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2025-10-15 04:17:58, GGRNA.v2 : RefSeq release 232 (Sep, 2025)

LOCUS       XM_075562877            6438 bp    mRNA    linear   MAM 22-JUL-2025
DEFINITION  PREDICTED: Tenrec ecaudatus ATPase copper transporting beta
            (ATP7B), mRNA.
ACCESSION   XM_075562877
VERSION     XM_075562877.1
DBLINK      BioProject: PRJNA1291776
KEYWORDS    RefSeq.
SOURCE      Tenrec ecaudatus (tailess tenrec)
  ORGANISM  Tenrec ecaudatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Tenrec.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_134540) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_050624435.1-RS_2025_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.4
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/16/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6438
                     /organism="Tenrec ecaudatus"
                     /mol_type="mRNA"
                     /isolate="mTenEca1"
                     /db_xref="taxon:94439"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="primary dermal fibroblasts"
                     /dev_stage="adult"
                     /geo_loc_name="USA: Las Vegas, Nevada"
                     /lat_lon="36.107 N 115.143 W"
                     /collection_date="2023-03-15"
                     /collected_by="Allyson Hindle"
     gene            1..6438
                     /gene="ATP7B"
                     /note="ATPase copper transporting beta; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:142461195"
     CDS             46..4299
                     /gene="ATP7B"
                     /codon_start=1
                     /product="copper-transporting ATPase 2"
                     /protein_id="XP_075418992.1"
                     /db_xref="GeneID:142461195"
                     /translation="
MKQDFAYDNAGYESSENSVATSTVHIVGMTCQSCVKTIESMVSSIDGLVSVKVSLEQGSAAVRYMPSVVSLQQICYLIEDMGFEASVPEGKAASWPPRPSPVGEALVKLRVEGMTCQSCVNSIEGNLGKLQGVVRAKVSLGNQEAVIAYQPYLIQPEDLRDHVNDMGFEATIKHKAAPLSLGPIDIGRLQSTNPKRLSAPVPQSPRGPEPPGDQGSPSVTLQLRVEGMRCKSCVFNIENNIGRLPGVREIQVSLEHGTARVHLEPSLISPETLQEAIEALPPGNFQVSLPGGSEGSGTECLPGVGPAERQAPGCSQRSEEPGVHRRVTLAIAGMMDASCVQWIKGVLSQREGVRRVSVSLAEGTGSILFHPALLNPEELRAAVQDMGFEVTILSDNSSSNHTGSPGVGNSAVQTPGGTPMSTQAPPDRRSPRSPRPGHSSGSPPSPEVAPQKCFLQITGMTCASCVSNIERSLLKEAGILSVLVALMAGKAEVKYNPEVIQPLEIAQLVESMGFGATVMEDYTGPEGSFELVIRGMTCASCVHNIESKLTRTNGITYASVALATSKAHVKFDPEIIGPRDIVKIIEETGFHASLAPRDPNAHHLDHRLEIKQWKKSFLCSLVFGIPVMGLMIYMLIPSQEAHEAMVLDHNIIPGLSILNLIFFILCTFVQFLGGWYFYVQAYKSLKHGTANMDVLIVLATSIAYAYSLVILVVAIAEKAERSPVTFFDTPPMLFVFIALGRWLEHVAKSKTSEALAKLMSLQATEATVVTLGEDNVIIREEQVPMELVQRGDIIKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSTVIAGSLNAHGSVLVTATHVGRDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIISTVTLVVWIIIGFLDFGVVQKHFPGHSTHISQTEVILRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLELAHKIKTVMFDKTGTITHGVPKVTRFLLLVDVATLPLRKVLAVVGTAEASSEHPLGVAVTKYCKEELGTEALGYCTDFQTVPGCGIGCKVSSVDGTLAPKEHLNGVGNGLAEKDAAPETFSVLIGNREWMRRNGLTISSDVSDAMTDHEIKGQTAVLVAIDGVLCGMIAIADSVKQEAVLAVHTLKSMGVDVVLITGDNRKTARAIATQVGIHKVFAEVLPSHKVAKVQELQLQGKKVAMVGDGVNDSPALARADVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVWRIRINLVLALIYNLIGIPIAAGVFMPIGIVLQPWMGSAAMAASSVSVVLSSLELKCYRKPDLEWYEVQAHGRLKPLTPSQVSVHIGLDDRLRDAPRPSLWDQVSYVSQVSHTSDRLSRHSATADDSGDKWSLLLTDRDEEEYI"
ORIGIN      
gtctcgtctcaaccctctgtgcccacccgtgcctgggaagcggccatgaagcaggatttcgcctatgacaatgcgggctacgaaagcagtgagaacagcgtggccaccagcacggtccacattgtgggcatgacatgccagtcttgtgtcaagaccatcgagagcatggtgtccagcatagacggcctcgtgagcgttaaggtctccctggagcagggcagtgccgccgtgcggtacatgccatcggtcgtgagcctgcagcagatctgctacctcatcgaggacatgggcttcgaagccagtgtccccgaagggaaggctgcctcttggccccccaggccctcccccgtgggagaggccctggtcaagcttcgagtggaaggcatgacctgccagtcctgcgtcaactccatcgagggcaatctagggaagctgcaaggcgtggtgcgtgccaaagtctccctgggaaaccaggaggctgtcatcgcctatcagccttaccttattcagccagaggacctcagggaccatgtcaacgacatgggatttgaagccaccatcaagcacaaggcagcccccctgagcctggggccaatcgatattggacgcttgcaaagcacgaacccaaagaggctttcagctcctgttccccagagtccccgtggtcctgaacccccgggggaccaaggaagccccagtgtcaccctgcagctgagggtagaggggatgcggtgtaagtcttgtgtcttcaacattgaaaacaacattggccgacttcctggtgtccgcgagatccaagtgtccctagagcatggaacggcccgagttcaccttgagccttctctcatctctcccgagactctccaggaggccattgaagctcttcccccggggaacttccaagtttctcttcctgggggctcagaagggagtgggaccgagtgcctgccaggggtcgggcctgccgagcgccaggcccctggctgctcccagcggagcgaggagcctggagtgcacagaagggtgacgctcgccattgcaggcatgatggacgcgtcctgcgtccagtggatcaaaggtgtcctatcccagagggaaggcgtgcgtcgggtctctgtctccctggcagaagggactggcagtatcctctttcaccctgctctgctgaacccagaagagctcagagctgccgtccaagacatgggattcgaggtgaccatcctctctgacaactcttccagcaaccatactggaagcccgggtgttgggaattctgcggtacaaactccaggtggcacaccgatgtctacacaggcgccccctgacaggaggtcccctcggagcccccgccccggccactcgtccggctccccaccatctcccgaggtggctccacagaagtgctttttacagatcacaggcatgacttgtgcctcctgtgtgtccaacatagagcggagcctgctgaaagaagccggtatcctctccgtgctggtggccttgatggccggaaaggcagaggtcaagtataacccggaagtcatccagccactggagatcgcccagctggttgagagcatgggctttggggccacagtgatggaagactacacaggccccgagggcagcttcgagctggttatccgagggatgacctgcgcctcctgtgttcacaacatcgagtccaagctcacaaggacaaacggcatcacctacgcctccgtggccctcgccaccagcaaagcccacgtgaagtttgaccctgagatcatcggtccacgggatattgtgaaaatcatcgaggaaactggctttcatgcttccttggccccgagagaccccaacgctcatcacctggaccacagactggaaataaagcagtggaagaagtctttcctgtgtagcctggtgttcggcatccctgtgatgggtctgatgatctacatgctcatccccagccaagaggcccatgaggctatggtcctggaccacaacatcatccccggactgtccattctaaacctcatcttcttcatcttgtgtacctttgttcagttcctcggggggtggtatttctacgtccaggcctacaagtctctgaagcacgggacggccaacatggacgtgctcatcgtgctggccacaagcatcgcctacgcctactccctggtgatcctggtggtggccatcgcggagaaggccgagaggagcccggtgaccttcttcgacacgccgccgatgctctttgtgttcatcgccctgggacggtggctggagcacgtggccaagagcaaaacctcagaagccctagccaagctcatgtcactccaagccacagaggccaccgtcgtgaccctgggggaggacaacgtcattatcagagaggagcaggtgcccatggagctggtgcagcggggtgacatcatcaaggtggtccccgggggcaagttcccagtggacgggaaggtcctggaaggtaacaccatggccgacgagtccctcatcacaggagaagccatgccggtcaccaagaagccaggcagcacggtgatcgcgggctccctcaacgctcacggctctgtgctcgtgactgccacccacgtgggccgagacaccacgctggcccagattgtgaagctggtggaagaggcccagatgtcaaaggcacccattcagcagctggctgaccggttcagtgggtattttgtcccattcatcatcatcatttcgacggtgacgttggtggtatggattataatcggttttctcgattttggtgttgttcagaaacacttccctggccacagcacgcacatctcgcagacggaggtgatcctccggtttgccttccagacgtccatcaccgtgctgtgcatcgcctgcccctgctcgctgggcctggccacgcccacggccgtcatggtgggcaccggggtggccgcgcagaatggcatcctcatcaaggggggcaagcccctggagctggcgcacaagataaagaccgtgatgtttgacaagacaggcaccatcacccatggggtccccaaagtcacgcgcttcctcctgctggtggatgtggccacgctccctctcagaaaggtccttgctgtggtggggaccgccgaggccagcagcgagcaccccttgggcgtggcggtcaccaagtactgtaaagaggaacttggaacagaagccctgggctactgcacagacttccagacagtcccgggctgtggcatcggctgtaaggtcagcagcgtggatggcaccctggccccgaaggagcacctgaacggagtgggcaacgggcttgccgagaaagacgcggcccctgagaccttctccgtgctgattgggaaccgcgagtggatgaggcgcaatggcttaaccatctccagtgacgtcagtgacgcgatgacagaccacgaaataaaagggcagacagcggtcctggtggccatcgatggtgtcctctgcggaatgatcgccatcgcggactctgtcaagcaggaggcggtgctggctgtgcacacgctgaagagcatgggggtggacgtggttctgatcaccggggacaaccgcaagaccgcccgggccatcgccactcaggtcggcatccacaaggtctttgccgaggtgctgccctcccacaaggtggccaaggtccaggagctgcaactccaagggaagaaggtcgccatggtcggagacggggtcaacgactccccagccttggcccgggccgacgtgggcattgctattggaacgggcaccgacgtggccatcgaggcggccgatgtggtcctcatcaggaatgacctcctcgacgtggtggccagcatccacctttccaagaggaccgtgtggagaatacggatcaacctggtcctggcgttgatctacaacctgattgggatacccattgcggcaggtgtcttcatgcccatcggcatcgtgctgcagccctggatggggtcagcggccatggccgcctcctcggtctccgtggtgctgtcatccctggagctcaagtgctacaggaagccagacttggagtggtacgaggtgcaggcccatggccgcctgaagcccctgaccccatcccaggtcagcgtgcacatcggtttggacgaccgcctgcgggacgccccccggccctcgctgtgggaccaggtcagctacgtcagccaggtgtctcatacctcagacaggctgtcccgacacagtgccacagccgacgacagcggggacaagtggtccctgcttctaacggacagggacgaggaggagtacatctgaaggctccaggcaggtgccgatccagcaggcttgtctccagggagcagctgtgccccgaacacgctgttggcggcccgagggcaccgtgtggcacaacagccagggccagggtggtgtaggcatcaggccatcccggccatccctgtagccatagcccattggccctgcgagcagcatccgtctgaacaggactgacctccctgggccctgctggccccagggcataccgacctggtctcctcctccccttcctcctcctcctcctcagtaactttggcttggacaagaggagagcaaggtcggcctcctcctgggcctcatgtcttccactctggacaactacttgcaaaagacgggggaccctcatcagaaccaaaaactgatccaggcctttcctcaggactcaaaagcatcaggttgggctcttctggtgatgtccccacgcgtgtgagaccacagtttatacctcagctgcacctgttgttgtctgttagcgccacctcctcctcctcctccctctgtgctcggtatccagccgtcctggaggtccctgctgccgtcccccaaacacgctctgtctgtgcacttcctgcccaaggctgtcctctcccacacacgcctgcccggttcactgaggagaggccgcacttcctcaagttaagactcgtctcaaggagtctgggcttcccaacccgggctctggacagtccagacttcctgcgggtgggctgagtccctgtgggaggccttggtggtgctcgacgtgaatgccctttaggggtgcatgcggggtggctggccaggcccccagggagcagggcctaccttgtattctatgaagatgtcccttctcagaagctactagataatgcttgggaggggtgccctggagtcagcagggacatcccagtgagtgagtcatcctgctccactattagccttctccacgtgtgccttaggacagcggtgtccccaaaagagagcctctctttcttcccagggctccaaactggtcccaccatggccaaggcagcaaaatggaaactgacctgaatttgtaaaacgtgggtgtcccgagaggggaagatgatgagccctggaatgagaaactcagaagagccccagagagccctttccagagcctgaggctggagactggcttgtcgctaatgctgtaggccgccatctggaagctggccaccattggtttcacctctgtcagggctgcccttgttttctaagagggaggctaaggtcctaggagtatgccgcctgtaattttcccttttggggtatcattccagtacacccatattccaaaaatgtgagcttgtagggagctttgttgaccagcatggcgcccgagagaacctgttcagagcctcttcaggctttctcgctcttggcgacttcctggtggtggtgacccgccatccgagttgggagagtggaccatgcttcgaccctgaagtcggctggtgattggccagagccacacgggagtggacgggtggaatctgacattacatgcttcagaggcctgtggtcacccacaaaagataacgagactgtgaccgagtgtcagttatatcccaggtgaatgtcaccacttttgatatgttacctctgctcctcaaagcaaactagcaaggtagatctcagtggcccccctttcaggtgagggaacagattccctccgccagtatgtgttgccacgtctgttggctcggaagtcttcaactctgcagatcctcgaagctccgcatgctggataagaaggacgactcaagcaatcagttcttggcccgggaagaccgcagctgcggggctttgtctgtgttgcccgctagtgaggtctcgcgtacctggctgtgtggtttccttttgccatcagttgatgtctgctgagcttcgtcctctaaaagtcaagtgccagcgtggttcgattttgctttttgtcgttttcaagctttctctccctcccacctccttccccctgcactgggccaattatctcctccccattcttccacctgtccagggacacctcgtgtcattacattgtctctacaatgtagtgttttgtcttatgaaaaagcttttagtaccataaatgtatatatttatgggcatgggaat
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]