LOCUS       XM_071457431            2141 bp    mRNA    linear   VRT 15-FEB-2025
DEFINITION  PREDICTED: Trachinotus anak vimentin-related 2 (vimr2), transcript
            variant X1, mRNA.
ACCESSION   XM_071457431
VERSION     XM_071457431.1
DBLINK      BioProject: PRJNA1223932
KEYWORDS    RefSeq.
SOURCE      Trachinotus anak (oyster pompano)
  ORGANISM  Trachinotus anak
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Carangaria; Carangiformes; Carangidae;
            Trachinotus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_027273872) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_046630095.1-RS_2025_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/14/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Trachinotus anak"
                     /mol_type="mRNA"
                     /isolate="AG129_WGS33_773"
                     /db_xref="taxon:443729"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="heart"
                     /ecotype="Australia"
                     /geo_loc_name="Australia: Bribie Island Research Centre,
                     Queensland"
                     /collection_date="2024"
     gene            1..2141
                     /gene="vimr2"
                     /note="vimentin-related 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3 long
                     SRA reads, 3 Proteins"
                     /db_xref="GeneID:139605713"
     CDS             78..1250
                     /gene="vimr2"
                     /codon_start=1
                     /product="alpha-internexin isoform X1"
                     /protein_id="XP_071313532.1"
                     /db_xref="GeneID:139605713"
                     /translation="

MAMLRVSSYRKLFEDDNWSRNGGLGMQCAGQYQTSVRVAAVDDCDCDKLDFVAARSLNKEGLKRFAQDRTIIAALNDRLVRLIELAHCFEKENESLECQIVELEEKLNSQQASSSITSTVAHPDYSLDAVVERLRKERDEILCDTEELQKELEFLKKGCEKAAQQRIFFQQERQDVAEEVDAVTAECLALREQVAIYEEQLANMEAQHKTAVERLLEPGEATTGAVAAIRFSSPDITPALDVKEYYCQLAASLQYKCGAASSAVVLGDDGKQLEVGEAVGAAVKDLPKTKNISEMKMLISGLEKELAELEKCNEELEDEIEMKTAAYMDEIAELECTIDEMRHQEADLQAQMKEQCEDYKELLSEKMARDLEIVAYRSLVEEEEQRLCNL"

     misc_feature    276..1235
                     /gene="vimr2"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
     polyA_site      2141
                     /gene="vimr2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ttataaaactcccaccgtggtcctgctgtctctgtttgcctgttgtgttgtagcccagtttgaagccgtccgaagtcatggccatgctcagggtgtcttcttaccgcaagctgtttgaggatgataactggagtcgaaatggagggttaggtatgcagtgtgccgggcagtaccagacctccgtcagggttgcagccgttgacgactgtgactgtgacaagttagacttcgtggctgccaggtctctcaacaaggagggtctgaagcggtttgcccaggaccgcaccatcatcgctgcccttaatgaccgcctggtcaggcttattgaactggcccattgttttgagaaagagaatgagtctcttgaatgtcagattgtggagctagaggagaagctgaacagtcaacaagcctcctccagcatcacctccactgtggctcaccccgactacagcctggatgcagtggtggaaagactgcgcaaggagagggacgagattctgtgtgacactgaggagctgcagaaggagctcgaatttctgaagaaaggctgcgagaaggctgcacagcagaggatcttcttccagcaggaacgacaagatgttgctgaggaagtggatgctgtgacagcagagtgtttggcgctgagggagcaagtggctatctacgaggagcagctggccaacatggaggcccagcacaagacggcagtggagcgtctgctggagccaggtgaagcgacgacaggggcggtggcagcgataagatttagcagccctgacatcactccggccttggatgtaaaggagtactactgccagctggccgcgagcctccagtacaagtgtggtgcagcctcttctgcagtggttcttggggatgatggaaaacaactggaagtgggagaagctgtaggggcagcggtcaaagatttgccaaagacaaagaacatcagtgagatgaagatgctgatttcagggctggaaaaggagcttgcagagcttgagaagtgtaatgaggagctggaggacgagattgagatgaagacggctgcgtacatggacgagattgctgagctggagtgtactatagatgaaatgcggcaccaggaggccgacctccaagcgcagatgaaggagcagtgtgaggactacaaggagctgctcagtgagaagatggccagagacttggagatcgtcgcttacaggagtctggtggaggaagaggagcagaggctgtgcaacctgtgaaatgaggctgaagagtcagactggccggctggggtttggttggatgctcccctcccacatgtggatgagaaaacagacaaaagaaaatcacaaaaaccagacacaaatcagcactagggtgaagcttaaggtaccaacgcagcagatgtaaacttatcatgacagattaatgccgtctggaggcctgagccgggccattgataacaggtcgctggcagacgaccccgagactccaagaaagatggagctgtctaaaactgggagggaggtgggaggatgagggctctgcgatgagtgtgtatccattcagtgtctggcagtgatatttccttaagtgggttttatctttaccagctcactgatatgattcataaatgttgtcccctctttgtcaaacacacaaacacacacacaagctaaactgtgcggctccgtcaagtcattctccctctgataccacctcgtccatcacccaaactttgtctgattaccggctcttaacctttgaccccgtcactgttagcgaacatattgacagctccctcttctcactgactaaacgtgtctcactgtccttctgcttttacagtcatgcattcctgttggttttacatacaagtgtgtttgcttttcaaatggttcatgaagttgtttttctgcagctcttacaaattcagcacctggatctttctgcaagaaaagcttgagtgattcattattctgtctttgaaaagcaatgtcccaatttgctgttatttgagaaataagcttttggtaatcttttccttattttctacgatctgtctgtgataaatcatttctgcttcctgcctctgcacaggtgtcagaatgtgcttcagacttaaattaaataaaactagttgcatgaga

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