LOCUS       XM_071917393            5789 bp    mRNA    linear   VRT 07-MAR-2025
DEFINITION  PREDICTED: Centroberyx gerrardi dicer 1, ribonuclease type III
            (dicer1), mRNA.
ACCESSION   XM_071917393
VERSION     XM_071917393.1
DBLINK      BioProject: PRJNA1232093
KEYWORDS    RefSeq.
SOURCE      Centroberyx gerrardi (bight redfish)
  ORGANISM  Centroberyx gerrardi
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Berycimorphaceae; Beryciformes; Berycidae;
            Centroberyx.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_027303791) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_026898505.1-RS_2025_03
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 03/06/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5789
                     /organism="Centroberyx gerrardi"
                     /mol_type="mRNA"
                     /db_xref="taxon:166262"
                     /chromosome="Unknown"
     gene            1..5789
                     /gene="dicer1"
                     /note="dicer 1, ribonuclease type III; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 31 Proteins"
                     /db_xref="GeneID:139925887"
     CDS             1..5727
                     /gene="dicer1"
                     /codon_start=1
                     /product="endoribonuclease Dicer"
                     /protein_id="XP_071773494.1"
                     /db_xref="GeneID:139925887"
                     /translation="

MAGLQLVTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGKTFIAVLLTKELSHQIRGDFQENAKRTVFLVNTASSVVQQAAAVRTHSDLQVGEYTSLEETSAWTDQQWSREMIENQVLVMTCHIFLHVLRNGVLPLSKINLVVFDECHLAITDHPYREIMKLFEGCPCGPRILGLTASILNGKCDPSELEQKIQNLEQILRSNAETATDLVVLDRYASQPREVVLDCGPYLDKSGLSSRLQAELDEALHFLNDCNISVAREDRDPTFISKQVLSDCRAVLLVLGPWCADKVAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKVHALCEEHFSPASLDLKFVTPKVLRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKEKPEANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDQELAYISSNFITGHSIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIMLADSERTKAFEEDLTTYKAIEKILRNKCSKSAEVSEFEVEQVLDDDNILPPYVLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTAETQDGRYQSTLYLPINSPLRVPVKGPIMSCARLAEKAVALVCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYAVPEQSYYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFVLTAAQLDLITRLHQYIFSHILRLEKPALEFKPTLADSAYCVLPLNVVGDSNTLDLDFKFMEDIEKSEARTGIPTTQYTKQNPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTAGDAGVGAQTLPPDFRYPNLDFGWKRSIDSKTFISCPESCTEDGEGHCKHQATVSPEPDALTPPRSHHSSPSEQGPHAALRPGDAACTRNLTNGTALVADCDDNGHQEEHLHQRDNCQRSRPGSPRPESPESIQTTTSVPVQPSPSIKKPNSSPPQPSHECTPGRTSDHVNKATSVCSLAAMGPDAPTAPSPDPAGDRQPGAEAGDSPKSLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSSTDKWDSDEAKEELLANGRSGEDYEEDEEEEGEDGDDDGELMLKDEPKDEVNMEDDLEYYQEHIKFIDNMLMGSGAFCKKISLGTFPPSPTPVSGSSPAPESPYEWKAPKKPAHHPAAHYTPEAPPGGPSAEEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGAELGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPVERRTLTDLTVVSPQATTLDLRYGWLKIPPRCMLDHPDAARTLNHLISGFENFERKINYTFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSRMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQNN"

     misc_feature    94..687
                     /gene="dicer1"
                     /note="DEXH-box helicase domain of endoribonuclease Dicer;
                     Region: DEXHc_dicer; cd18034"
                     /db_xref="CDD:350792"
     misc_feature    order(94..105,112..114,163..186,307..309,496..498,
                     589..591)
                     /gene="dicer1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350792"
     misc_feature    order(271..276,343..348,421..423,427..432,439..441,
                     514..522)
                     /gene="dicer1"
                     /note="nucleic acid binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:350792"
     misc_feature    781..1065
                     /gene="dicer1"
                     /note="Partner-binding domain of the endoribonuclease
                     Dicer; Region: Dicer_PBD; cd15903"
                     /db_xref="CDD:277191"
     misc_feature    order(796..801,808..810,814..819,994..999,1006..1011,
                     1018..1020,1027..1032,1039..1041)
                     /gene="dicer1"
                     /note="Trbp binding interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:277191"
     misc_feature    1279..1662
                     /gene="dicer1"
                     /note="C-terminal helicase domain of the endoribonuclease
                     Dicer; Region: SF2_C_dicer; cd18802"
                     /db_xref="CDD:350189"
     misc_feature    order(1315..1323,1531..1533,1588..1590,1594..1596)
                     /gene="dicer1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:350189"
     misc_feature    order(1543..1545,1549..1551,1624..1626,1630..1632)
                     /gene="dicer1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350189"
     misc_feature    1858..2124
                     /gene="dicer1"
                     /note="Dicer dimerization domain; Region: Dicer_dimer;
                     pfam03368"
                     /db_xref="CDD:460900"
     misc_feature    2626..2994
                     /gene="dicer1"
                     /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse
                     involved in cleaving dsRNA in the RNA interference
                     pathway. It generates dsRNAs which are approximately 20 bp
                     long (siRNAs), which in turn target hydrolysis of
                     homologous RNAs. PAZ domains are named...; Region:
                     PAZ_dicer_like; cd02843"
                     /db_xref="CDD:239209"
     misc_feature    order(2815..2817,2854..2856,2872..2874,2884..2886,
                     2938..2940,2962..2964,2968..2970)
                     /gene="dicer1"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239209"
     misc_feature    3349..>3831
                     /gene="dicer1"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    3841..>4116
                     /gene="dicer1"
                     /note="Ribonuclease III family; Region: RIBOc; smart00535"
                     /db_xref="CDD:197778"
     misc_feature    order(3892..3897,3904..3909,3916..3918,3925..3930,
                     3937..3942,3946..3954,3982..3984)
                     /gene="dicer1"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238333"
     misc_feature    5002..5496
                     /gene="dicer1"
                     /note="Ribonuclease III C terminal domain. This group
                     consists of eukaryotic, bacterial and archeal ribonuclease
                     III (RNAse III) proteins. RNAse III is a double stranded
                     RNA-specific endonuclease. Prokaryotic RNAse III is
                     important in post-transcriptional...; Region: RIBOc;
                     cd00593"
                     /db_xref="CDD:238333"
     misc_feature    order(5062..5067,5074..5079,5086..5088,5095..5100,
                     5107..5112,5116..5124,5152..5154,5416..5418,5449..5451)
                     /gene="dicer1"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238333"
     misc_feature    order(5062..5064,5071..5073,5083..5085,5386..5388,
                     5395..5397)
                     /gene="dicer1"
                     /note="active site"
                     /db_xref="CDD:238333"
     misc_feature    order(5071..5073,5386..5388,5395..5397)
                     /gene="dicer1"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:238333"
     misc_feature    5509..5697
                     /gene="dicer1"
                     /note="double-stranded RNA binding motif of
                     endoribonuclease Dicer and similar proteins; Region:
                     DSRM_DICER; cd10843"
                     /db_xref="CDD:380680"
     misc_feature    order(5509..5514,5518..5523,5530..5535,5542..5547,
                     5557..5559,5572..5580,5584..5586,5590..5592,5641..5652,
                     5659..5661)
                     /gene="dicer1"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:380680"
ORIGIN      

atggcaggcctacagcttgtcacccccgcctcttcacccatggggcctttctttggtctgccatggcagcaggaggccatccacgataacatctacacacctaggaaatatcaggtagaacttcttgaagcagctcttgaacacaatactattgtctgcttgaatactggctcagggaagacctttattgcagtactcctaacaaaagagctctcccaccaaatccgtggagacttccaagaaaatgcgaagaggactgtttttctggtcaatacagcttcgtctgtggttcagcaagcagctgcagtcaggactcactctgacctccaggtgggagagtacaccagcttagaggagacctcagcatggacggaccaacagtggagtcgagagatgatcgagaatcaggtgctggtcatgacttgccacatattcctgcatgttctgaggaatggagtcttgccgttgtctaaaatcaacctggtggtgtttgatgagtgtcatctggccatcacagaccacccctaccgggagataatgaagctgtttgagggttgtccgtgcggtcctcggattctgggtctcactgcctccattctaaatggaaagtgtgacccgtcagaactggagcagaagatccagaacctggagcaaatcctgaggagcaacgccgagactgccactgaccttgtggtcctcgacagatatgcctctcagcccagagaagtggtgctagactgtggcccctacctggacaagagtggcctctcctcccgtctgcaggctgagctggacgaagctctccacttcttgaatgactgcaacatatctgtggccagagaagaccgcgatcccaccttcatatccaaacaggtcctgagtgactgccgggcagtgctgctggtgctggggccctggtgtgccgacaaggtggcgggcatcatggtgcgcgagctccagaagtacatcaagcacgagcaggaggagctcaaccgcaagttcctgctcttcaccgacaccatcctgcgcaaggtgcacgccctctgcgaggagcacttctcgcccgcctcactggacctcaagttcgtcacacccaaggtcctccggctgctggagatcctgcacgagtacaagcccttcgagcggcagcagtttgagagcgtggagtggtacaacaaccgcaaccaggacaactacgtgtcctggagcgactccgaggacgaagacgaggacgaggaggtggaggccaaagagaagccggaagccaactttccctcgccgttcactaacattctctgcgggatcatctttgtggagaggcgttacacggctgtcgtcctcaatcgtctaatcaaagaggcagggaagcaggaccaagagctagcttacatcagcagcaacttcattacaggccacagcattggcaagaaccagccgcgaaacaagcagatggaggtggagttcaggaaacaagaagaggttctccgcaaattccgggctcatgaaaccaacctgctcatcgccaccagtattgtggaggaaggcgtggatattccaaagtgtaacctagtggtgcgcttcgacctgcccacagaatacaggtcctatgtccagtccaaaggcagagcccgggcacctgtctccaactacatcatgttggctgacagcgagaggaccaaagcctttgaggaggatctcacgacttacaaggccatagagaagatcctaaggaataagtgctccaagtcagcagaggtgagcgagtttgaggtggaacaggtgctggacgacgacaacatcctcccaccctatgtgcttagatctgaggacggaggaccccgggtcaccatcaacacagccattggacacattaacaggtactgtgctcggctgcccagtgacccattcacccacttggcacccaagtgtaagactgcggagacacaagacggacgctaccagtccacactctacctgcctatcaactccccacttcgagttcctgttaagggtcctataatgagttgtgccaggctggcagagaaagcagttgcactagtatgttgtgagaaacttcacaaaataggtgagctggatgaccacctgatgccggtggggaaggagacggtgaagtatgaggaggagctggaccttcatgatgaggaggagaccagcgtccctggccggcccggctccaccaagaggaggcagtgctatcctaaagccataccagagtgtctacgggacagttacgctgtaccggagcagtcctactacctatacgtgattgggatggtcctcaccacacctctccctgatgaactcaacttccgcaggaggaagctctacccgccagaggacaccaccaggtgcttcggcatcctgactgccaaaccgatacctcgaatcccccacttcccggtgtacactcgctcaggtgaggtgaccatctccattgagctgcagaagtcgggcttcgtgctcaccgccgcccagctagacctcatcactcgcctgcaccagtacatcttctcccatatcctccgcctggagaaacctgcactggagttcaagcccacgctggccgactcagcttactgcgttctacctctgaatgttgttggggattccaacacactagatttggactttaagttcatggaggacattgagaagtctgaggcccgcactggcattcctaccactcagtacaccaagcagaaccccttcaccttcaagctggaggactaccaggatgctgtcatcattccaaggtatcgtaacttcgaccagcctcatcgattctacgtggccgacgtctacacagacctcacgccgctcagcaagttcccctcgccagaatacgagacatttgctgaatactacaaaaccaagtacaacctggacttgtccaacctgaaccagccgctcctggacgtagaccacacctcctctagactgaacctgttaacgcctcggcacctgaaccagaagggcaaagccctgccactcagcagtgcagagaagaggaaggccaagtgggagagtctgcagaacaaacagatcctggttccagagctgtgtgccatccaccccatccctgcctccctgtggaggaaagctgtgtgtctacccagcatcctctaccgcctccactgcctcctgaccgctgaggagctgagagcccagacggccggcgacgccggagtgggagcccagaccctcccccccgacttcaggtatccaaacctggactttgggtggaagaggtccattgacagcaaaactttcatctcctgtcccgagtcgtgcaccgaggatggcgagggtcactgtaaacaccaagcgactgtatcccccgaacccgatgccctcacgccaccccgcagccaccactcctccccgtctgaacaggggccccacgcggcccttcggcccggagacgccgcctgcaccaggaacctaactaacggcactgccctagtcgccgactgcgacgacaacggccaccaagaagagcaccttcaccaacgcgacaattgccaacgctcccggcccggctcacctcggccggagagccccgaatcaatacaaaccactacctcagttcctgtgcagccctctcccagcatcaagaagcccaactcaagccctccccagcctagtcatgaatgtacaccagggaggacctcagaccacgtgaataaagctacctcagtctgcagcctggcagccatgggtcccgacgctcccacagcaccttcccctgacccggcgggcgatcgacagcccggcgccgaggcgggggactcccccaagagcctggggcccaacccgggcctcattctgcaggccttgaccctatccaatgccagcgatggcttcaacctggagcggctggagatgctgggtgactccttccttaagcatgccatcaccacatacctgttctgcacctaccctgacgcccatgaaggccggctctcctacatgcgcagcaagaaggtgagcaactgtaacctgtaccgcctggggaagaagaaggggctccccagcaggatggtggtgtccatcttcgacccgccggtcaactggctgccccccggctacgtggtcaaccaggacaagagcagcacagacaaatgggattcagatgaggccaaagaggagctcttagccaatgggcgatcgggagaggactatgaggaggatgaggaggaggaaggcgaggatggggatgacgacggggagctgatgctgaaggacgagccgaaagatgaggtcaacatggaggacgacctagagtactaccaggagcacatcaagttcatcgacaacatgctgatgggctctggcgccttctgcaagaagatatccctcggcaccttccccccctcccctaccccggtctccggctcctcccccgccccggagtcgccttatgaatggaaggcccccaagaagcccgcccaccaccccgcggcccactacaccccggaggcgccacccggcgggccctcggccgaggagttcgactacagctcgtgggacgccatgtgctacctggaccccagcaaggccggcgaggaggacgacttcgtggtgggcttctggaacccgtcggaggagaactgcggcgccgagctcggcaagcagtccatctcctacgacctgcacaccgagcagtgcatcgccgacaagagcatcgccgactgtgtggaggccctgctgggctgctacctgaccagctgtggagagagagctgcccagatgttcctctgctctctgggcctcaaggtgttaccggtggagagaaggaccctgacggacctgacagtggtgagtccacaggccacgaccctcgacctccgctacggctggctgaagatcccgccccgctgcatgctggaccatccagacgcagcgcgaactctcaaccacctcatctccggcttcgagaactttgagaggaagatcaactacactttccagaacaaggcttacctcctgcaggccttcactcacgcttcctaccattacaataccattacagattgttaccagcggctggagttccttggtgatgcaattctagactacctcataacgaagcacctttatgaagacccgcggcagcactctcccggcgtgctgaccgacctgcgctcggcactcgtcaacaacaccatcttcgcctctctggccgtcaagtacgactaccacaagtacttcaaggccatctcgcccgagcttttccacgtcatcgatgactttgtgcagttccagctggagaagaacgagatgcaaggcatggactccgagctgcggcgctccgaagaagacgaggagaaggaggaggacatcgaggtccccaaggccatgggggatatcttcgagtcgctcgccggagcaatttacatggacagcaggatgtcattggagacggtgtggcaagtgtattatccaatgatgaggccacttatagagaaattctctgcgaatgtgccccgctctcctgtgagggagctgctagagatggaaccagaaactgccaagttcagccccgcagagagaacgtacgacggcaaggtccgggtgacggtggaggtcgtcggcaagggcaagttcaaaggagtcggccgcagctaccggatcgccaagtcggcggcggcgcgacgggctctgcgcagcctcaaagccaatcaacctcaggtccaaaacaactgagcttctcccgctagctccccaacgttagcacctaagctattgacgctaacgggaaaaaaaac

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