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2025-10-28 05:55:08, GGRNA.v2 : RefSeq release 232 (Sep, 2025)

LOCUS       XM_074859739            4774 bp    mRNA    linear   VRT 28-JUN-2025
DEFINITION  PREDICTED: Strix uralensis ATPase copper transporting beta (ATP7B),
            transcript variant X1, mRNA.
ACCESSION   XM_074859739
VERSION     XM_074859739.1
DBLINK      BioProject: PRJNA1279222
KEYWORDS    RefSeq.
SOURCE      Strix uralensis (Ural owl)
  ORGANISM  Strix uralensis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes;
            Strigidae; Strix.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_133973) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_047716275.1-RS_2025_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.4
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/26/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4774
                     /organism="Strix uralensis"
                     /mol_type="mRNA"
                     /isolate="ZFMK-TIS-50842"
                     /db_xref="taxon:36305"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="skin"
                     /geo_loc_name="Germany: Tierpark Hellenthal"
                     /lat_lon="50.50266713 N 6.43019929 E"
                     /collection_date="2020-05-04"
     gene            1..4774
                     /gene="ATP7B"
                     /note="ATPase copper transporting beta; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:141939629"
     CDS             6..4379
                     /gene="ATP7B"
                     /codon_start=1
                     /product="copper-transporting ATPase 2 isoform X1"
                     /protein_id="XP_074715840.1"
                     /db_xref="GeneID:141939629"
                     /translation="
MPEVNTVERQTLSNTDSPPGCELEPTMKHNFAFDNMGYEESFESVPSPSSQEHTVAVNIVGMTCQSCVQSIEGRISKVKGIVSIKVSLEQNNAVIKYLQTEINPEQICQEIQDMGFDANIAEERLTTATVNLSRLREAVVKLRVEGMTCQSCVTNIEGKIRKLHGVAKIKVSLGNQEAVIAYYPYIIQPDDLKSHISNLGYDCTIKSKSTPLKLGVLDLERLQNANPKETPASLESDRVDPLVTEMRSTATIAVQIEGMHCKSCVRNIEENISDLPGIQSIKVSLEHKCAVVQYSPNLITLSALQQAIESLPPGNFKVCLLNVSEANKGASPLPALLYGLFREPLQDMTCTAVIRIDGMTCNSCVQSIEGAISQRQGVQRIAVSLAGRTGTIHYDPVITNGEELRAAIEEMGFDASVLTDTAAGERRHQPDASNAAVQPQPPEPPRQDCASGALPDSPHLDGTNEHSRVTAEKCFLQITGMTCASCVSTIERSLQKEDGIVSVLVALMAGKAEIKYKPEFIQPLEIAQLIQNLGFEATVLEDHAETEGNVELLITGMTCASCVHNIESKLMRTNGIFYASVALATCKAHIQFDPEITGPRDIIKIIEEIGFHASVAKRVPNAHNLDHKKEIQQWRKSFLCSLLFGIPVLILMIYMLIPDGEHHGSTVLEKNLIPGLSILNLLFFVLCTFVQFLGGWYFYVQAYKSLKHKTANMDVLIVLATTIAYVYSCVILMVAIIEKAEKSPVTFFDTPPMLFVFIALGRWLEHIAKSKTSEALAKLISLQATEATVVTLGPDHSIIREEQVAVELVQRGDIVKVVPGGKFPVDGKVVEGSSMADESLITGEAMPVTKKPGSTVIAGSINAHGSVLVNATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADKFSGYFVPFIIIISTVTLIVWITIGFINFDVIQKYFPNQNKHVSKAELILRFAFQTSITVLSIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITCGVPKVMRVLLLGDTAVLSLKKVLVVVGTAEASSEHPLGVAVTKYCKEELGTQSLGYCTNFQAVPGCGISCKVGGVEAVLDMAEEGLNNLDTNRSRDSSAPLGDNALITLSKSHGSSASHTYSVLIGNREWMRRNGLHIANDVNDAMTDHETKGQTAILVAIDGVLCGMIAIADTVKQEAALAVHTLKNMGIDVVLITGDNRKTAKAIATQVGIKKVFAEVLPSHKVAKVQELQNGRKKVAMVGDGVNDSPALARADVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRINLILALIYNLLGIPIAAGVFMPVGLVLQPWMGSAAMAASSVSVVLSSLQLKCYKKPDTESYEAQAQGRMKPLTPSQISVHIGMDDRRRDSSRSAPWDQISQVSLSSLTSDKLPRHNGFVEEEGDKWSLLMNGGDEEQYI"
     polyA_site      4774
                     /gene="ATP7B"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
tgggaatgccagaagtcaatacagttgaaagacagactttgtccaacactgattctcctcctggctgtgagctggagcctacaatgaaacacaattttgcttttgacaacatgggctatgaggagagctttgaaagtgtgccctctccatcttcccaagaacacaccgtggcagtcaatattgtgggaatgacttgccaatcgtgtgtgcagtcgatagaaggccgaatttccaaggtgaagggcattgtgagtattaaagtctcccttgagcagaacaacgctgtaataaagtatctgcagacagaaataaatcctgaacagatttgccaggagattcaggatatgggctttgatgccaacatagcagaagagagattgacaacagcaactgtaaatttgtcacgcttgagagaagcagtagttaagcttcgggtagaaggcatgacgtgccagtcctgtgtcaccaacattgaaggaaagattaggaaactgcatggtgtggcaaaaatcaaggtgtcacttggtaaccaggaagccgttattgcttactatccttacatcattcagcctgacgacctcaagagccatatcagtaacctgggatatgactgcaccattaaaagtaaatcaacccctttgaagctgggtgtcctcgatctcgagcgcttgcagaatgcaaaccccaaggagacaccagcaagtcttgagagtgatcgggtggatccactggtcacagagatgcgtagcacagctacaattgctgtacagatagaaggcatgcactgcaagtcctgtgtcagaaacattgaagaaaatatatcagatcttcctggcatacaaagcattaaagtgtctttggagcataaatgtgctgtggtacagtatagcccaaatctaattaccctgtcagctttgcagcaagctattgaatcccttccacctggaaactttaaagtatgcctccttaatgtttcagaagcaaataaaggagcatctcccttacctgctttgctatatggtctcttcagagagccactgcaagacatgacatgcacggctgttatcaggatcgatggcatgacctgcaattcttgtgtacagtctatagaaggggctatatcacagagacaaggagtgcaacgtatagcagtttctctagctggcagaactgggaccatacattatgatccagttattactaatggagaagagttaagagctgccatagaagagatggggtttgatgcttctgtgctgacagataccgccgctggagaacgtaggcaccagcctgatgccagcaatgctgctgtgcagcctcaacctccagagcctcctcgccaagactgtgcctcaggtgctcttccagacagtcctcaccttgatgggacaaacgagcacagcagagtgacagctgaaaagtgttttttacaaatcacaggcatgacctgtgcatcatgtgtatctaccattgaaagaagtttgcagaaagaagacggaattgtttcagtgttagtagcactgatggcaggtaaagcagagataaaatacaagccagaattcatacagcctcttgaaatagcacagctgatccagaatttgggttttgaagctaccgtcctagaagatcatgcagaaactgaagggaatgtggagcttcttattacagggatgacttgtgcttcttgtgttcacaatattgaatccaaactcatgagaacaaatggcatattctatgcctcagttgcacttgctacttgcaaagctcacatccagtttgatcctgaaattactggacctcgagatattataaaaataattgaggaaattggctttcatgcttccgtggctaaaagagttccaaatgcacataaccttgatcataaaaaggaaatacagcagtggagaaaatctttcttgtgcagcctcctgtttgggatccctgtcttaatcctaatgatttatatgctaatacctgatggtgagcaccatgggtctacggtgctggaaaagaatctcattcctggattatctattttaaatcttctcttctttgtcctgtgcacttttgttcagtttcttggtggatggtatttttatgtacaagcttacaaatcactgaagcacaagacagccaatatggatgtgctcatcgtactggccacgacgattgcttatgtgtattcatgtgtgatcctgatggtagcaataattgaaaaggcagagaaaagccctgtcactttctttgacactcctccaatgctgttcgtgttcattgcccttggaagatggctggaacacatagcaaagagtaagacctcagaagctcttgctaaacttatatctcttcaagccacagaagccactgtagtgactcttggacctgaccactctatcatcagggaggagcaggtagctgttgaactggttcaaaggggtgacattgtaaaggttgttcctggtggaaagttcccggtggatggaaaggtcgttgaaggcagttctatggcagatgagtctctcattactggggaagctatgccagtcactaaaaagcctgggagcacagtgattgctggttctataaatgcacatggctcagttcttgtaaatgcaactcatgttggtaatgataccactctggcacaaattgtgaaattggtggaagaagctcaaatgtcaaaggcacccatccagcaactggcagataagtttagtggatattttgttccatttatcatcatcatttcaacagtgacattgatagtatggatcacaattggttttataaattttgatgttattcaaaaatattttcctaatcagaacaaacacgtttcaaaagctgaactaatactgaggtttgcatttcaaacctcaatcactgtgctgagcattgcatgcccctgttctttaggcttggctacccccacagctgtgatggtgggcacaggagttgctgcgcagaatggtattctcatcaaaggcggaaaacccctggaaatggcacacaagatcaagactgtgatgtttgataaaactgggaccatcacctgtggagttcctaaagtcatgagggtgcttttgctaggagacacggctgtgctctctctgaagaaggtactggtggtggttggcactgcagaagccagcagtgagcatcctttaggagtggcagtcactaaatattgcaaagaggagcttggcactcagagcctgggatactgcaccaatttccaggcagtcccaggctgtggcatcagctgcaaagtcggaggtgtggaggctgtcctggacatggctgaggagggtctcaataatctggatactaacaggagcagggacagcagtgctcctctgggagataatgcattgatcacgctctccaaatcacatggttcatcagcttctcatacatactcagtgctgattggaaatcgtgagtggatgcgacgcaatggcttgcatattgcaaatgatgtaaatgatgcaatgacagaccatgaaacaaaaggacagactgccatattagtggctatagatggtgtgttgtgtggaatgatcgcaatagcagacactgtcaagcaggaggcagcccttgctgtgcacacactgaaaaacatgggaatagatgtggtgctgataacgggcgacaacagaaaaactgcaaaagccattgctactcaggttgggatcaaaaaagtctttgctgaggttcttccttctcacaaggttgcaaaggtccaggagcttcaaaatgggaggaagaaggttgcaatggttggtgatggagtcaatgattcccctgcactagccagggccgacgttggaattgcaattggaactggtaccgatgttgccattgaagcagcagatgttgttcttatccgaaatgacttgctggatgtagttgccagtattcacttatcaaagagaacagttcgaagaatacgaataaatctgattcttgccctaatttataatctgcttggaatacccatagcagcaggtgtgttcatgcctgttggccttgtgcttcagccttggatgggatcagcagcaatggcagcttcttctgtgtctgtcgtgctgtcttccctgcagctgaaatgttataagaagccagacacagaaagttatgaggcacaggctcaaggccgcatgaagccacttactccttcccaaattagtgttcatatcggaatggatgataggaggagggattcatccagatcggctccttgggatcagattagtcaagtgtctctctcttccttgacttcagacaagttgccaagacataatggttttgttgaggaagaaggggacaagtggtctttgctcatgaatggaggggatgaagaacagtacatctgaagcactgtattcttagtacaggaggaaatgttcctctttactagtgacaggaaggaccaacttatttcatcaggagcttcaagactgtaagtgaagtcattccttcagctcacaaaacgattgcaactcagctcaatattgggttgtatggattgtggattttttttcaggtcaccagttatttctagtcatagaaagaatctgtggctctgtaatgaactggctcatttgcacacagcaattagtgaaataatgtaaaattgtaattttcagagtctttttaaagagtttctcttttctgaactgcttgctgggcaccaaattctgtactttcgctcattctaactttattctttcaagaccacatgaagtaaaagattttcagagctgccaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]