LOCUS       XM_070477890            2742 bp    mRNA    linear   MAM 18-DEC-2024
DEFINITION  PREDICTED: Odocoileus virginianus dicer 1, ribonuclease III
            (DICER1), transcript variant X5, mRNA.
ACCESSION   XM_070477890
VERSION     XM_070477890.1
DBLINK      BioProject: PRJNA926659
KEYWORDS    RefSeq.
SOURCE      Odocoileus virginianus (white-tailed deer)
  ORGANISM  Odocoileus virginianus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Cervidae; Odocoileinae; Odocoileus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_069689) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_023699985.2-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2742
                     /organism="Odocoileus virginianus"
                     /mol_type="mRNA"
                     /isolate="20LAN1187"
                     /db_xref="taxon:9874"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="tongue muscle"
                     /ecotype="Illinois"
     gene            1..2742
                     /gene="DICER1"
                     /note="dicer 1, ribonuclease III; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 10
                     Proteins"
                     /db_xref="GeneID:110140617"
     CDS             300..2654
                     /gene="DICER1"
                     /codon_start=1
                     /product="endoribonuclease Dicer isoform X2"
                     /protein_id="XP_070333991.1"
                     /db_xref="GeneID:110140617"
                     /translation="

MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDLNGNGKRTVFLANSANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLVMTCYVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVMLADTDKIKGFEEDLKTYKAIEKILRNKCSKSVDTGEADTEPVVDDDDIFPPYVLRSEDGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAVSIDSRMFEGELSQARSALLPVRDRNGPDDTFT"

     misc_feature    423..1016
                     /gene="DICER1"
                     /note="DEXH-box helicase domain of endoribonuclease Dicer;
                     Region: DEXHc_dicer; cd18034"
                     /db_xref="CDD:350792"
     misc_feature    order(423..434,441..443,492..515,636..638,825..827,
                     918..920)
                     /gene="DICER1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350792"
     misc_feature    order(600..605,672..677,750..752,756..761,768..770,
                     843..851)
                     /gene="DICER1"
                     /note="nucleic acid binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:350792"
     misc_feature    1110..1394
                     /gene="DICER1"
                     /note="Partner-binding domain of the endoribonuclease
                     Dicer; Region: Dicer_PBD; cd15903"
                     /db_xref="CDD:277191"
     misc_feature    order(1125..1130,1137..1139,1143..1148,1323..1328,
                     1335..1340,1347..1349,1356..1361,1368..1370)
                     /gene="DICER1"
                     /note="Trbp binding interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:277191"
     misc_feature    1413..1991
                     /gene="DICER1"
                     /note="C-terminal helicase domain of the endoribonuclease
                     Dicer; Region: SF2_C_dicer; cd18802"
                     /db_xref="CDD:350189"
     misc_feature    order(1644..1652,1860..1862,1917..1919,1923..1925)
                     /gene="DICER1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:350189"
     misc_feature    order(1872..1874,1878..1880,1953..1955,1959..1961)
                     /gene="DICER1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350189"
     misc_feature    2184..2450
                     /gene="DICER1"
                     /note="Dicer dimerization domain; Region: Dicer_dimer;
                     pfam03368"
                     /db_xref="CDD:460900"
ORIGIN      

cgggcggcaccgggaggcctgggctgtgacgcgcgcgccggagcgggggtccgatggttcttgaaggcccgcggcgccccgtgctgcaggttacctagggtatgaattaatacagacttggaaactgaaagaacttagaatcagcattttgagagcagaagcttgggtatgctgtgattttccaataaactgctatcacaatgtcaaaatgcagttcagacaacagcaacacagagatctcaaacattaagacgtaagctgtgctagaacaaaaatgcaatgaaagaaacactggatgaatgaaaagccctgctttgcaacccctcagcatggcaggcctgcagctcatgacccctgcttcctcaccaatgggtcctttctttggactgccatggcaacaagaagcaattcatgataacatttatacgccaagaaaatatcaggtggaactgcttgaagcagctctggatcataataccatagtctgtttaaacactggctcagggaagacgtttattgcagtactactcactaaagagctgtcttatcagatcaggggagacctcaacggcaatggcaaaaggacggtgttcttggccaactctgcaaaccaggttgctcaacaagtgtcagctgtcagaactcactcagatctcaaggttggggaatactcaaacctggaagtaagtgcatcttggacaaaagagaaatggaaccaagagtttactaaacaccaggttctcgttatgacttgctatgtcgccttgaatgttttgaagaatggttacttatcactgtcagacattaaccttttggtgtttgatgagtgtcatcttgcaatcctagaccacccctaccgagaaattatgaagctttgtgaaaattgtccatcttgtcctcgtattttgggactaactgcttccattttaaatgggaaatgtgatccagaggaattggaagaaaaaattcagaaactggagaaaattcttaagagtaatgctgaaactgcaactgacttggtggtcttagacagatatacttctcagccatgtgagattgtggtagactgtggaccatttactgacagaagtgggctttatgaaagactgctgatggagttagaagaagcacttaattttatcaatgactgtaacatatctgtacattcaaaagaaagagattctactttaatttctaaacagatactctcagactgtcgtgcggtactggttgtcctgggaccctggtgtgctgataaagtagctggaatgatggtcagagagctacagaaatacatcaaacacgagcaagaggagctgcaccggaagtttctattgtttacagacactttcctaaggaaaatccacgccctgtgtgaagagcacttctcacctgcctcccttgacctgaagtttgtcactcctaaggtaataaagctgctcgagatcctccgcaagtacaaaccgtacgagcggcagcagtttgaaagcgtggagtggtataataataggaaccaggataattacgtgtcctggagcgattctgaggatgacgaggaagatgaagagattgaagagaaagaaaagccagagacaaattttccttctccatttaccaatatcttgtgtggaattatttttgtggaaagaagatacacagccgtggtcttaaacagattgataaaggaagctggcaaacaagatccagagctggcttacatcagcagcaattttataactggacatggcattggaaagaatcagcctcggaacaaacagatggaagcggaattcagaaaacaggaagaggtacttaggaaatttcgagcgcatgaaaccaacctgctcattgcaacaagtattgtggaagagggtgttgacataccgaaatgcaacttggtggttcgtttcgatctgcccacggagtatcgatcctacgttcagtctaagggaagagctagggcacccatctctaattatgtgatgttagcagatacggataaaataaagggttttgaagaagaccttaaaacatacaaagctattgaaaagatcttgcgaaacaaatgttccaagtcagttgataccggggaggccgacacggagcccgtggtggatgacgacgatattttcccaccatatgtgctgaggtctgaggacggtccccgcgtcacaatcaacacggccattgggcacgtcaacagatactgtgctagattaccaagtgatccgtttactcatctggctcctaaatgtagaacccgagagttgcctgatggtacattttattcaactctttatctgccaattaactcacctcttcgagcttccattgttggtcccccaatgagctgcattcgattggctgaaagagtcgtggctctcatttgctgtgaaaaactgcacaaaattggtgaactggatgaccatttgatgccagttgggaaggagactgttaaatacgaggaagagctggatttacacgatgaagaagagaccagtgttccaggaagaccaggctccacgaaacgaagacagtgctacccgaaagcagttagtattgattccagaatgtttgagggagagctatcccaagcccggtcagccctgttacctgtacgtgatcggaatggtcctgacgacacctttacctgatgagctcaacttcagaaggcggaagctctacccgcctgaggacaccacaagatgctttggaatactgacagccaagcccatacctcag

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