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Previous release (v1)
2025-12-08 10:42:26, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_070357903 10891 bp mRNA linear MAM 12-DEC-2024 DEFINITION PREDICTED: Bos mutus dicer 1, ribonuclease III (DICER1), transcript variant X7, mRNA. ACCESSION XM_070357903 VERSION XM_070357903.1 DBLINK BioProject: PRJNA1191006 KEYWORDS RefSeq. SOURCE Bos mutus (wild yak) ORGANISM Bos mutus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091637) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_027580195.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/05/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..10891 /organism="Bos mutus" /mol_type="mRNA" /isolate="GX-2022" /db_xref="taxon:72004" /chromosome="21" /sex="male" /tissue_type="blood" gene 1..10891 /gene="DICER1" /note="dicer 1, ribonuclease III; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:102270004" CDS 840..6500 /gene="DICER1" /codon_start=1 /product="endoribonuclease Dicer isoform X3" /protein_id="XP_070214004.1" /db_xref="GeneID:102270004" /translation="
MVLEGPRRPVLQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLVMTCYVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKHIKHEQEELHRKFLLFTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEADTEPVVDDDDVFPPYVLRPEDGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRESYPRPGQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWKKSIDSKSFISIANSSSAENENYCKHSTIVVPENAAHQGANRTSPLENHDQMSVNCRTLFSESPGKLQIEVSTDLTAINGLSYNKSLANGSYDLANRDFCQGNHLNYYKQEIPVQPTTSYPIQNLYNYENQPKPSDECTLLSNKYLDGNANTSTSDGSPVTAAVPGTAETGEAPPDRTASEQSPSPGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNTEKWEKDEMTKDCMLANGKLDDDFEEEEEEEEDLMWRAHKEDADDEDDFLEYDQEHIKFIDNMLMGSGAFVKKISLSPFSATDSAYEWKMPKKSSLGSLPFSSDFEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKAMCPTRENFTSQQKNLSGSRAAASGAGYRASVLKDLEYGCLKIPPRCMFDHPDADRTLRHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS"
misc_feature 873..1448
/gene="DICER1"
/note="DEXH-box helicase domain of endoribonuclease Dicer;
Region: DEXHc_dicer; cd18034"
/db_xref="CDD:350792"
misc_feature order(1032..1037,1104..1109,1182..1184,1188..1193,
1200..1202,1275..1283)
/gene="DICER1"
/note="nucleic acid binding site [nucleotide binding];
other site"
/db_xref="CDD:350792"
misc_feature 1542..1826
/gene="DICER1"
/note="Partner-binding domain of the endoribonuclease
Dicer; Region: Dicer_PBD; cd15903"
/db_xref="CDD:277191"
misc_feature order(1557..1562,1569..1571,1575..1580,1755..1760,
1767..1772,1779..1781,1788..1793,1800..1802)
/gene="DICER1"
/note="Trbp binding interface [polypeptide binding]; other
site"
/db_xref="CDD:277191"
misc_feature 1845..2423
/gene="DICER1"
/note="C-terminal helicase domain of the endoribonuclease
Dicer; Region: SF2_C_dicer; cd18802"
/db_xref="CDD:350189"
misc_feature order(2076..2084,2292..2294,2349..2351,2355..2357)
/gene="DICER1"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:350189"
misc_feature order(2304..2306,2310..2312,2385..2387,2391..2393)
/gene="DICER1"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:350189"
misc_feature 2616..2882
/gene="DICER1"
/note="Dicer dimerization domain; Region: Dicer_dimer;
pfam03368"
/db_xref="CDD:460900"
misc_feature 3384..3752
/gene="DICER1"
/note="PAZ domain, dicer_like subfamily. Dicer is an RNAse
involved in cleaving dsRNA in the RNA interference
pathway. It generates dsRNAs which are approximately 20 bp
long (siRNAs), which in turn target hydrolysis of
homologous RNAs. PAZ domains are named...; Region:
PAZ_dicer_like; cd02843"
/db_xref="CDD:239209"
misc_feature order(3573..3575,3612..3614,3630..3632,3642..3644,
3696..3698,3720..3722,3726..3728)
/gene="DICER1"
/note="nucleic acid-binding interface [nucleotide
binding]; other site"
/db_xref="CDD:239209"
misc_feature 4617..>4892
/gene="DICER1"
/note="Ribonuclease III family; Region: RIBOc; smart00535"
/db_xref="CDD:197778"
misc_feature order(4668..4673,4680..4685,4692..4694,4701..4706,
4713..4718,4722..4730,4758..4760)
/gene="DICER1"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238333"
misc_feature 5775..6269
/gene="DICER1"
/note="Ribonuclease III C terminal domain. This group
consists of eukaryotic, bacterial and archeal ribonuclease
III (RNAse III) proteins. RNAse III is a double stranded
RNA-specific endonuclease. Prokaryotic RNAse III is
important in post-transcriptional...; Region: RIBOc;
cd00593"
/db_xref="CDD:238333"
misc_feature order(5835..5840,5847..5852,5859..5861,5868..5873,
5880..5885,5889..5897,5925..5927,6189..6191,6222..6224)
/gene="DICER1"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238333"
misc_feature order(5835..5837,5844..5846,5856..5858,6159..6161,
6168..6170)
/gene="DICER1"
/note="active site"
/db_xref="CDD:238333"
misc_feature order(5844..5846,6159..6161,6168..6170)
/gene="DICER1"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:238333"
misc_feature 6282..6470
/gene="DICER1"
/note="double-stranded RNA binding motif of
endoribonuclease Dicer and similar proteins; Region:
DSRM_DICER; cd10843"
/db_xref="CDD:380680"
misc_feature order(6282..6287,6291..6296,6303..6308,6315..6320,
6330..6332,6345..6353,6357..6359,6363..6365,6414..6425,
6432..6434)
/gene="DICER1"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:380680"
polyA_site 10891
/gene="DICER1"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
atctcattttctggtcatcctagttccgggttggggatggggtgggttgggggaaggaggtggggttaattgtcttccctaatacggagggccctggaccacaaaccctggggaaatgcaggcgagtgggacggtcctttaaaaaggggatggggcggtgaaaaagagcgccgagctctcgggagaacaattaacggccaaggcgaagggccacgtttagggggcggtccgtgccagaaggggcaaccatgaaggcggacgaattccgagcgccagcagaattctcgccgagccaagcgagcgtccgcaggccgggcgtgcaggcaccgggcgggcggcgaaggtgcctggcctccgcgcgggcccgctgaacgtccacgtccagccccggctcctccgggccgcaaacaccgccaggggcctctgccgctcgcgtccactgtctcccggctcctgagtggctggggggccgggattaacctttcaccgccgcgcgctgtccaatcacaggctcgctctcatgccggcgcggggcgagcgggggagagcgggggcgcgggcgccggggagattctccaagccgccgtgcgccgttgccgcggggccgtgcgcgggccgcgagcgagccgggcgctgcgcagtctccgcaggcgccggcgggaggggtcgaggctcggaggcgcggcgcggcgcgggctgctccaggccccaggttggatggagtgacctgacagcggggacgaggcgacggcgagcgggaggacatggcggcggcggcggcggcgccgggcggcaccgggaggcctgggctgtgacgcgcgcgccggagcgggggtccgatggttctcgaaggcccgcggcgccccgtgctgcaggttgaactgcttgaagcagctctggatcataataccatagtctgtttaaacactggctcagggaagacgtttattgcagtactactcactaaagagctgtcttatcagatcaggggagacttcaacagaaatggcaaaaggacggtgttcttggtcaactctgcaaaccaggttgcccaacaagtgtcagctgtcagaactcactcagatctcaaggtcggggaatactcaaacctagaagtaagtgcatcttggacaaaagagaaatggaaccaagagtttactaaacatcaggttctcgttatgacttgctatgtcgccttgaatgttttgaaaaatggttacttatcactgtcagacattaaccttttggtgtttgatgagtgtcatcttgcaatcctagaccacccctaccgagaaattatgaagctttgtgaaaattgtccatcatgtcctcgtattttgggactaactgcttccattttaaatgggaaatgtgatccagaggaattggaagaaaagattcagaaactggagaaaattcttaagagtaatgctgaaactgcaactgacttggtggtcttagacagatatacttctcagccatgtgagattgtggtagactgtggaccatttactgacagaagtgggctttatgaaagactgctgatggagttagaagaagcacttaattttatcaatgactgtaacatatctgtacattcaaaagaaagagattctactttaatttctaaacagatactctcagactgccgtgcggtcctggttgtcctgggaccctggtgtgccgataaagtagctggaatgatggtcagagagctgcagaaacacatcaaacatgagcaagaggagctgcaccggaagtttctgttgttcacagacactttcctacggaaaatccacgccctgtgtgaagagcacttctcccctgcctcgcttgacctgaagtttgtcactcctaaagtaataaagctgctcgagatcttacgcaaatacaaaccgtatgagcggcagcagtttgaaagcgtggagtggtataataataggaaccaggataattacgtgtcctggagcgattctgaggatgacgaggaagatgaagagattgaagagaaagaaaagccagagacaaattttccttctccgtttaccaacattttgtgtggaattatttttgtggaaagaagatacacagccgtggtcttaaacagattgataaaggaagctggcaaacaagatccagagctggcttacatcagcagcaattttataactggacatggcatcggaaagaatcagcctcggaacaaacagatggaagcggaattcagaaaacaggaagaggtacttaggaaatttcgagcacatgaaaccaacctgcttattgcaacaagtattgtggaggagggtgttgacataccgaaatgcaacttggtggttcgtttcgatctgcccacagagtatcgatcctatgttcagtcgaagggaagagcgagggcacccatctctaattatgtaatgttagcagacacagataaaataaagagttttgaagaagaccttaaaacatacaaagctattgaaaagatcttgcgaaacaaatgttccaagtcggttgataccggggaggccgacacggagcctgtggtggatgacgacgatgttttcccaccgtatgtgctgaggcctgaggatggtccccgcgtcacgatcaacacagccattgggcacgtcaacagatactgtgctagattaccaagtgatccgtttactcatctggctcctaaatgtagaacccgagagttgcctgatggtacattttattcaactctttatctgccaattaactcacctcttcgagcctccattgttggtcccccaatgagctgcattcggttggctgaaagagtcgtggctctcatttgctgtgaaaaactgcacaaaattggcgaactggatgaccatttgatgccagttgggaaggagactgttaaatatgaggaagagctggatttacacgatgaagaagagaccagtgttccaggaagaccaggttccacaaaacgaagacagtgctacccaaaagcaattccagaatgtttgagggagagctaccccaggcccggtcagccctgttacctgtacgtgatcggaatggtcctgacgacacctttacctgatgagctcaacttcagaaggcggaagctctacccccctgaggacaccacaagatgctttggaatactgacagccaagcccatacctcagatcccacactttcctgtgtacacgcgctctggagaggtgaccatatctattgagttgaagaagtccggcttcacgttatctctgcaaatgcttgagttgatcacaaggcttcaccagtatatattctcacatattcttcggcttgaaaaacctgcactagaatttaaacccacagacgcggactcagcctactgcgttctacctcttaatgttgttaatgactccagcactttggacattgactttaaattcatggaagatatcgagaaatctgaagctcgcataggcattcccagcacaaagtattcaaaagaaactccctttgttttcaaattagaagattaccaagatgcagttatcattccaagataccgcaattttgatcagcctcatcgattttatgtcgctgacgtgtacactgatcttacccccctgagtaaatttccttcccctgagtatgaaacgtttgcggagtattataaaacaaagtataaccttgacctgaccaatctcaaccagccgctgctggacgtggaccacacgtcttcacgactcaatcttttgacacctcgtcatttgaatcagaaggggaaagctctccctctgagcagtgctgagaagaggaaagccaagtgggagagcctgcagaataagcagatactggttccagaactctgtgctatacatccaattccagcatcactgtggagaaaagccgtttgtctcccgagcatactttaccgccttcactgccttctgactgcagaggagctcagagcccagacggccagcgacgctggtgtgggagtcaggtcacttcctgtggattttagataccctaacttagacttcgggtggaaaaaatctatcgacagcaaatctttcatctcaattgctaactcctcttcagctgaaaatgagaattactgtaagcacagcacaattgtcgtccctgaaaatgctgcacatcaaggtgctaatagaacctcccctctagaaaatcatgaccaaatgtctgtgaactgcagaacgttgttcagcgagtcacctggtaagctccaaattgaagtttcaacagatctgacagcaattaatggtctttcttacaataaaagtcttgccaatggcagttacgatttagctaacagagacttttgccaaggaaaccatctgaattactacaagcaggaaatacctgtacaaccaactacctcatatcccattcagaatttatacaattacgagaaccagcccaagcccagcgatgaatgtactctactgagtaataaataccttgatggaaatgctaacacatctacctcagatggaagtcccgtgacggctgccgtgcccggtactgcagagactggggaggcgcccccggacaggacggcttctgagcagagcccttctcctgggtactcctcgaggacgcttggccccaaccctgggctcattcttcaggctttgaccctttcgaacgctagtgatggatttaacctggagcggctcgagatgcttggcgactccttcctcaagcatgcgatcaccacgtatctcttctgcacttaccctgatgcgcatgagggccgcctttcctacatgagaagcaaaaaggtcagcaactgtaatctgtatcggcttggaaaaaagaaggggctgcccagccgcatggtggtgtccatatttgacccccctgtgaattggcttcctcctggttacgtagtaaatcaagacaaaagtaacacagagaaatgggaaaaagatgaaatgacaaaagactgcatgttggctaatggcaaactggacgatgacttcgaggaggaggaagaggag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cagacccacctcagttcagtcttcaggccccgttgatttaaaactttctatcttgctctgttagggtatctaatccttttacacaacatttaagccaccaaactgagaccttgatatcttcatttgaaacagcatctgaagttctgttagcgccctgaaccagtttgtgttcgctacggaactgaaactcatgtcttgtttattacctatatggttattttaattacatttaaataggtatattttttcaaccactgattgcttttcaggaacttaattatttccaaataaatttctttattttatattgtacatgagaagtttttaagatatgtttaagaccaagaatattgaaatgattttaaaagttgttggaatttgccagtagcaatacctagggaatttgcattgagactattgtattttccactagaggtgaaaatgatgttttgaaactaacttgtaaatatattttaatcattgtgtttttgttttttttccccctctagtccatttttatttggacatcacccaccatttaaattttctagatgcactcagaattcactgcagcagcaggttacgtagcaaaaatgcaaaggtgaacagaaagtgaaatttctggcttttctgctgtaaatagaacgaaagaaaaatgactaaaatcaagtaagactaacatgtataatttgacaataaaatacttagcatcacatgctgcagctgtttttaaggaacatgatgtgattcgttcatacaggaatcatgctgcagaagttcgcagtctgcaccttaagggtcacgattacctttagtcgttttttgtttttgtttctttcttttgtaataattgtagccaagtaaatctccaataaagttatggtctgttca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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