ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2025-10-28 05:55:15, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_075199066 4323 bp mRNA linear VRT 13-JUL-2025
DEFINITION PREDICTED: Mixophyes fleayi ATPase copper transporting beta
(ATP7B), transcript variant X3, mRNA.
ACCESSION XM_075199066
VERSION XM_075199066.1
DBLINK BioProject: PRJNA1289907
KEYWORDS RefSeq.
SOURCE Mixophyes fleayi (Fleay's barred frog)
ORGANISM Mixophyes fleayi
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Amphibia; Batrachia; Anura; Neobatrachia; Myobatrachoidea;
Limnodynastidae; Mixophyes.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_134403) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_038048845.1-RS_2025_07
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.4
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 07/11/2025
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..4323
/organism="Mixophyes fleayi"
/mol_type="mRNA"
/isolate="aMixFle1"
/db_xref="taxon:3061075"
/chromosome="2"
/sex="male"
/tissue_type="muscle"
/dev_stage="juvenile"
/geo_loc_name="Australia: New South Wales"
/lat_lon="28.37763 S 153.06856 E"
/collection_date="2019-02-23"
/collected_by="Laura Grogan (The Frog Research Team)"
gene 1..4323
/gene="ATP7B"
/note="ATPase copper transporting beta; Derived by
automated computational analysis using gene prediction
method: Gnomon. Supporting evidence includes similarity
to: 3 Proteins, and 100% coverage of the annotated genomic
feature by RNAseq alignments, including 1 sample with
support for all annotated introns"
/db_xref="GeneID:142141009"
CDS 146..4210
/gene="ATP7B"
/codon_start=1
/product="copper-transporting ATPase 2 isoform X2"
/protein_id="XP_075055167.1"
/db_xref="GeneID:142141009"
/translation="
MMPRRTFLEDEEEEEVRLLRTEEEYVKKPSANLSPHRYVSKTSSYGVSKSNHAPASTKPRFAFDNRGYEGSLDNLTHSSSDVSSLVVGIEGMTCQSCVQSIEGRISKIPSIIRIKVYLEQSNATIYFIPSEITPQKICEEIEDMGFDANIQECKETSTFTKGMQYREDLVKIRVEGMTCQSCVNTIEGKIGKIQGVEKIKVSLTSQEAVIMYYPQYIHPEELRKHIDDMGFVASVKSKPDPSKIGTIDIERLQTLSTQHKVTNSGGAAIAGSKEEITIHIDGMHCKSCVHSIEGSISDLPGVGSIKVSLENKTAVICFLKSITDLLTLKKTIEELPPGNFKVTLPVGGDLSPTSRSKSNLHLSYKQNQLAATDKAVISIGGMTCGSCVSSIESMISQRKGIQSISVSLPGGVGTIYYSHTETNSEELRTTIEDMGFDATLVSDSPLSVSNNQPSSTEPEVKKNSPDMTKTLNLHQDYILDVLPKKPDPDIPLRDNTTAQKCVLQITGMTCASCVSNIERNLKKKDGIISVLVALMAGKAEVKYIANIIEPSEIAQLIENLGFGAVVLDGCTATHGSIELVIIGMTCASCVHNIESRLMRTRGILQASVALATCKAQVKFDPEMIGLRDIIQVIEVIGFQASLPKRDLTAHNLDHKQEIRQWRKSFLFSLIFGIPVICIMIYMLFAHNNHYGPSAMDTNIIPGLSITNLLFFILCTLVQSFGGWYFYVQAYKSLKHKATNMDVLIVLATTIAYIYSVCILIVAIAEESQQSPETFFDTPPMLFMFIALGRWLEHIAKSKTSEALAKLISLQATEATVVTLGSNHSVVREEQVAVELVQRGDIVKVVPGGKFPVDGKVIEGTSMADESLITGEPMPVRKKPGSMVIAGSINAHGSVLVEATHVGSDTTLAQIVKLVEEAQMSKAPIQQLADKISGYFVPFIICVSILTLMAWMTVGFVNFDVIIKYFPSYSKIISKAEVIIRVAFQTSITVLSIACPCALGLATPTAVMVGTGVAAQNGILIKGGEPLEMAHKINTVMFDKTGTITQGVPKVMRVLLLGDVVRMPLKRMLAVVGTAEASSEHPLGMAVTKFCREELGTESLGYCTDFQAVPGCGIRCKVNNVESVLMQSEEGLNEQNIYKSGFTHPQEDTFLIMAPDLQGAAAPEPHSVLIGNREWMRRNGLHISSDVDEAMTDHERKGQTAVLVAIDGALCGMIAIADMVKQEAALAVHTLKAMGVDVVLITGDNRKTAKAIATQVGIRKVFAEVLPSHKVAKVQELQNEGKRVAMVGDGVNDSPALARADIGIAIGTGTDVAIEAADIVLIRVSFCHWGWCYSHGWGQQQWQLPLSLWCYLHCS"
ORIGIN
tgcatgttataataaaggcatcacaggctggctcctagtcatcacaaagtttatgagtccatagtccaagtctctgcatacaacactgaatggcagaagtgcacaacttgtcctggagggagctcagagggaactgcctgtaaagatgatgcctagaagaacatttctggaggatgaggaggaggaggaagtacgattattacgtactgaagaggaatatgtaaagaaacctagtgcgaatctttcacctcaccgctacgtgagcaagacttcaagttatggtgtttccaagagtaaccatgcaccagcatcaacaaaaccaagatttgctttcgacaacaggggctacgaaggtagcctagataaccttacccactcctcttctgatgtcagttccttggtggtgggaatagaaggcatgacctgtcaatcgtgtgttcagtccattgagggaaggatctccaaaataccaagtattattagaataaaggtgtatctggaacaaagcaatgccacaatatacttcataccttcagaaataacaccacaaaagatttgtgaggaaattgaagatatgggttttgatgcaaacatacaagagtgcaaagagacctcaacctttaccaaaggcatgcagtatagagaagatcttgtaaagataagagtagagggcatgacgtgtcagtcttgtgtcaacaccattgaagggaaaattgggaaaattcagggagtagagaaaataaaagtgtctcttacaagccaggaagctgtgattatgtattatccacagtacattcatccagaagagctgaggaaacacatagatgatatgggatttgtggcatcagtcaaaagcaagccagatccatcaaagattggaacgattgacatagagcgtttgcagactctctctactcaacacaaggtcacaaactctggtggagctgcaatagcaggcagtaaagaggaaataactattcatatagatgggatgcattgtaaatcttgtgtgcacagtatagaaggatccatatctgacctccctggtgtagggagtatcaaagtctcccttgaaaacaaaactgctgtaatttgttttctcaaaagcatcactgacctgttgactttaaaaaaaacaattgaagaacttcctccaggaaattttaaggttacccttccagtggggggagatctgagccctacatcacgatcaaagtctaaccttcacttatcctataaacaaaaccagcttgcggctacagacaaggctgttatcagcatcggaggaatgacctgtggatcctgtgtctcatcaatcgaaagcatgatctcacaaaggaaaggcatacagtccatatcggtttcattacctggaggggtaggaacaatttactatagtcatacggaaacaaactctgaggaattaagaacaaccatagaagacatgggctttgacgctacacttgtttctgattccccattgtctgtcagcaataaccagccaagctccacagagcctgaagtaaagaaaaattccccagatatgaccaagactttaaatcttcatcaagattatattttagatgttctccctaagaagcctgacccagacatccctctgagagacaacactacagctcagaaatgtgttttacagatcacagggatgacgtgcgcttcttgtgtgtccaacattgagaggaacctgaagaaaaaagatggtataatttcagtgctagttgcacttatggctggtaaagcagaggtcaagtacatagcgaacataattgagccaagtgaaattgcacaacttattgaaaacctggggttcggagcagtggtcttggatggttgcacagcgacacatggcagcattgagcttgttatcatagggatgacctgcgcatcatgcgttcacaacattgagtcccgactgatgagaacaaggggcattctgcaggcctctgtggctcttgctacctgcaaagctcaagtcaagtttgatccagaaatgattggtctaagagacatcatccaagttattgaggtgattggttttcaagcttccttacctaaaagagatctaacagctcacaacctggatcataaacaggaaataagacagtggagaaagtccttcttgttcagtcttatatttgggatccctgtcatctgcattatgatctacatgttatttgctcacaataatcactatggcccttcagcgatggacacaaacattatccccgggctatccatcacgaacctcctcttctttatactgtgtacactagtccagtcctttggaggatggtacttttatgtccaggcttacaagtctctgaaacacaaagcaaccaacatggacgtactcatcgtcctagccaccaccatcgcctacatttactcggtgtgtatcctgattgtggccattgcagaggagtctcagcagagcccagagaccttctttgatacaccccctatgctgttcatgttcattgctctggggagatggctggagcacatagcaaagagtaaaacatcggaggctcttgccaagctcatatccttgcaagctaccgaggcgacagtagtaactcttggatccaatcactcagttgtgagggaagagcaggtggctgtggaactggtccagagaggagatattgtgaaggttgtacctgggggcaagtttccagttgatgggaaagtaattgaagggacatctatggcggatgagtctcttattacgggtgagcctatgcctgtcaggaagaagccgggaagcatggttattgccgggtccattaatgctcatggttctgtgcttgtggaagcaactcatgttggctctgacaccacattggcacaaatcgttaagttagtggaagaagcgcaaatgtccaaggctccgatccaacagttggcggataaaataagtggatactttgtcccgtttataatttgcgtttccattttgacactgatggcctggatgacagttggctttgtgaattttgatgtcataattaaatattttcctagttacagcaaaataatctcaaaggctgaagtgataattcgggtggcgttccagacttccatcactgtgctgtctattgcctgcccttgtgctttaggtctggctacacccactgcggtgatggtgggcactggagtggctgcacaaaacggtatcctcatcaaaggtggagaacctctggagatggcgcacaagataaatacggtaatgtttgataaaactgggaccataacacaaggggtccctaaagtcatgagggtcctgctattgggtgatgtagtcaggatgcctctgaaaaggatgctggccgtggttggaaccgcagaggccagcagtgagcatcccctggggatggcagtcacaaaattctgcagagaggagctgggtacagaatccctgggatattgtacagatttccaggctgtcccaggatgtgggatccgttgtaaagtgaacaatgtagaaagtgtcctgatgcagagtgaagagggtttgaatgagcagaatatctacaagagtggcttcacccatccacaagaagacacatttttgatcatggcaccagacctacaaggtgccgcagccccagaacctcactctgttttaatcgggaaccgggaatggatgagacgcaacggcttacacatatccagcgatgtggatgaggcaatgactgatcatgaaaggaaaggacagacagcagtgctagtagctatagatggtgcattgtgtggaatgatcgctatagcggacatggtgaagcaggaggcagctcttgctgtgcacacactgaaagccatgggagtggacgtggtactgatcactggggacaaccggaaaactgccaaagcaattgctacccaggttgggatcaggaaggtgtttgcagaagtccttccctctcacaaggtggccaaagtccaagaactacagaacgaggggaagagagtggccatggtgggagatggcgtcaatgactccccagcgctggccagagctgatatcggtatcgccattggaactggaactgacgtggccatcgaagctgcagatatcgtcctcatcagagtgtctttctgccactggggttggtgttacagccatggatggggtcagcagcaatggcagcttcctctgtctctgtggtgttatcttcactgcagctgaagtgctacagaaaaccagactcagacagatatgaagcacaagcccagggcctcatgaagccactcaccccatcacagataagtgttcatattgggatggatgataggagaagg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]