LOCUS       XM_071365407            2943 bp    mRNA    linear   VRT 18-FEB-2025
DEFINITION  PREDICTED: Salvelinus alpinus dicer 1, ribonuclease type III
            (dicer1), transcript variant X6, mRNA.
ACCESSION   XM_071365407
VERSION     XM_071365407.1
DBLINK      BioProject: PRJNA1211668
KEYWORDS    RefSeq.
SOURCE      Salvelinus alpinus (Arctic char)
  ORGANISM  Salvelinus alpinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salvelinus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_092110) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_045679555.1-RS_2025_01
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 01/27/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2943
                     /organism="Salvelinus alpinus"
                     /mol_type="mRNA"
                     /db_xref="taxon:8036"
                     /chromosome="25"
     gene            1..2943
                     /gene="dicer1"
                     /note="dicer 1, ribonuclease type III; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins"
                     /db_xref="GeneID:139553264"
     CDS             364..2799
                     /gene="dicer1"
                     /codon_start=1
                     /product="endoribonuclease Dicer isoform X5"
                     /protein_id="XP_071221508.1"
                     /db_xref="GeneID:139553264"
                     /translation="

MSGLQLVTPASNPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGKTFIAVILTKELSHQIRGDFAEHGKRTVFLVNTASSVIQQAAIVRTHSDLQVGEYTSAEKISAWSGEKWSQEMIENQVLVMTCHIFLHVLKNGVLPLSKLNLVVFDECHLAITDHPYREIMKLCEGSLCSPRILGLTASILNGKCDPSELEQKIQNLERILRSNAETATDLVVLDRYASQPREVVLDCGPYLDKSGLSECLLSELDEALHFLNDCNLSVPREDRDPTFITKQVLRDCRAVLLVLGPWCADKVAGIMVRELQKYIKHEQEEINRKFLLFTDTILRKVHALCEEHFSPASLDLKFVTPKVIRLLEILHEYKPFERQQFESVEWYNNRNEDNYVSWSDSEDEDEDEEVKEKPEAIFPSPFTNILCGIIFVDRRYTAVVLNRLIKEAGKQDTDLAYISSNFITGHSIGRNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYVMLADSERAKTFEDDLKTYKAIEKILRNKCSKAAGVGEFEVEQELDDDNILPPYVLRSEDAGARVTVNTAIGHINRYCARLPSDPFTHLAPKCKTKELQDGRYQSTLYLPINSPLRVPVAGPTMNCARLAEKAVALLCCEKLHKKGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKANSLNSSGMDSTRCQMRSTGMLAHVDSSASHSCVKLAGCPLGGGPFCITTGRDWEPHRAVHNWPSVVRVWQV"

     misc_feature    457..1050
                     /gene="dicer1"
                     /note="DEXH-box helicase domain of endoribonuclease Dicer;
                     Region: DEXHc_dicer; cd18034"
                     /db_xref="CDD:350792"
     misc_feature    order(457..468,475..477,526..549,670..672,859..861,
                     952..954)
                     /gene="dicer1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350792"
     misc_feature    order(634..639,706..711,784..786,790..795,802..804,
                     877..885)
                     /gene="dicer1"
                     /note="nucleic acid binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:350792"
     misc_feature    1144..1428
                     /gene="dicer1"
                     /note="Partner-binding domain of the endoribonuclease
                     Dicer; Region: Dicer_PBD; cd15903"
                     /db_xref="CDD:277191"
     misc_feature    order(1159..1164,1171..1173,1177..1182,1357..1362,
                     1369..1374,1381..1383,1390..1395,1402..1404)
                     /gene="dicer1"
                     /note="Trbp binding interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:277191"
     misc_feature    1447..2019
                     /gene="dicer1"
                     /note="C-terminal helicase domain of the endoribonuclease
                     Dicer; Region: SF2_C_dicer; cd18802"
                     /db_xref="CDD:350189"
     misc_feature    order(1672..1680,1888..1890,1945..1947,1951..1953)
                     /gene="dicer1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:350189"
     misc_feature    order(1900..1902,1906..1908,1981..1983,1987..1989)
                     /gene="dicer1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350189"
     misc_feature    2215..2481
                     /gene="dicer1"
                     /note="Dicer dimerization domain; Region: Dicer_dimer;
                     pfam03368"
                     /db_xref="CDD:460900"
ORIGIN      

cccaggtggaaggaggtatcgtggtggggaagttcctgacagcagcaagagggattggaggagagtgtatcagacgaaatatcaggacaattttcattcaagacggcccaataaaaaatatttattaggaaggaagaatcttcagctcctgaagcactgtcattaaagcctttcaactgtgtagagctcctctagttaagatgtgggggagtgtgatgagctgattgatgagcgttgatcatgaagcccagagtaagtgctgcctggtccatcacagagtatgaccctaccttaagttttagaggaagagaatgaggaaatgagatagactgcacccccagtatcccccagtcctgaagcaacatgtcaggactccagctagtcacccccgcctccaatcccatggggcctttctttggcctcccgtggcaacaggaggccatccacgacaacatctacacgcctaggaaatatcaggttgaacttcttgaagcagctcttgaacacaatactatcgtctgtttaaatactggctcagggaagacctttattgcagtaatcttaactaaagagctttcccaccaaatccggggagactttgccgaacatgggaagaggacagttttcctggtgaatacagcatcgtctgtgattcagcaagcagctattgttaggacccactctgatctccaggttggagaatacaccagcgcggagaagatctccgcatggtccggggaaaagtggagccaagaaatgatcgaaaatcaggtgctcgttatgacttgccatatcttcctgcatgtgctgaagaatggagtgttgccactatcgaaactcaacctggtggtgtttgatgagtgtcacctggcaatcacagaccatccctaccgggagataatgaagctatgtgagggctccctgtgcagccctcgcatcctgggcctcacagcatccattctgaatggtaaatgtgacccatctgaactggagcagaagatccagaacctggagcggatcttaaggagtaatgcagagaccgctactgaccttgtagtcctcgacagatatgcttcccagcccagagaagtggtgctggactgtggaccctacctggacaagagtggcctctctgagtgtctgctgagcgagctggatgaggctctccacttcctcaacgactgcaacctatctgtgcctcgagaggacagagaccccaccttcataaccaaacaggtgctgagggactgccgggcagtgcttttggtgctggggccatggtgtgctgacaaggtggctggtatcatggtgagggagctacagaagtacatcaaacacgaacaggaagagatcaacaggaagttcctgctcttcactgacaccatcctgaggaaggtccacgctctgtgcgaagagcacttctcccccgcttctttggacctaaagttcgtgacccctaaggtcatccgtctcttagagatcctccatgagtacaagcccttcgagaggcagcagtttgagagtgtggagtggtacaacaaccgcaacgaggacaactacgtatcgtggagtgactcagaggacgaagacgaggatgaggaggtgaaggagaagcctgaggctatcttcccctcgccattcaccaacattctgtgtgggatcatcttcgtggataggcgctacactgccgtcgtcctcaaccggctgataaaagaggccgggaagcaggacacagatctggcctacatcagcagtaacttcatcaccggtcacagcatcggcaggaaccagccacgcaacaaacagatggaggtggaattcaggaagcaggaagaggttctgcgtaagttccgagcccacgagaccaacctgctcatagcgaccagcatcgtggaggaaggagtggatattcccaaatgtaacctggtggtgcggttcgacctgcccactgagtacaggtcctacgttcagtctaaaggccgagccagagctcctgtatccaactacgtcatgctggctgacagtgagagggccaagaccttcgaggatgacctaaagacctacaaggccatagagaagattctgaggaataagtgttccaaggcagcaggggtcggtgagtttgaggtggaacaggagctggatgatgacaacatcctgcctccctacgtgctccgctctgaggacgcaggggcccgcgtcaccgtcaacaccgccatcggacacatcaacagatactgtgcccgtctgcccagtgacccgtttacccacctggcacccaagtgtaagaccaaggagcttcaggatgggcgctaccagtcaaccctctacctgcccatcaactcccctctacgggtgcccgtcgctgggccgacaatgaactgtgcaagactggcagagaaagcagtagcactgctttgttgtgaaaagcttcacaaaaaaggtgagttagatgaccacttgatgcctgtggggaaggagacagtgaagtatgaggaggagctggatctccatgatgaggaggagaccagtgttccaggcaggccaggatccaccaagaggaggcagtgctaccctaaagctaacagcctcaattcatcgggcatggactctacaaggtgtcaaatgcgttccacagggatgctggcccatgttgactccagtgcttcccacagttgtgtcaagttggctggatgtcctttgggtggtggaccattctgtatcacaaccggccgtgattgggagccccatagggcggtgcacaattggcccagcgtcgtccgggtttggcaggtgtaggcagtcattataccggagtgtcttcgggacagttaccctgtaccgcagcagtcttactacctgtatgtggtcggcatggtcctcaccacccctctgcctgatgagctcaacttccgccgcaggaagctctaccctccagaagac

//