LOCUS       XM_075128263            7307 bp    mRNA    linear   VRT 11-JUL-2025
DEFINITION  PREDICTED: Caretta caretta ATPase copper transporting beta (ATP7B),
            transcript variant X6, mRNA.
ACCESSION   XM_075128263
VERSION     XM_075128263.1
DBLINK      BioProject: PRJNA1285375
KEYWORDS    RefSeq.
SOURCE      Caretta caretta (Loggerhead turtle)
  ORGANISM  Caretta caretta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira;
            Americhelydia; Chelonioidea; Cheloniidae; Caretta.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_134206) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_965140235.1-RS_2025_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.4
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/09/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7307
                     /organism="Caretta caretta"
                     /mol_type="mRNA"
                     /isolate="rCarCar2"
                     /db_xref="taxon:8467"
                     /chromosome="1"
                     /geo_loc_name="USA: San Diego, California"
                     /collection_date="2021-04-26"
     gene            1..7307
                     /gene="ATP7B"
                     /note="ATPase copper transporting beta; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:125636143"
     CDS             472..4854
                     /gene="ATP7B"
                     /codon_start=1
                     /product="copper-transporting ATPase 2 isoform X6"
                     /protein_id="XP_074984364.1"
                     /db_xref="GeneID:125636143"
                     /translation="

MSSSPPSCVWEPTMKQNFAFDNIGYEGSTENMPSQDMLPQMSTVTVNILGMTCQSCVQSIEGRISKVKGVVSTKVSLEQSNAVVKHIQSEIGPQEICQEIGDIGFDASIAEGRTTPLSVRSTSLGEALMKLRVEGMTCQSCVNTIEGKIGKLHGVLRIKVSLSNQEAVIAYQPYIIQPEDLKNHIDNIGYESTIKSKLAPLKLGTIDLERLQTTSTKKTPASLNNSNVKPAVGKMNSTTTMTLGVEGMHCRSCVKNIEGNISGLPGVQSIKVSLEYKNAVVQFNPNVITPVSLQQAIEALQPGNFKVSLPNGVEANNGGLLSKAAFSSPQLRSTFSGDQLTSTTVLSIDGMTCGSCVQSIEGTMSQRKGVQHISVSLVERTGTIHYNSTVTNSEELRGAIEDMGFDASILTDTTTWKYMDQPLFRDATIHPNAWESASQRTENVSESSHQGYMSDVQPKNSSLDSPKPPSVATTEKCFMQITGMTCASCVSNIERNLQKEDGIVSVLVALMAGKAEIKYKPESIQPLEIVQLIQNLGFDATVIEDHTDTDGNVELIITGMTCASCVHNIESKLTRTNGIFYASVALATSKAHIQFDPEIIGPRDIIQIIEGIGFHASLAKRDPNAHNLDHKKEIKQWRKSFLCSLVFGIPVLILMIYMLIPAGQQHGSMVLERNLIPGLSILNLLFFVLCTLVQFLGGWYFYVQAYKSLKHKTANMDVLIVLATTIAYIYSCVILVVAIAEKAEESPVTFFDTPPMLFVFISLGRWLEHIAKSKTSEALAKLMSLQATEATIVTLGPDHSVIREEQVAVELVQRGDIVKVVPGGKFPVDGKVIEGSSMADESLITGEAMPVTKKPGSTVIAGSINAHGSVLVNATHVGSDTTLAQIVKLVEEAQMSKAPIQQLADKFSGYFVPFIIIISTATLLVWITIGFINFDVVQKYFPHQNKHLSKAEVIVRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITCGVPKVMRMLLLGDTAKLSLKKVLAIVGTAEASSEHPLGVAVTKYCKEELGTESLGYCTDFQAVPGCGISCKVRNVEAILGQSEQSLSEQNAYLSSVSTVSLGHSSSIMVSESDGEAAPLTYSVLIGNREWMKRNGLLISSDVNDAMTGHEMKGQTAILVAIDGALCGMIAIADTVKQEAALAVHTLQNMGIDVVLITGDNRKTAKAIATQVGIKKVFAEVLPSHKVAKVQELQNEGKKVAMVGDGVNDSPALAGADIGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRINLVLALIYNLLGIPIAAGVFMPIGIVLQPWMGSAAMAASSVSVVLSSLQLKCYKKPGTERYEAKAQGHMKPLTPSQISVHIGMDDRRRDSPRPTAWDQISQVSLSSLTSNKLHRHGLFREEEGGKWSLLTNDRDEEQYI"

     polyA_site      7307
                     /gene="ATP7B"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gggcggggcagggggcgtgccagggtgggggccgtgctcccgggtttgcacagaggagcagtgaagataaggcaagaggatggtgggtggtgtaccccgggccacagaccacggtgtataacttcacattacttcctacaccactgggcattatttctgcatgtgtctcttcattatggcaaaatgtgtgaagctggctaaagcatggaaggcaaaatctaatcatctgcaatacagagaatttctgaagtcctatgtggagctgaagataaatgtcttcatctccattgtaatatcggcagtgtatcacatgacagatccattccaggttgagaatgaagggaggaaagaaatgtctaggggacactcataggtttaaaccagtatggtagccagaacagggacccagccctcaccttgagtgaaatcttgagcctggtgaagtcagtggccaaacttcaggctttgtctatgtctagctcccctcctagttgtgtatgggaaccaaccatgaagcagaattttgcctttgacaacatcggctacgaagggagcactgaaaatatgccctctcaagatatgcttcctcaaatgagcaccgtcacggtcaatattttgggtatgacttgccagtcttgtgtgcagtcgatagagggcagaatttccaaggtgaagggcgttgtgagcaccaaggtctcccttgagcagagcaatgctgtagtaaaacatatacagtcagaaataggtccccaagagatttgccaggaaattggagacataggctttgatgccagcattgcagaaggaagaactacaccattatctgtaagatcgacatccttgggagaagcactaatgaagctgcgggtagaaggtatgacatgccaatcttgtgtcaacaccattgaaggaaagattggaaaactacatggcgtgttgagaatcaaagtctccctcagtaaccaagaagcagtcattgcttaccagccttacatcattcaacctgaagacctcaaaaaccacatagataacattgggtatgaaagcactattaagagcaagctagccccattaaagcttggtacgattgatctagaacgcttgcagactacaagcacaaagaaaactccagccagcctgaacaatagtaatgtgaagccagcggtaggcaaaatgaatagtacaacaactatgacgctgggagtagaagggatgcattgcaggtcttgcgtcaaaaacattgaaggaaatatatccggtcttccaggcgtacaaagtattaaagtgtcattggaatataaaaatgctgtcgtgcaatttaacccaaacgtaattaccccagtatctttgcaacaagccattgaggcccttcaacctggtaactttaaagtatccctccctaatggagtggaagcaaataatggagggcttttatcaaaggcagcattttcatcacctcagcttcgtagcacattctctggggatcagctgacaagcacaactgtacttagtattgatggaatgacctgtggatcctgtgtacagtccatagaaggcacaatgtcccaaagaaaaggggtacaacatatatcagtttcgttagttgaaaggactggaaccatacactacaattcaactgtaactaattcagaagagctaagaggcgctatagaggacatgggatttgatgcttccattctcacagataccaccacttggaaatatatggatcagcctcttttcagggacgctacaattcaccctaatgcttgggagtcagcttcccagagaacagaaaatgtttctgaatcctctcatcaaggctacatgtctgatgtccagccaaagaattcttcccttgatagtccaaagccacccagtgtagcaacaacagaaaagtgctttatgcagatcacaggcatgacctgtgcatcatgtgtgtcgaacattgaaagaaatctgcaaaaagaagatggtatcgtttcagtgctagtagcactgatggcaggaaaagcggagataaaatacaagccagagagcattcagcctcttgaaatagtacagctgatccaaaacttgggcttcgatgctacagtcatagaagaccatactgatacagatggcaatgtagagcttattattacggggatgacttgtgcttcctgtgttcacaatattgaatccaaactaaccagaactaatggcatcttctatgcctccgtggcacttgctaccagcaaagctcacatccagtttgatcctgaaatcattggacctcgagatattatacaaattattgagggaattggttttcatgcttccttggccaagagagaccctaatgctcataacttggatcacaaaaaggaaataaaacaatggaggaaatctttcctgtgcagcctagtgtttggaatccctgtcttgatcttaatgatatatatgctaatacctgctggccaacagcatggcagtatggtgctggaacgaaatctaattcctggattatctattttaaatcttctcttctttgtcctgtgcactttagttcagttcctcggtggatggtacttttatgtccaagcttacaaatcactgaagcacaaaacagccaatatggatgtactgattgtgctggccacaactattgcttatatatactcttgtgtgatcttggtggtggctatagctgaaaaagcagaggaaagccccgtcacgttctttgacacaccacctatgttgttcgtattcatttctcttgggagatggttggaacacatagcaaagagtaaaacatcagaagcacttgctaaactaatgtctctccaagctactgaagctaccatagtgactcttggacctgaccactccgtcatcagggaggagcaggtggctgttgaactggttcagcggggtgacattgtaaaagttgtccctggtgggaagttcccagttgatggaaaagtcattgaaggcagctctatggcagatgaatctctcattactggggaagccatgccagtcactaaaaaacctgggagcacagtgattgcaggttctataaatgcgcatggctcagttctcgttaatgcaactcacgttgggtctgacaccaccctggcacaaattgtgaaattggtagaagaagctcagatgtcaaaggcacccatccagcaattggctgataagtttagtggatattttgttccatttatcatcatcatttcaacagcgacattgctagtgtggatcacaattggttttataaactttgatgttgttcagaaatactttcctcatcagaacaaacacctctcaaaagctgaagtaatagtgaggtttgcatttcaaacctcaatcactgtgttgtgcattgcatgtccctgttccttgggcttggctactccaacagctgtgatggtgggcacaggagttgctgctcagaatggtattctcatcaaaggtggaaaacccctggaaatggcccacaagataaagactgtgatgtttgataaaactgggaccatcacctgtggcgttcctaaagtcatgaggatgctcttgctaggggacacggctaagctgtccctaaagaaggtacttgcaattgtcggcactgcagaagccagcagtgagcatcctttaggagtggctgtcactaaatactgtaaagaggaacttggcaccgagagcctgggatactgcacagattttcaggcagtcccaggctgtggaatcagctgtaaagtgcgcaatgtggaagctatactgggccagagtgagcagagtctgagtgagcagaatgcttacctgagcagtgtcagcacggtttcgctgggacacagttcatcgatcatggtctctgaatctgatggtgaagcagcccctctgacctactcagtgctgattggaaatcgtgaatggatgaaacggaacggcttgcttatatccagtgatgttaatgatgcaatgacaggccatgaaatgaaaggacagacagccatattggtagctatagatggtgcgttgtgtggaatgatcgcgatagcagataccgtcaaacaggaggcagcgctcgctgtgcacactctgcaaaatatgggaatagacgtggtgctaataacaggggacaacagaaaaactgcaaaagcaattgctactcaggttggcatcaaaaaggtctttgctgaggttctgccctctcacaaagtcgcaaaggttcaggaactccagaacgaagggaagaaggttgccatggttggagatggagtcaacgattccccggcattggctggagcagacattggcattgctattggaacaggcacggatgttgccattgaagctgcagacgtcgttcttattcgaaatgacttactggacgtggttgctagtattcatctatcaaagaggacagtaagaagaatacgaataaatctggtccttgccttaatttataatctgcttgggatacctatagcggcaggggtgttcatgcctattggaattgttctgcagccatggatggggtcagctgcaatggcagcttcttcagtatctgtggtgctatcttccctgcaactgaaatgctacaagaagccaggaactgaaaggtatgaagcaaaagctcaaggccacatgaagccactgactccttcccaaatcagtgttcacattgggatggacgacaggagacgggattcacccaggccaactgcctgggatcagattagtcaagtgtctctttcctctctgacttcaaacaagctgcacagacatggtttgtttagagaggaagaaggtggcaagtggtcactgctcactaatgaccgagatgaagaacagtacatttaaatgctgcatcccatcactaaacatgaagtcactgtgattcttcaccattggcagcgatgaccacaagacccacataagtataaatggaaccctgatgttccagtttgcaaagcagctcagaaattcagcattagattgtgtgaattatgattttgtcagttcacaaataatttccagtcattgaaaaagcttgagaccctacaatgaattatgccctttacttcttgcacagtgggaagttggagtccacaaagcctaacaggacccctacgttgtggatcagttactgagaatcaaaaccccagcctgtccagtctcattgactctcttgtgcttctttatggaacttctgtgaaaagatttttaaattaaacgacctagaaaatgaatttggcagaaagtgaaaaccattaaaccggacatcaaatagctctatatttggggatcatatttttacatagaatcaaatctagtcatctcaacatgggaaaattttatatttagggctccgacaacatgtgtgtgtttgattagcacaaaaatatattaattgtatattttgctgtgcataaaaattgtaaaattctgtttcaaagatgaccatgtatcttatagcatcactaattgtattttatgaaacgcctccatttgccaaacttgcttgctgtgtgcaactactcctcttaggttttccagttttctcctgtgtgttctttggagccctttcttcccagtaaagttccacctttagacatttgttatgtcttcagatttttcccatgggatgagatcctacaaggcaccggggaccctgcaattcctgttgaaatccacagagtttgagctcctgtcaaggttccttccccactctgaacgctagggtacagatgtggggacctgcatgaaaacctcctaagcatatctttaccagcttaggtcaaaacttccccaaggtacaaaatattccaccctttgtccttggattggccgctaccaccaccaaacaaatactggttactggggaagagctgtttggaaacgtctttccccccaaatacttcccaaaaccttgcaccccacttcctggacaaggtttggtaaaaagcctcaccaatttgcataggtgaccacagacccaaacccttggatctgagaacaatgaaaaagcattcagttttcttacaagaagacttttaatagaaatagaagtaaagaaatcccctctgtaaaatcaggatggtagataccttacagggtaattagattcaaaacatagagaatccctctaggcaaaaccttaagttacaaaaaagatacacagacagaaatagttattctattcagcacaattcttttctcagccatttaaagaaatcctaatctaacacatacctagctagattacttactaaaagttctaagactccattcctggtctatccccggcaaaagcagcatatagacagacagagaccctttgtttttctccctcctcccttttgaaagtatcttgtctcctcattggtcattttggtcaggtgccagcgaggttacctttagcttcttaaccctttacaggtgaggagttttcctctggccaggaggcattttaaagaggtttacccttccctttatatttatgacagctcctctctgtgttttactctggttcaggatagctcaccattttgtcgaatcttttgacactcctgataactgcagtgttcagctatttctttgtgcagagtggcataaatgtggcagtgtaagccatcctggtggctcaattattggtacgctcatgctaatgcactgacgagatgctttccgacttggagtgttttgttcttggtcctgatgggagctagaatgttagaggtgacatgctcagtctctgtgctgatggattagctaacagtgcttttcaaggactctgtggaagttgtggggacacctcaaaagccaaggttcaacagagaggcagggtttgggaggctgttctgtgcaaatggcaggtgagaaagaagtagtaggttaaagcccatctgtaactccactcaaaatccctcttgatatcttgtgttagagctgggtgcttaaagtaaagtccatgcctgaaaactcaccctatcccctttaaaaattactgcattattacagatcacgtcaagctaaaagggactcttacttcatctctgagtttatcttggaccacaaacactacagccaatgcttaaaaattgccactaggaggcaattgtgtatatataacaataattatagtgatgtaacagagaacagagcatgaccaagtgttcatgggattccagggtggttggagggggtgggggggaaagggtttgagattactgtactgtttaaatagcatcacataacacagcttgttggtcgtttaaaataaaagtgtaaaccgattaaaaatggagataata

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