggggacagactgagggatgaagtgaacagaatgagggatgaagtggacagactgagggatgaagtggacagaatgagggatgaagtggacaggatgagggatgaagtggacagaatgggggatgaagtggacagaatgagggaccaaggggacaagaaaagggaagaactgaatgagctgcaacaggaagttgagtcccacagaaataagacggaaagacggagaacagaactgcaggagctgcaggaggagctgagcaggagtagggaggagaggagcagcctgcaggaggagaggagcagcctgcaggaacagtgtaaacactgctccacacacacacacacacactccatgagacacacacattgaatattcctgatgtctttgaatgcatcatgtgggagagaacactgcagctcgtggtgccttcatgaaaacatgtaaaacgtactgtttctgtgtaaatgatatttatctttgaattaagcacttcctgttggtttcactggtggatgaaacaaaatgaaagattttcaaaataaggctgaggatttttttaaatgttatagttaaatataaaaaacttaataaatgacttcagtatttctttgtttaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]