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2025-10-28 05:54:55, GGRNA.v2 : RefSeq release 232 (Sep, 2025)

LOCUS       XM_075265899            5377 bp    mRNA    linear   VRT 14-JUL-2025
DEFINITION  PREDICTED: Leptodactylus fuscus ATPase copper transporting beta
            (ATP7B), mRNA.
ACCESSION   XM_075265899
VERSION     XM_075265899.1
DBLINK      BioProject: PRJNA1288464
KEYWORDS    RefSeq.
SOURCE      Leptodactylus fuscus (rufous frog)
  ORGANISM  Leptodactylus fuscus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea;
            Leptodactylidae; Leptodactylinae; Leptodactylus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_134266) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_031893055.1-RS_2025_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.4
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/10/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5377
                     /organism="Leptodactylus fuscus"
                     /mol_type="mRNA"
                     /isolate="aLepFus1"
                     /db_xref="taxon:238119"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="liver"
                     /dev_stage="adult"
                     /geo_loc_name="Colombia: Bogota"
                     /lat_lon="4.60064 N 74.06604 W"
                     /collection_date="2020-01-25"
                     /collected_by="Melissa Hernandez"
     gene            1..5377
                     /gene="ATP7B"
                     /note="ATPase copper transporting beta; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 16 Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:142195841"
     CDS             1..4482
                     /gene="ATP7B"
                     /codon_start=1
                     /product="copper-transporting ATPase 2"
                     /protein_id="XP_075122000.1"
                     /db_xref="GeneID:142195841"
                     /translation="
MILAKDNIVISEEEVKPKDNNIALTLQRKSLDSTRHVNPNSEDCLDVHRRVESGKMASDHGNLKKQTSEDYGIIKTNHTLSPRFAFDNRGYEGSLNDLTYSNPDVTSMVVEIIGMTCQSCVQSIEGRISKVPGVVSIKVDLDQGNATVCYIPSEITPQKICEEIEDMGFDAHLQEYKEPSTSLKGAHYKEDVVKIRVEGMTCQSCVNTIEGKIGKIQGVEKIKVSLANQEAVIVYCPHYIQPEDLRKHIDDMGFVASVKSKPDPSKLGTINIERLQSISTEPKITNTGNAKTRTIHVEGMHCKSCVHNIEGSISELPGVHNIKVSLENKNALITFIEGMTSLLTLKEAIEALPPGHFKVTIPVDDELSPALRSKSTIQSSAKEGHRTTAKTTLISIGGMTCGSCVSTIESMISQRKGVQSISVSLLERMGTILYTQTETNSEELRAAIEDMGFGATIISDSPLTMNINHSSSTRSDLNQKLPETTKKVNLHQDYIVDVLPKKPQPGIPLMENATPQKCILQVTGMTCASCVSNIERNLKKKTGIVSVLVALMAGKAEVKYIADQIEPTEIAQFIESLGFGAVVLEDCTATHGSIELVITGMTCASCVHNIESRLTGTPGILQASVALATCKAQVKFDPEIVGPRDIVQVIEGIGFQASLAKRDPSAHNLDHKEEIRQWRKSFLFSLIFGIPVICIMVYMLIAHHGPSVLDKNILPGLSIMNFIFFILCTLVQSFGGWYFYVQAYKSLKHKAANMDVLIVLATTIAYIYSVVILIVAIVEKSEQSPETFFDTPPMLFMFIALGRWLEHIAKSKTSEALAKLISLQATEATVVTLGPNYSVVREEQVAVELVQRGDIVKVVPGGKFPVDGKVIEGTSMADESLITGEPMPVRKKPGSIVIAGSINAHGSVLVEATHVGSDTTLAQIVKLVEEAQMSKAPIQQLADKISGYFVPFIISISIVTLIGWTTVGFVNFDVILKYFPDYSKTISKTEIIIRVGFQTAITVLSIACPCALGLATPTAVMVGTGVAAQNGILIKGGEPLEMAHKINTVMFDKTGTITHGVPKVMRVLLLGDPGSMPLKRMLAVIGTAEASSEHPLGMAVAKYCKEELGTESLGYCTDFQAVPGCGISCKVNNVESVLVQSEEGLNEQNVYKSGLVHPQEDNSLIIAPELQGASAPQPHSVLIGNREWMRRNGLHISSDVDEAMTSHETKGQTAVLVAIDGALCGMVAIADTVKQEAALAVHTLKAMGVDVVLITGDNRKTAKAIATQVGIKKVFAEVLPSHKVAKVQALQSEGKRVAMVGDGVNDSPALARADIGIAIGTGTDVAIEAADIVLIRNDLLDVVASIHLSKRTVRRIRINFMFALIYNLLGIPIAAGVFLPVGLVLQPWMGSAAMAASSVSVVLSSLQLKCYTKPDSDKYEARAQGLMKPLNPSQISVHVGMDDRRRDIPMTSTWDQISFISQSSRSSRQNSSVGDRQDKRSLLVSEADEDQYM"
ORIGIN      
atgattttggctaaggataatattgtcatcagcgaagaagaggttaaacctaaggataacaatatagctctgaccctccagagaaagtctcttgatagtactcgacatgtaaatcctaactcagaggattgtctggacgttcatagaagggtagaatcaggaaaaatggccagcgatcatggaaacctcaaaaaacagacctctgaagattatggcattatcaagacaaaccatacactatctccaagatttgcttttgacaacagaggctatgagggtagcctcaatgacctcacctactcaaaccctgatgttacttcaatggtggtggaaattataggaatgacctgccagtcatgtgtacaatcaattgaaggaaggatctcaaaggtaccaggtgtggtcagcataaaagttgacctcgatcagggcaatgccaccgtatgttacataccttctgaaataacacctcagaagatctgtgaggaaattgaagatatgggttttgatgcccaccttcaagaatacaaagaaccttcaacatccttgaaaggtgctcactataaagaggatgtggttaaaattagagtagagggtatgacgtgtcagtcatgtgtcaatacaattgagggaaaaattgggaaaattcaaggagttgaaaaaataaaggtttctctggcaaaccaagaagcagtgattgtttattgcccacactacatccagccagaagatctgcggaaacatatagacgatatggggtttgtggcttctgtcaaaagcaaaccggatccatcaaagcttggaacaattaacatagaacgcttacaaagtatctcaacagaacccaagattacgaatacaggcaacgcgaagacaagaactattcatgtagaaggaatgcattgtaagtcatgtgtgcacaacatagagggctccatatctgaacttccaggtgttcacaatattaaagtctctcttgagaacaaaaatgctttaataacttttattgagggcatgacaagcctattgactttgaaagaagccattgaagcacttccaccaggacattttaaggttaccattccagtagatgatgaattgagtccggctttgagatcaaaatcaaccattcagtcatccgctaaggaaggccacaggaccacggcaaagaccactttaatcagtattggaggaatgacgtgtgggtcttgtgtgtcaaccattgaaagcatgatctctcaaagaaagggagtacaatccatatcagtgtctttacttgagcggatgggaacaattctctacacccagacggaaacgaattctgaggaattacgagcagctatagaggacatgggctttggtgctactattatatccgattccccattgactatgaacattaaccattcaagttctacaagatctgatctaaaccaaaagttaccagagacaaccaagaaagtaaatctgcatcaagattacattgtggatgttctccctaagaagcctcaaccaggcatccctctaatggaaaatgctacaccccaaaaatgcatcttacaggtcactgggatgacgtgtgcctcatgtgtctccaacatcgagaggaacctgaagaagaaaacgggtattgtttcagtgcttgttgcactgatggctggtaaagcagaggtcaaatacatagcagaccagattgaaccaactgaaattgcacaatttatcgaaagtctgggctttggagctgttgttttggaagactgcacggctacccatggcagtattgagctggttattacagggatgacatgtgcctcatgtgttcacaatattgaatcacggctgactggaacgccaggtattctacaggcctccgtggctcttgccacctgcaaagcgcaagtcaaattcgatcctgaaattgttggtcctcgagacatcgtacaagtcattgaggggattggtttccaagcttctttagctaaaagagatccctcagctcacaacctggaccataaagaggaaatcagacaatggagaaagtcctttttgttcagccttatattcggcatccccgtgatctgcatcatggtctacatgttaattgcccaccatggaccttcggtgctggacaagaacatcttacctggtttatctataatgaacttcattttctttatactttgcacattagtccagtcctttggaggatggtacttctatgtccaggcttacaagtcattgaagcacaaagcagctaacatggatgtactcattgtcctggctacaaccatcgcctatatctactctgtggttatcctgatcgtggccattgtggagaagtctgagcagagcccagagaccttcttcgatacaccccccatgctgttcatgttcattgctctggggagatggctggaacacatagcaaagagtaagacatcggaagctctcgccaaactaatatccttgcaagctacagaggccacagtcgtgaccctcggacccaattactcagtggtcagggaagaacaggtggctgtggagctggtccagagaggagatattgtgaaagtcgtacctggcgggaaatttccagtggacgggaaagttattgaaggaacatctatggccgatgagtctctcatcacaggtgagcctatgcctgttaggaagaagccaggaagcattgttattgctgggtccattaatgctcacggatcagtccttgtagaagcaactcacgtaggctctgacaccaccctggcccaaattgttaagctagtagaagaggcccagatgtcaaaggcacccatccagcagctggcagataagataagtggctactttgtcccttttattattagtatttccattgtgacattgatcggatggaccactgttggctttgtgaattttgatgtcatactgaaatatttcccagattacagtaaaactatttcaaagactgagataatcatacgagtcggcttccagactgccatcactgtgctgtccattgcctgtccctgtgctttaggcttggctactcccacagccgtcatggtgggtactggagtggctgcacaaaatggcatcctgatcaaaggtggagagcccctggagatggcacataagataaatacagtgatgtttgataagacaggaacaataacacacggggttcctaaagtcatgagagtcctactactgggtgatccaggcagtatgcccctgaaaagaatgctggccgtcattggtactgcagaggccagcagtgagcatcccttgggaatggcagtggcaaagtactgcaaggaggagctcggtacagaatcgctaggatattgtactgatttccaggcggttccaggatgtgggatcagctgtaaagtgaataatgtggaaagtgtcctggtacagagtgaagagggcttgaatgaacagaatgtttacaagagtggcctcgtccatcctcaagaagacaactccttaatcattgctcctgaactacaaggtgcttcagctccacaacctcattctgtgttaatcggcaaccgggaatggatgagacgcaacggcttacacatttctagtgatgtagatgaggccatgaccagtcacgaaacgaaaggacagactgcagtgctagtagctatcgatggcgcactatgtggaatggtcgctattgcagatacagtgaagcaggaggcagctctcgcggtacacacattgaaagctatgggagtggatgtggtactgatcacaggagacaaccggaagaccgccaaagcaattgccactcaggttgggatcaagaaggtgtttgcagaagttcttccttctcacaaggtggcaaaagtccaagctttgcaaagcgaggggaagagggtagccatggtgggcgatggagtcaatgactcccctgcattagccagagctgatattgggattgccatcggaactggaactgatgttgccattgaagccgcggacattgttctcatcagaaacgatttacttgatgttgttgccagcattcacctctcaaagaggacagtcagaagaataagaataaacttcatgtttgccctcatctataatcttctaggcatccctattgcagcaggtgtattcctgccagtaggtctggtgttacaaccatggatgggatcagcggctatggcggcctcctctgtctctgtggtcttgtcttctttgcagctaaaatgctacactaaaccagactcggataaatatgaagctcgagcccaggggcttatgaaaccacttaacccctcacagataagcgtccatgttgggatggatgaccgaagaagggatatcccaatgaccagtacctgggaccagatcagcttcatcagtcagtcaagcaggagctctcgacagaattcatcagtaggcgacagacaagacaagaggtctctattggtcagtgaggccgatgaggatcagtacatgtagcctggtggtccattgcctataatatatcgtcagttatctgtaaaggaatcatgaacaaaacttatacattagagcaaaatggatataattatatggattatgacatgccaatgtacattaaataggttgagccttaggacttattcacacagctgtgacattttttactgacaaatgtccttaaaaaacagccatgtctgtctgtgcaagtcagtggacgggacttattcacatggcagtgaataatggtaatttgacagccatttctgaaatgatcatcacatggtcactatggaactcctgtatatcaaagggtctattgatctatgtccgttttgatgtctttagtgtattggtatactttatttcatggcaatgaacacatcatctaataacaagaagacagatatgttcattacaaatacaaccacatataagagtattaggtcaggcacaaccacctataacacgagtgttaggtcgggcacaaccacctatgatacaagtgctaggtcgggcacaaccatctatgacatgagtgttaggtcgggcacaaccatctatgacatgagtgttaggtcgggcacaaccacctatgatacaagtgttaggtcgggcacaaccacctatgatacaagtgttaggtcgggcacaaccacctatgatacaagtgctaggtcgggcacaaccacctataacaagagcgttcggtttcttacttattgttctttaattttcaaaatctatatgccttgttattttgaatatacagtccattttgcaaagcctcactttcctctaccattgtgtactgtgacaatgtcatttctgtgcctttcatgtaacctgtacatgtgctgagattacttaataaagctttatttaaagttcatac
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]