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Previous release (v1)
2025-10-28 05:55:08, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_074859739 4774 bp mRNA linear VRT 28-JUN-2025
DEFINITION PREDICTED: Strix uralensis ATPase copper transporting beta (ATP7B),
transcript variant X1, mRNA.
ACCESSION XM_074859739
VERSION XM_074859739.1
DBLINK BioProject: PRJNA1279222
KEYWORDS RefSeq.
SOURCE Strix uralensis (Ural owl)
ORGANISM Strix uralensis
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes;
Strigidae; Strix.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_133973) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_047716275.1-RS_2025_06
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.4
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 06/26/2025
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..4774
/organism="Strix uralensis"
/mol_type="mRNA"
/isolate="ZFMK-TIS-50842"
/db_xref="taxon:36305"
/chromosome="2"
/sex="male"
/tissue_type="skin"
/geo_loc_name="Germany: Tierpark Hellenthal"
/lat_lon="50.50266713 N 6.43019929 E"
/collection_date="2020-05-04"
gene 1..4774
/gene="ATP7B"
/note="ATPase copper transporting beta; Derived by
automated computational analysis using gene prediction
method: Gnomon. Supporting evidence includes similarity
to: 6 Proteins, and 99% coverage of the annotated genomic
feature by RNAseq alignments"
/db_xref="GeneID:141939629"
CDS 6..4379
/gene="ATP7B"
/codon_start=1
/product="copper-transporting ATPase 2 isoform X1"
/protein_id="XP_074715840.1"
/db_xref="GeneID:141939629"
/translation="
MPEVNTVERQTLSNTDSPPGCELEPTMKHNFAFDNMGYEESFESVPSPSSQEHTVAVNIVGMTCQSCVQSIEGRISKVKGIVSIKVSLEQNNAVIKYLQTEINPEQICQEIQDMGFDANIAEERLTTATVNLSRLREAVVKLRVEGMTCQSCVTNIEGKIRKLHGVAKIKVSLGNQEAVIAYYPYIIQPDDLKSHISNLGYDCTIKSKSTPLKLGVLDLERLQNANPKETPASLESDRVDPLVTEMRSTATIAVQIEGMHCKSCVRNIEENISDLPGIQSIKVSLEHKCAVVQYSPNLITLSALQQAIESLPPGNFKVCLLNVSEANKGASPLPALLYGLFREPLQDMTCTAVIRIDGMTCNSCVQSIEGAISQRQGVQRIAVSLAGRTGTIHYDPVITNGEELRAAIEEMGFDASVLTDTAAGERRHQPDASNAAVQPQPPEPPRQDCASGALPDSPHLDGTNEHSRVTAEKCFLQITGMTCASCVSTIERSLQKEDGIVSVLVALMAGKAEIKYKPEFIQPLEIAQLIQNLGFEATVLEDHAETEGNVELLITGMTCASCVHNIESKLMRTNGIFYASVALATCKAHIQFDPEITGPRDIIKIIEEIGFHASVAKRVPNAHNLDHKKEIQQWRKSFLCSLLFGIPVLILMIYMLIPDGEHHGSTVLEKNLIPGLSILNLLFFVLCTFVQFLGGWYFYVQAYKSLKHKTANMDVLIVLATTIAYVYSCVILMVAIIEKAEKSPVTFFDTPPMLFVFIALGRWLEHIAKSKTSEALAKLISLQATEATVVTLGPDHSIIREEQVAVELVQRGDIVKVVPGGKFPVDGKVVEGSSMADESLITGEAMPVTKKPGSTVIAGSINAHGSVLVNATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADKFSGYFVPFIIIISTVTLIVWITIGFINFDVIQKYFPNQNKHVSKAELILRFAFQTSITVLSIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITCGVPKVMRVLLLGDTAVLSLKKVLVVVGTAEASSEHPLGVAVTKYCKEELGTQSLGYCTNFQAVPGCGISCKVGGVEAVLDMAEEGLNNLDTNRSRDSSAPLGDNALITLSKSHGSSASHTYSVLIGNREWMRRNGLHIANDVNDAMTDHETKGQTAILVAIDGVLCGMIAIADTVKQEAALAVHTLKNMGIDVVLITGDNRKTAKAIATQVGIKKVFAEVLPSHKVAKVQELQNGRKKVAMVGDGVNDSPALARADVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRINLILALIYNLLGIPIAAGVFMPVGLVLQPWMGSAAMAASSVSVVLSSLQLKCYKKPDTESYEAQAQGRMKPLTPSQISVHIGMDDRRRDSSRSAPWDQISQVSLSSLTSDKLPRHNGFVEEEGDKWSLLMNGGDEEQYI"
polyA_site 4774
/gene="ATP7B"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
tgggaatgccagaagtcaatacagttgaaagacagactttgtccaacactgattctcctcctggctgtgagctggagcctacaatgaaacacaattttgcttttgacaacatgggctatgaggagagctttgaaagtgtgccctctccatcttcccaagaacacaccgtggcagtcaatattgtgggaatgacttgccaatcgtgtgtgcagtcgatagaaggccgaatttccaaggtgaagggcattgtgagtattaaagtctcccttgagcagaacaacgctgtaataaagtatctgcagacagaaataaatcctgaacagatttgccaggagattcaggatatgggctttgatgccaacatagcagaagagagattgacaacagcaactgtaaatttgtcacgcttgagagaagcagtagttaagcttcgggtagaaggcatgacgtgccagtcctgtgtcaccaacattgaaggaaagattaggaaactgcatggtgtggcaaaaatcaaggtgtcacttggtaaccaggaagccgttattgcttactatccttacatcattcagcctgacgacctcaagagccatatcagtaacctgggatatgactgcaccattaaaagtaaatcaacccctttgaagctgggtgtcctcgatctcgagcgcttgcagaatgcaaaccccaaggagacaccagcaagtcttgagagtgatcgggtggatccactggtcacagagatgcgtagcacagctacaattgctgtacagatagaaggcatgcactgcaagtcctgtgtcagaaacattgaagaaaatatatcagatcttcctggcatacaaagcattaaagtgtctttggagcataaatgtgctgtggtacagtatagcccaaatctaattaccctgtcagctttgcagcaagctattgaatcccttccacctggaaactttaaagtatgcctccttaatgtttcagaagcaaataaaggagcatctcccttacctgctttgctatatggtctcttcagagagccactgcaagacatgacatgcacggctgttatcaggatcgatggcatgacctgcaattcttgtgtacagtctatagaaggggctatatcacagagacaaggagtgcaacgtatagcagtttctctagctggcagaactgggaccatacattatgatccagttattactaatggagaagagttaagagctgccatagaagagatggggtttgatgcttctgtgctgacagataccgccgctggagaacgtaggcaccagcctgatgccagcaatgctgctgtgcagcctcaacctccagagcctcctcgccaagactgtgcctcaggtgctcttccagacagtcctcaccttgatgggacaaacgagcacagcagagtgacagctgaaaagtgttttttacaaatcacaggcatgacctgtgcatcatgtgtatctaccattgaaagaagtttgcagaaagaagacggaattgtttcagtgttagtagcactgatggcaggtaaagcagagataaaatacaagccagaattcatacagcctcttgaaatagcacagctgatccagaatttgggttttgaagctaccgtcctagaagatcatgcagaaactgaagggaatgtggagcttcttattacagggatgacttgtgcttcttgtgttcacaatattgaatccaaactcatgagaacaaatggcatattctatgcctcagttgcacttgctacttgcaaagctcacatccagtttgatcctgaaattactggacctcgagatattataaaaataattgaggaaattggctttcatgcttccgtggctaaaagagttccaaatgcacataaccttgatcataaaaaggaaatacagcagtggagaaaatctttcttgtgcagcctcctgtttgggatccctgtcttaatcctaatgatttatatgctaatacctgatggtgagcaccatgggtctacggtgctggaaaagaatctcattcctggattatctattttaaatcttctcttctttgtcctgtgcacttttgttcagtttcttggtggatggtatttttatgtacaagcttacaaatcactgaagcacaagacagccaatatggatgtgctcatcgtactggccacgacgattgcttatgtgtattcatgtgtgatcctgatggtagcaataattgaaaaggcagagaaaagccctgtcactttctttgacactcctccaatgctgttcgtgttcattgcccttggaagatggctggaacacatagcaaagagtaagacctcagaagctcttgctaaacttatatctcttcaagccacagaagccactgtagtgactcttggacctgaccactctatcatcagggaggagcaggtagctgttgaactggttcaaaggggtgacattgtaaaggttgttcctggtggaaagttcccggtggatggaaaggtcgttgaaggcagttctatggcagatgagtctctcattactggggaagctatgccagtcactaaaaagcctgggagcacagtgattgctggttctataaatgcacatggctcagttcttgtaaatgcaactcatgttggtaatgataccactctggcacaaattgtgaaattggtggaagaagctcaaatgtcaaaggcacccatccagcaactggcagataagtttagtggatattttgttccatttatcatcatcatttcaacagtgacattgatagtatggatcacaattggttttataaattttgatgttattcaaaaatattttcctaatcagaacaaacacgtttcaaaagctgaactaatactgaggtttgcatttcaaacctcaatcactgtgctgagcattgcatgcccctgttctttaggcttggctacccccacagctgtgatggtgggcacaggagttgctgcgcagaatggtattctcatcaaaggcggaaaacccctggaaatggcacacaagatcaagactgtgatgtttgataaaactgggaccatcacctgtggagttcctaaagtcatgagggtgcttttgctaggagacacggctgtgctctctctgaagaaggtactggtggtggttggcactgcagaagccagcagtgagcatcctttaggagtggcagtcactaaatattgcaaagaggagcttggcactcagagcctgggatactgcaccaatttccaggcagtcccaggctgtggcatcagctgcaaagtcggaggtgtggaggctgtcctggacatggctgaggagggtctcaataatctggatactaacaggagcagggacagcagtgctcctctgggagataatgcattgatcacgctctccaaatcacatggttcatcagcttctcatacatactcagtgctgattggaaatcgtgagtggatgcgacgcaatggcttgcatattgcaaatgatgtaaatgatgcaatgacagaccatgaaacaaaaggacagactgccatattagtggctatagatggtgtgttgtgtggaatgatcgcaatagcagacactgtcaagcaggaggcagcccttgctgtgcacacactgaaaaacatgggaatagatgtggtgctgataacgggcgacaacagaaaaactgcaaaagccattgctactcaggttgggatcaaaaaagtctttgctgaggttcttccttctcacaaggttgcaaaggtccaggagcttcaaaatgggaggaagaaggttgcaatggttggtgatggagtcaatgattcccctgcactagccagggccgacgttggaattgcaattggaactggtaccgatgttgccattgaagcagcagatgttgttcttatccgaaatgacttgctggatgtagttgccagtattcacttatcaaagagaacagttcgaagaatacgaataaatctgattcttgccctaatttataatctgcttggaatacccatagcagcaggtgtgttcatgcctgttggccttgtgcttcagccttggatgggatcagcagcaatggcagcttcttctgtgtctgtcgtgctgtcttccctgcagctgaaatgttataagaagccagacacagaaagttatgaggcacaggctcaaggccgcatgaagccacttactccttcccaaattagtgttcatatcggaatggatgataggaggagggattcatccagatcggctccttgggatcagattagtcaagtgtctctctcttccttgacttcagacaagttgccaagacataatggttttgttgaggaagaaggggacaagtggtctttgctcatgaatggaggggatgaagaacagtacatctgaagcactgtattcttagtacaggaggaaatgttcctctttactagtgacaggaaggaccaacttatttcatcaggagcttcaagactgtaagtgaagtcattccttcagctcacaaaacgattgcaactcagctcaatattgggttgtatggattgtggattttttttcaggtcaccagttatttctagtcatagaaagaatctgtggctctgtaatgaactggctcatttgcacacagcaattagtgaaataatgtaaaattgtaattttcagagtctttttaaagagtttctcttttctgaactgcttgctgggcaccaaattctgtactttcgctcattctaactttattctttcaagaccacatgaagtaaaagattttcagagctgccaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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