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Previous release (v1)
2025-10-28 05:54:55, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_075265899 5377 bp mRNA linear VRT 14-JUL-2025
DEFINITION PREDICTED: Leptodactylus fuscus ATPase copper transporting beta
(ATP7B), mRNA.
ACCESSION XM_075265899
VERSION XM_075265899.1
DBLINK BioProject: PRJNA1288464
KEYWORDS RefSeq.
SOURCE Leptodactylus fuscus (rufous frog)
ORGANISM Leptodactylus fuscus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea;
Leptodactylidae; Leptodactylinae; Leptodactylus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_134266) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_031893055.1-RS_2025_07
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.4
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 07/10/2025
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..5377
/organism="Leptodactylus fuscus"
/mol_type="mRNA"
/isolate="aLepFus1"
/db_xref="taxon:238119"
/chromosome="2"
/sex="female"
/tissue_type="liver"
/dev_stage="adult"
/geo_loc_name="Colombia: Bogota"
/lat_lon="4.60064 N 74.06604 W"
/collection_date="2020-01-25"
/collected_by="Melissa Hernandez"
gene 1..5377
/gene="ATP7B"
/note="ATPase copper transporting beta; Derived by
automated computational analysis using gene prediction
method: Gnomon. Supporting evidence includes similarity
to: 16 Proteins, and 97% coverage of the annotated genomic
feature by RNAseq alignments"
/db_xref="GeneID:142195841"
CDS 1..4482
/gene="ATP7B"
/codon_start=1
/product="copper-transporting ATPase 2"
/protein_id="XP_075122000.1"
/db_xref="GeneID:142195841"
/translation="
MILAKDNIVISEEEVKPKDNNIALTLQRKSLDSTRHVNPNSEDCLDVHRRVESGKMASDHGNLKKQTSEDYGIIKTNHTLSPRFAFDNRGYEGSLNDLTYSNPDVTSMVVEIIGMTCQSCVQSIEGRISKVPGVVSIKVDLDQGNATVCYIPSEITPQKICEEIEDMGFDAHLQEYKEPSTSLKGAHYKEDVVKIRVEGMTCQSCVNTIEGKIGKIQGVEKIKVSLANQEAVIVYCPHYIQPEDLRKHIDDMGFVASVKSKPDPSKLGTINIERLQSISTEPKITNTGNAKTRTIHVEGMHCKSCVHNIEGSISELPGVHNIKVSLENKNALITFIEGMTSLLTLKEAIEALPPGHFKVTIPVDDELSPALRSKSTIQSSAKEGHRTTAKTTLISIGGMTCGSCVSTIESMISQRKGVQSISVSLLERMGTILYTQTETNSEELRAAIEDMGFGATIISDSPLTMNINHSSSTRSDLNQKLPETTKKVNLHQDYIVDVLPKKPQPGIPLMENATPQKCILQVTGMTCASCVSNIERNLKKKTGIVSVLVALMAGKAEVKYIADQIEPTEIAQFIESLGFGAVVLEDCTATHGSIELVITGMTCASCVHNIESRLTGTPGILQASVALATCKAQVKFDPEIVGPRDIVQVIEGIGFQASLAKRDPSAHNLDHKEEIRQWRKSFLFSLIFGIPVICIMVYMLIAHHGPSVLDKNILPGLSIMNFIFFILCTLVQSFGGWYFYVQAYKSLKHKAANMDVLIVLATTIAYIYSVVILIVAIVEKSEQSPETFFDTPPMLFMFIALGRWLEHIAKSKTSEALAKLISLQATEATVVTLGPNYSVVREEQVAVELVQRGDIVKVVPGGKFPVDGKVIEGTSMADESLITGEPMPVRKKPGSIVIAGSINAHGSVLVEATHVGSDTTLAQIVKLVEEAQMSKAPIQQLADKISGYFVPFIISISIVTLIGWTTVGFVNFDVILKYFPDYSKTISKTEIIIRVGFQTAITVLSIACPCALGLATPTAVMVGTGVAAQNGILIKGGEPLEMAHKINTVMFDKTGTITHGVPKVMRVLLLGDPGSMPLKRMLAVIGTAEASSEHPLGMAVAKYCKEELGTESLGYCTDFQAVPGCGISCKVNNVESVLVQSEEGLNEQNVYKSGLVHPQEDNSLIIAPELQGASAPQPHSVLIGNREWMRRNGLHISSDVDEAMTSHETKGQTAVLVAIDGALCGMVAIADTVKQEAALAVHTLKAMGVDVVLITGDNRKTAKAIATQVGIKKVFAEVLPSHKVAKVQALQSEGKRVAMVGDGVNDSPALARADIGIAIGTGTDVAIEAADIVLIRNDLLDVVASIHLSKRTVRRIRINFMFALIYNLLGIPIAAGVFLPVGLVLQPWMGSAAMAASSVSVVLSSLQLKCYTKPDSDKYEARAQGLMKPLNPSQISVHVGMDDRRRDIPMTSTWDQISFISQSSRSSRQNSSVGDRQDKRSLLVSEADEDQYM"
ORIGIN
atgattttggctaaggataatattgtcatcagcgaagaagaggttaaacctaaggataacaatatagctctgaccctccagagaaagtctcttgatagtactcgacatgtaaatcctaactcagaggattgtctggacgttcatagaagggtagaatcaggaaaaatggccagcgatcatggaaacctcaaaaaacagacctctgaagattatggcattatcaagacaaaccatacactatctccaagatttgcttttgacaacagaggctatgagggtagcctcaatgacctcacctactcaaaccctgatgttacttcaatggtggtggaaattataggaatgacctgccagtcatgtgtacaatcaattgaaggaaggatctcaaaggtaccaggtgtggtcagcataaaagttgacctcgatcagggcaatgccaccgtatgttacataccttctgaaataacacctcagaagatctgtgaggaaattgaagatatgggttttgatgcccaccttcaagaatacaaagaaccttcaacatccttgaaaggtgctcactataaagaggatgtggttaaaattagagtagagggtatgacgtgtcagtcatgtgtcaatacaattgagggaaaaattgggaaaattcaaggagttgaaaaaataaaggtttctctggcaaaccaagaagcagtgattgtttattgcccacactacatccagccagaagatctgcggaaacatatagacgatatggggtttgtggcttctgtcaaaagcaaaccggatccatcaaagcttggaacaattaacatagaacgcttacaaagtatctcaacagaacccaagattacgaatacaggcaacgcgaagacaagaactattcatgtagaaggaatgcattgtaagtcatgtgtgcacaacatagagggctccatatctgaacttccaggtgttcacaatattaaagtctctcttgagaacaaaaatgctttaataacttttattgagggcatgacaagcctattgactttgaaagaagccattgaagcacttccaccaggacattttaaggttaccattccagtagatgatgaattgagtccggctttgagatcaaaatcaaccattcagtcatccgctaaggaaggccacaggaccacggcaaagaccactttaatcagtattggaggaatgacgtgtgggtcttgtgtgtcaaccattgaaagcatgatctctcaaagaaagggagtacaatccatatcagtgtctttacttgagcggatgggaacaattctctacacccagacggaaacgaattctgaggaattacgagcagctatagaggacatgggctttggtgctactattatatccgattccccattgactatgaacattaaccattcaagttctacaagatctgatctaaaccaaaagttaccagagacaaccaagaaagtaaatctgcatcaagattacattgtggatgttctccctaagaagcctcaaccaggcatccctctaatggaaaatgctacaccccaaaaatgcatcttacaggtcactgggatgacgtgtgcctcatgtgtctccaacatcgagaggaacctgaagaagaaaacgggtattgtttcagtgcttgttgcactgatggctggtaaagcagaggtcaaatacatagcagaccagattgaaccaactgaaattgcacaatttatcgaaagtctgggctttggagctgttgttttggaagactgcacggctacccatggcagtattgagctggttattacagggatgacatgtgcctcatgtgttcacaatattgaatcacggctgactggaacgccaggtattctacaggcctccgtggctcttgccacctgcaaagcgcaagtcaaattcgatcctgaaattgttggtcctcgagacatcgtacaagtcattgaggggattggtttccaagcttctttagctaaaagagatccctcagctcacaacctggaccataaagaggaaatcagacaatggagaaagtcctttttgttcagccttatattcggcatccccgtgatctgcatcatggtctacatgttaattgcccaccatggaccttcggtgctggacaagaacatcttacctggtttatctataatgaacttcattttctttatactttgcacattagtccagtcctttggaggatggtacttctatgtccaggcttacaagtcattgaagcacaaagcagctaacatggatgtactcattgtcctggctacaaccatcgcctatatctactctgtggttatcctgatcgtggccattgtggagaagtctgagcagagcccagagaccttcttcgatacaccccccatgctgttcatgttcattgctctggggagatggctggaacacatagcaaagagtaagacatcggaagctctcgccaaactaatatccttgcaagctacagaggccacagtcgtgaccctcggacccaattactcagtggtcagggaagaacaggtggctgtggagctggtccagagaggagatattgtgaaagtcgtacctggcgggaaatttccagtggacgggaaagttattgaaggaacatctatggccgatgagtctctcatcacaggtgagcctatgcctgttaggaagaagccaggaagcattgttattgctgggtccattaatgctcacggatcagtccttgtagaagcaactcacgtaggctctgacaccaccctggcccaaattgttaagctagtagaagaggcccagatgtcaaaggcacccatccagcagctggcagataagataagtggctactttgtcccttttattattagtatttccattgtgacattgatcggatggaccactgttggctttgtgaattttgatgtcatactgaaatatttcccagattacagtaaaactatttcaaagactgagataatcatacgagtcggcttccagactgccatcactgtgctgtccattgcctgtccctgtgctttaggcttggctactcccacagccgtcatggtgggtactggagtggctgcacaaaatggcatcctgatcaaaggtggagagcccctggagatggcacataagataaatacagtgatgtttgataagacaggaacaataacacacggggttcctaaagtcatgagagtcctactactgggtgatccaggcagtatgcccctgaaaagaatgctggccgtcattggtactgcagaggccagcagtgagcatcccttgggaatggcagtggcaaagtactgcaaggaggagctcggtacagaatcgctaggatattgtactgatttccaggcggttccaggatgtgggatcagctgtaaagtgaataatgtggaaagtgtcctggtacagagtgaagagggcttgaatgaacagaatgtttacaagagtggcctcgtccatcctcaagaagacaactccttaatcattgctcctgaactacaaggtgcttcagctccacaacctcattctgtgttaatcggcaaccgggaatggatgagacgcaacggcttacacatttctagtgatgtagatgaggccatgaccagtcacgaaacgaaaggacagactgcagtgctagtagctatcgatggcgcactatgtggaatggtcgctattgcagatacagtgaagcaggaggcagctctcgcggtacacacattgaaagctatgggagtggatgtggtactgatcacaggagacaaccggaagaccgccaaagcaattgccactcaggttgggatcaagaaggtgtttgcagaagttcttccttctcacaaggtggcaaaagtccaagctttgcaaagcgaggggaagagggtagccatggtgggcgatggagtcaatgactcccctgcattagccagagctgatattgggattgccatcggaactggaactgatgttgccattgaagccgcggacattgttctcatcagaaacgatttacttgatgttgttgccagcattcacctctcaaagaggacagtcagaagaataagaataaacttcatgtttgccctcatctataatcttctaggcatccctattgcagcaggtgtattcctgccagtaggtctggtgttacaaccatggatgggatcagcggctatggcggcctcctctgtctctgtggtcttgtcttctttgcagctaaaatgctacactaaaccagactcggataaatatgaagctcgagcccaggggcttatgaaaccacttaacccctcacagataagcgtccatgttgggatggatgaccgaagaagggatatcccaatgaccagtacctgggaccagatcagcttcatcagtcagtcaagcaggagctctcgacagaattcatcagtaggcgacagacaagacaagaggtctctattggtcagtgaggccgatgaggatcagtacatgtagcctggtggtccattgcctataatatatcgtcagttatctgtaaaggaatcatgaacaaaacttatacattagagcaaaatggatataattatatggattatgacatgccaatgtacattaaataggttgagccttaggacttattcacacagctgtgacattttttactgacaaatgtccttaaaaaacagccatgtctgtctgtgcaagtcagtggacgggacttattcacatggcagtgaataatggtaatttgacagccatttctgaaatgatcatcacatggtcactatggaactcctgtatatcaaagggtctattgatctatgtccgttttgatgtctttagtgtattggtatactttatttcatggcaatgaacacatcatctaataacaagaagacagatatgttcattacaaatacaaccacatataagagtattaggtcaggcacaaccacctataacacgagtgttaggtcgggcacaaccacctatgatacaagtgctaggtcgggcacaaccatctatgacatgagtgttaggtcgggcacaaccatctatgacatgagtgttaggtcgggcacaaccacctatgatacaagtgttaggtcgggcacaaccacctatgatacaagtgttaggtcgggcacaaccacctatgatacaagtgctaggtcgggcacaaccacctataacaagagcgttcggtttcttacttattgttctttaattttcaaaatctatatgccttgttattttgaatatacagtccattttgcaaagcctcactttcctctaccattgtgtactgtgacaatgtcatttctgtgcctttcatgtaacctgtacatgtgctgagattacttaataaagctttatttaaagttcatac
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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