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2025-09-14 17:53:29, GGRNA.v2 : RefSeq release 231 (Jul, 2025)

LOCUS       XM_072929438            4463 bp    mRNA    linear   VRT 07-APR-2025
DEFINITION  PREDICTED: Taeniopygia guttata ATPase copper transporting beta
            (ATP7B), transcript variant X6, mRNA.
ACCESSION   XM_072929438
VERSION     XM_072929438.1
DBLINK      BioProject: PRJNA1244912
KEYWORDS    RefSeq.
SOURCE      Taeniopygia guttata (zebra finch)
  ORGANISM  Taeniopygia guttata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_133024) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_048771995.1-RS_2025_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/02/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4463
                     /organism="Taeniopygia guttata"
                     /mol_type="mRNA"
                     /db_xref="taxon:59729"
                     /chromosome="1"
     gene            1..4463
                     /gene="ATP7B"
                     /note="ATPase copper transporting beta; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins"
                     /db_xref="GeneID:100219575"
     CDS             320..4321
                     /gene="ATP7B"
                     /codon_start=1
                     /product="copper-transporting ATPase 2 isoform X3"
                     /protein_id="XP_072785539.1"
                     /db_xref="GeneID:100219575"
                     /translation="
MERKLDNKMKRELSCLATLNDRNISLVSIRKQQAACDVPELLIIGEKSKMASPVKASSNLQKEEKVLRSYSTGMTEVNTDERQALSNVDSPPGCDLKPTMKHKFAFDNMGYEESSENMSSPPSQEHTVVVNIVGMTCQSCVQSIEGRICKVKGILRIKVSLEQNNAVIKYLQLEISPEQICQEILDMGFDANIAEEKLTTATVNLPSLKEAVAKLRVEGMTCQSCVTNIEGKIRKLHGVAKIKVSLDNQEAIIAYHPYIIQPDDLKRHISDLGYDCTIKSKSAPLKLGALDLQRLQNANPRETSASLESDGLDLLVPEMGSTATVTAQIEGMHCKSCVRNIEGNISDLPGIKCIKVSLENKCAVVQYSPDLITLSALQQAIESLPPGNFKVSLLSGSEANKAASRSGAFTYNVIRQPPQGTTHTAVIKIDGMTCNSCVKSIEGAISQRQGVQHVAVSLAGSTGTIHYDPAVTSGEELRAAIEDMGFDASVLTDTATGEKRCQPDTSKAAVQPQAPEPPRQGNASDALPDSPHPEGSNQLSGAREEKCVLQITGMTCASCVSTIERNLQKEDGIVSVLVALMAGKAEIKYKPELIQPLEIAQLIQNLGFEATIMENNAETEGQVELLITGMTCASCVHNIESKLMRTNGIFSASVALATSKAHIQFDPEIIGPRDIIKVIKEIGFHASVAKRAPNAHNLSHKKEIQQWRKSFLFSLVFGIPVVVLMIYMQIPSGEDHGSKVLEQNLIPGLSILNLLFFILCTFVQFLGGWYFYVQAYKSLRHKTANMDVLIVLATTIAYLYSCIILIVAIIEKAEKSPVTFFDTPPMLFVFIALGRWLEHIAKGKTSEALAKLMSLQATEATVVTLGPGHSIVREEQVPVELVQRGDIIKVVPGGKFPVDGKVIEGNSMADESLITGEPMPVIKKPGSTVIAGSINAHGSLLVNATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADKFSGYFVPFIIIISTVTLIVWITIGFVNFDIIKKYFPNQSKNISKAEIILRFAFQTSITVLSIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHQIKTVMFDKTGTITYGVPKVMRVLLMGDTAVLPLKKVLAVVGTAEASSEHPLGMAVTKYCKEELGTERLGYCTDFQAVPGCGISCKVGGVEAILGIAEEGPNELDANRSGVSSAPLGDNRVITLLESQGPSASQKYSVLIGNREWMRRNGLNIANDVNDAMTNHEMKGQTAILVAIDGVLCGMIAIADTVKQEAALAVHTLQSMGIDVVLITGDNRKTAKAIATQVCSCLLASCFSLGWDQLQWQLLLCLSCCLHCS"
ORIGIN      
ttggctgagcctgcagcaacgccgtgtgcagagatcagcagtgccggacgcagttgggaaagcacgaggatgccaattggtgggaaacatttaaactggcagggagagcaggtagctgagtgcagcaagcagcctacgtaaggatcacaggttgcatctgggatttcctgatgaatgcctaatgagcccatggattagacaggcagaactcttcaagctgctgtaaatgtagttgaaagaagcgtggcttgtaggacaccaaataactgctctcgtgaaaccttttttggcattgcagtatttaaagaccagaaaaataatggagagaaaactggacaataaaatgaaaagggaactgtcctgcttagctactttaaacgacagaaacatatccttggtgtctattcgtaagcagcaggcagcttgtgatgtgcctgaactactgattattggtgaaaagtccaagatggcatctccggtaaaagcaagcagtaacttgcagaaagaagagaaagttttgcggagttactctacgggaatgacagaagtcaatacagatgaaaggcaggctttgtccaacgtcgattctcctcctggttgtgacctgaagcctacaatgaaacataaatttgcttttgacaacatgggctatgaggagagctctgaaaacatgtcctctccaccttcccaagagcatactgtggtagtcaacattgtgggaatgacttgccaatcatgtgtgcagtcaatagaaggccgaatttgcaaggtgaagggcattttgagaattaaagtctcccttgaacagaacaatgctgttatcaagtatctgcagttggaaataagccccgaacagatttgccaggaaattctggatatgggctttgatgccaatatagcagaagagaagttgacaacagcaactgtaaatttgccaagcttgaaagaagcagtagctaagcttcgggtagaaggcatgacatgccagtcctgtgtcaccaacattgaaggaaagataaggaaactgcatggtgtagcaaaaatcaaggtgtcacttgataaccaagaagcaattattgcttaccatccttacatcattcagcctgatgacctcaagagacacatcagtgacctggggtatgactgcaccattaaaagtaaatcggcccctttgaagctgggtgcccttgatctccagcgcttgcagaatgcaaaccctagggagacatctgcaagccttgagagtgatgggctggatctgctggtccctgagatgggtagcacagcaacagtgactgcacagatagagggcatgcactgcaagtcctgtgtcagaaatatcgaaggaaatatatcagatcttcctggcataaaatgtattaaagtgtctttggagaataaatgtgctgtggtacagtatagcccagatttaatcaccctgtcagctctgcagcaagcaattgaatcccttccacctggaaactttaaagtaagcctccttagtggttcagaagcaaataaagcagcatctcgctcgggtgctttcacgtacaatgtcatcagacagccaccacaaggcacgacacatacggctgttattaagattgatggcatgacctgcaattcttgtgtgaagtccatagaaggggccatatcacagaggcagggagtgcagcacgtggcagtttctcttgctggcagtactgggaccatacactatgatccagctgtcactagtggagaagagttaagagctgccatagaagacatgggatttgatgcctctgtgctgacagatactgccactggagaaaagaggtgccagcctgataccagcaaagctgctgtacagcctcaagctccagagcctcctcgccaaggcaatgcctcggatgctcttccagacagtcctcaccctgaggggtcaaaccagctcagtggagccagagaagaaaagtgtgttttacagatcacaggcatgacttgtgcatcgtgtgtgtctaccattgaaagaaatttgcagaaagaagatggaattgtttcagtattggtagcactgatggcaggtaaagcagagataaaatacaagccagaactcatacaacctcttgaaatagcacagctgatccagaatttgggttttgaagctaccattatggaaaataatgcagaaacagaagggcaagtggagcttcttattacagggatgacttgtgcttcttgtgttcacaatattgaatccaaactcatgagaacaaatggcatattctctgcctcagttgcacttgcaactagcaaagctcacatccagtttgatcctgaaattattggtccacgagatattataaaagtaatcaaggaaattggctttcatgcttctgtggctaaaagagctccaaatgcacataatctgagtcataaaaaggaaatacagcagtggaggaaatctttcttattcagcctagtgtttggtatcccagttgtagtcctaatgatttatatgcaaatacccagtggtgaagaccatgggtctaaggtgctggaacagaacctcattcctggattatctattttgaatcttcttttctttatcctgtgcacttttgttcagttccttggtggatggtatttttacgtacaagcttacaagtcactgaggcacaagacagccaatatggacgtgctcatcgtgctggccacgacgattgcttatctgtattcctgcatcatcctgatagtagcaatcattgaaaaggcagagaaaagccctgtcactttcttcgacacgcctccgatgttgtttgtgttcattgcactcggcagatggctggaacacatagccaagggtaagacctctgaagctcttgctaagcttatgtctcttcaagccacagaagccactgtggtgactctcggacctggccactctattgtcagggaggagcaagtacctgttgaactggttcaaaggggtgatattataaaagttgttcctggtggaaagttcccagtggatggaaaggtcattgaaggcaattctatggcagatgagtctctcattactggggaacctatgccagtcattaaaaagcctgggagcacagtgattgctggttctataaatgcacatggctcacttcttgttaatgcaacgcatgttggtaatgataccactctggcacagattgtgaaattggtggaagaagctcaaatgtcaaaggcacccatccagcaactggcagataaatttagtggatactttgttccatttatcatcatcatttcaactgtgacattgatagtatggatcacaattggttttgtaaattttgatattattaaaaaatattttcctaatcagagcaaaaacatttcaaaagctgaaataatactgaggtttgcatttcaaacctcaatcactgtgctgagcattgcatgcccttgctctttaggcctggctacccccacagctgtaatggtgggcacaggagtggctgcgcagaatggtattctcatcaaaggtggaaaacccctggaaatggcacatcagatcaagactgtgatgtttgataaaactgggaccatcacctatggcgttcctaaagtcatgagagtgcttttgatgggagacacagctgtgctccccctgaagaaggtactggcggttgttggtacagcagaagccagcagtgagcatcctttaggaatggctgtcactaaatactgcaaagaggagcttggcactgagaggctgggatactgcactgacttccaggcagtcccaggctgtggtatcagctgcaaggtcggaggagttgaggccatccttggcatagctgaggaaggtcccaatgagctggatgctaacaggagtggggtcagcagtgctcctctgggagataacagagttatcacgctcttggaatcacaaggtccatcagcttctcagaaatattcggtgttgatcggaaatcgtgagtggatgcgacgcaatggcttgaatattgcaaatgatgtaaatgatgcaatgacaaaccatgaaatgaaaggacagactgccatactagtggctatagatggtgtgttgtgtggaatgatcgcaatagcagacacagtcaagcaggaggcagcccttgctgtgcacacactgcagagcatgggaatagatgtggtgctcataacaggggacaataggaaaactgcaaaagccattgctactcaggtgtgttcatgcctgttggcctcgtgcttcagccttggatgggatcagctgcaatggcagcttcttctgtgtctgtcctgctgtcttcactgcagctgaaatgttacaagaagccagacacagaaagttacgaagcacaagcccaaggccgcatgaagccactcactccttctcaaatcagtgttcacattggaatggatgataggaggagggattcttccaaaccatctccttgggatca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]