2025-08-29 09:14:01, GGRNA.v2 : RefSeq release 231 (Jul, 2025)
LOCUS XM_070645691 2093 bp mRNA linear INV 28-DEC-2024 DEFINITION PREDICTED: Chironomus tepperi visceral mesodermal armadillo-repeats (vimar), mRNA. ACCESSION XM_070645691 VERSION XM_070645691.1 DBLINK BioProject: PRJNA936183 KEYWORDS RefSeq. SOURCE Chironomus tepperi ORGANISM Chironomus tepperi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Chironomoidea; Chironomidae; Chironominae; Chironomus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_027226476) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_022539635.2-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/27/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2093 /organism="Chironomus tepperi" /mol_type="mRNA" /strain="1889" /db_xref="taxon:113505" /chromosome="Unknown" /sex="hermaphrodite" /tissue_type="whole larval tissue" /dev_stage="Larval" gene 1..2093 /gene="vimar" /note="visceral mesodermal armadillo-repeats; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:139094579" CDS 158..1990 /gene="vimar" /codon_start=1 /product="GTPase-GDP dissociation stimulator vimar" /protein_id="XP_070501792.1" /db_xref="GeneID:139094579" /translation="
METNEIVNELGKLSMTDDVLQVEKMLGSLLEVPFDSYSSLDIKNTFLDLLTKNTPNINLLIVKCIAEATKNPNQRNKFSNGDVLEKLMDMLNGALSNRDIELTSQLCRALGNIFYSNDDSRNIIFHYDGGATLINLLDVSNNEIKVFDELQTFSKVRSGVLSNYLLGNEELSQKAIEMKIIDKIQTRIDDALNPYNDALLEHLLPLLSILTEQVSDLIFNSEIIICIAKIFKQSTSADVTESCLELFQCQACENDEIKLLLAQQHVCEHIFESLEKYKTFTGNVDFRSLTKLSCDLIVLILTGDEAMHYLDATPLLSLIQQWLNSSDEYLVATSVLALGNFARTDNHCIKMVEDKVLLKLIDILKTSTQRELSDVNSRLQHALLSAIRNLVIPKENKKAVIESGLLEIMLPILNDQQQPPVVFKVLGTLRMLIDGQDELALKILSDAQLIEKCVGWARKTPDMVGVNSEASRLLAWLIKNAYRLRSNEGLSSKPLEAFISVDGSVDVLVKMLSSAHVVMQNEAVISLTIIAMLIHKHRALSQMLIDANFADAISDFICRISETERITNEIIDNLSTLITVLKKSDEMKNYFDEKSIDEKAIPRIRELATL"
polyA_site 2093 /gene="vimar" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
taaacatttattaaagaagcacaaacatataaacgatatatatagacagaagtatcaattttcaaatcatatttatgttttgcatagtacgcctttcaaaaagcaataaattttttaaataacagtgttaaaagaagaacgaatatattaaggaagaatggagactaatgaaattgtaaatgaattaggaaaattatcaatgactgatgatgtcttgcaagttgaaaagatgttggggagcttgttggaagtaccattcgactcatattcatcgctagacatcaaaaatacatttttagatttattgacaaaaaacacacccaacataaatcttctgattgtcaagtgtattgcggaagcaacaaaaaatccaaatcaacgaaataaattctcaaatggtgatgtcttagaaaagcttatggatatgcttaatggagcattatcaaatcgagatatagaattaacatctcaattatgtcgtgcgttaggcaatatattttattctaatgatgattcaagaaatatcatatttcattatgacggcggtgcaactcttattaacttactggatgtttcaaacaatgaaattaaggttttcgatgagttgcaaacattttcaaaagttagaagtggtgttttgtcgaattatcttttgggaaatgaggaattgagtcaaaaagccattgaaatgaaaatcattgataaaatacagaccagaattgatgatgcattaaatccatacaatgatgcattacttgagcatttgcttccacttttaagcatcttgactgaacaagtgtccgatctaatcttcaactctgagataataatttgtatcgcgaaaattttcaagcaatcaacaagcgccgatgtgacggaatcctgcttggaattgtttcagtgccaagcatgcgaaaatgatgagattaagctacttttagcacaacaacatgtttgtgaacatatatttgagtcgctggagaaatacaaaacttttactggaaatgtagactttagaagcttgacaaaactctcgtgtgatctaattgtattaatcttgacaggagatgaagcaatgcattatttagatgcaacacctctattatcattaattcagcaatggctcaattcaagtgatgagtatttggttgccacgagtgtcctggctttgggaaattttgccaggactgacaatcattgcatcaaaatggttgaagataaagttttattaaaactcatcgatattttaaaaacaagtactcagcgtgaactgtctgatgttaattctcgacttcagcatgcattacttagtgccatcagaaatctagtcattccaaaggaaaataagaaggcagtaattgagtctggattacttgaaatcatgctaccaatcctgaatgatcaacaacaaccgcctgtagtgtttaaggttttaggaactttaaggatgttaatcgatggacaagatgaattggcactaaaaattttgagtgatgcacaactaattgaaaaatgtgttggatgggcgagaaaaactcccgatatggttggtgtaaatagtgaagcatcacgattattagcatggctcattaaaaatgcatatcgattgagaagtaatgaaggattaagctcaaaacctttagaagcatttatatctgtcgatggaagtgtcgatgtgcttgttaaaatgctttcatcagcacatgtcgttatgcaaaatgaagcagtgatttcattaactattattgccatgttaattcataaacatcgagctttgagccagatgcttattgatgctaattttgcagacgcaatttcagatttcatttgtcgcatttcggaaactgagagaatcacgaacgaaataattgacaatttgagcacattaattacagtattaaagaaatcagatgagatgaagaattattttgatgaaaaatcaattgacgagaaagcaattccacgaatacgggaattggcaactttgtaatcagagaactttatgtgtgtttaatttttttgataataaattttttattctgaaatgtactaaaagtctacaatactaaaatgtttatttgtttggaaaatca
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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