LOCUS       XM_070341947           11010 bp    mRNA    linear   INV 12-DEC-2024
DEFINITION  PREDICTED: Littorina saxatilis copper-transporting ATPase 1-like
            (LOC138969207), transcript variant X6, mRNA.
ACCESSION   XM_070341947
VERSION     XM_070341947.1
DBLINK      BioProject: PRJNA1148619
KEYWORDS    RefSeq.
SOURCE      Littorina saxatilis
  ORGANISM  Littorina saxatilis
            Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda;
            Caenogastropoda; Littorinimorpha; Littorinoidea; Littorinidae;
            Littorina.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_090250) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_037325665.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/06/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11010
                     /organism="Littorina saxatilis"
                     /mol_type="mRNA"
                     /isolate="snail1"
                     /isolation_source="shore boulder field crab ecotype"
                     /db_xref="taxon:31220"
                     /tissue_type="muscle from the foot"
                     /dev_stage="adult"
                     /geo_loc_name="Sweden"
                     /collection_date="2017"
                     /linkage_group="LG6"
     gene            1..11010
                     /gene="LOC138969207"
                     /note="copper-transporting ATPase 1-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 11 Proteins"
                     /db_xref="GeneID:138969207"
     CDS             173..5116
                     /gene="LOC138969207"
                     /codon_start=1
                     /product="copper-transporting ATPase 1-like isoform X4"
                     /protein_id="XP_070198048.1"
                     /db_xref="GeneID:138969207"
                     /translation="

MEREAVLRLGQLTSADDAVTIQNLLTDQKGVVDAKVQYETREARVRYRPTETNPPILLGVLEDRAFSATIMDIQQSGDAASQKVAIDVDGMTCQSCVRNIEGNISHLDGVKDIHVSLENKQALVVFDASQTSASAVAEGISNMGFDAKVALGGDSGEQTRVIRVEGMTCQSCVRTIEGTMGSKQGISSIRVSLPDNQAIVRFNPCLISARQICEQIDDMGFDASLSDDEFAEIATRNKTPGSSRQCVISIGGMTCNSCVKNIESNISDKPGVKAIKVSLADQNGVVTYDPQIVKAAEIAEMIDDMGFDAKVAQQEDESLSDDEFAQIAARKAGGNGRKSCVISIQGMTCNSCVKNIESNIGAQPGILNIKVSLTDSNGVVTYDSKVTDPAKIAEMIDDMGFDAAVAQHDFPMGDQLANLNRSSNATQTCTISIEGMTCQSCVKKIESNMGNSAGIFSIKVSLADKNCQVDFDPAVVTPAQIGRMISDMGYRAFSLGDAAGTETQTVVVSIKGMTCQSCVNTIEGKLSEHPAVKSIHVSLSDETGTIMYDPSSATPKMLAEAIDDMGFDCAVQDGLKQDRGDQGKTIAHSASAVQMSSTGAVHFNKKVDEAGEFEKCFLTIKGMTCASCVANIERNINKIEGVKSILVSLMAQRAEVKFDPAYILPSQIANAVSDIGFNAKVNEAEGLGQGTVELTITGMTCASCVHLIQSNLLKRHGLLTASVALATSSGKFTFDTEICGPRDIIDAIKDMGFEAYLMTDDDKKAARYDHRDDIKRWRTSFLLSLIFGLPAMIVMIYFMFFYKPSEEGGEDHSNTTTTRPHKKSHKPQFMIADGLSLENLLMFILATPVQFIGGRYFYVQAYKAIKHGATNMDVLVVLATTISYLYSLIVVLVAMGLHERVSPITFFETTPMLMVFISLGRWLEHIAKGKTSEALAKLLSLQPSEAVLVTVDKENTILSEKIISVELVQRGDILKVVPGGKIPIDGKVVSGQSNCDESLITGESMPVSKKEGSTVIGGSINQHGTLLTEATHVGADTTLSQIVKLVEEAQTSKAPIQNLADKIAGIFVPIVCTLSTITLLGWVIAGYVDIKLIEEDFVDNGEVSKSEMIFEKAFQYAITVLSIACPCALGLATPTAVMVGTGVGALNGILIKGGEPLETTHKVRCIVFDKTGTVTHGVPRVARVSMFVTDSVCSFVKMIAICGTAEASSEHPIASAIVKYAKETLEAAVLGKTTDFKAVPGCGLKCKASGIESLLTGLDMDGVRNRRNKQGSLVIRIDSKSSQPSDSLHQALQIDDLAGAVAPATYEVLIGNREWMNRNGLTVTEEMDEVMTEHENQGHTAVLCTVDGVIVSMLAVADTVKSEAHVAIHELKKLVPEIILLTGDNKKTARAIAKQIGIKKVFAEVLPSHKVKKIRQLQAEGHKVAMVGDGVNDSPALAQADVGIAIGTGTDVAVEAADIVLMNSNLLDVFAAIKLSRKTVERIYMNFFFACLYNLLGIPIAAGVFVPWGLSLKPWMASAAMAASSVSVVVSSLGLKLFKKPKMKDLVTQEYHESYAKEQGLQGGVKESNKKSYNVKQTAGENVDDDEIAVYCGADVDAASRSGSRQGSLLSRLSNKIKSATNTPDQLSLLNNDDDLNMNEDSLSARV"

     misc_feature    179..>421
                     /gene="LOC138969207"
                     /note="Cation-transporting P-type ATPase [Inorganic ion
                     transport and metabolism]; Region: ZntA; COG2217"
                     /db_xref="CDD:441819"
     misc_feature    428..616
                     /gene="LOC138969207"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(443..451,458..460)
                     /gene="LOC138969207"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    653..844
                     /gene="LOC138969207"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(671..679,686..688)
                     /gene="LOC138969207"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    911..1102
                     /gene="LOC138969207"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(929..937,944..946)
                     /gene="LOC138969207"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1193..1384
                     /gene="LOC138969207"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1211..1219,1226..1228)
                     /gene="LOC138969207"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1460..1648
                     /gene="LOC138969207"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1478..1486,1493..1495)
                     /gene="LOC138969207"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1691..1882
                     /gene="LOC138969207"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1709..1717,1724..1726)
                     /gene="LOC138969207"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2024..2212
                     /gene="LOC138969207"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(2039..2047,2054..2056)
                     /gene="LOC138969207"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2249..2440
                     /gene="LOC138969207"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(2267..2275,2282..2284)
                     /gene="LOC138969207"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2513..4717
                     /gene="LOC138969207"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     Region: P-type_ATPase_Cu-like; cd02094"
                     /db_xref="CDD:319783"
     misc_feature    order(3545..3547,3551..3553,4649..4651)
                     /gene="LOC138969207"
                     /note="putative Cu binding site [ion binding]; other site"
                     /db_xref="CDD:319783"
     misc_feature    order(3677..3685,3887..3889,4100..4108,4196..4198,
                     4316..4324,4382..4384,4391..4393,4400..4402,4457..4459,
                     4466..4468)
                     /gene="LOC138969207"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:319783"
     polyA_site      11010
                     /gene="LOC138969207"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

cccaaccctttcgatattgagagctacgtacaacttttaggacatgcgaccgactatggacaattgctctgtcatcggattggcggagaatgttatcagtattctccctgtgagcatttgagatcagttgtctcgtctcgaactttgctgtgtgcaggcatgcgaagaggagatggagagggaggcagtactgcgactaggtcagctgaccagcgctgacgatgcagtgaccatccaaaacttgttgaccgatcagaaaggcgttgtggacgccaaggtgcagtatgagacgagagaggcgcgtgtgaggtacaggcccacagagaccaaccccccgatcttgctgggtgtgctggaagaccgcgcgttctcagccaccatcatggacattcagcagtctggagacgccgcctcacagaaggtggccatcgacgttgacggcatgacctgccagtcgtgtgtgcgcaacattgagggcaacatctcacaccttgacggggtcaaggacatccacgtgtcgctggagaacaagcaggccctggtggtcttcgacgcgtcccagacgtcagccagcgccgtggcggaagggatcagtaacatgggattcgacgccaaggtggctttgggaggggactctggggaacaaacaagagtgattcgagtggagggcatgacctgccagtcctgcgtacgcaccatcgagggcaccatgggaagcaagcagggcatcagcagcattcgagtcagcttgcccgacaaccaggccatcgtacggttcaatccctgcctgatatctgcccggcagatttgtgaacagattgatgatatgggctttgatgcttctctcagtgacgatgaatttgcggaaattgcaactcggaataagacgccaggcagcagcaggcagtgtgtgatcagcattggaggaatgacgtgtaactcttgcgtgaagaacattgagtccaacatcagcgacaaaccaggggtcaaggccatcaaggtgtccttggctgaccagaacggtgtggtgacctacgaccctcagatcgtgaaggcggctgagatcgctgaaatgattgacgacatgggctttgacgctaaggtggctcagcaggaggatgagagcctgagtgacgatgagtttgcccagattgccgccaggaaggcaggagggaacggacgcaagtcttgtgtcatcagcattcagggcatgacgtgcaactcatgtgtgaagaacattgagtccaacatcggtgctcagccaggcatcctcaacatcaaagtgtccttgacagactctaatggcgtggtgacctatgacagcaaggtcacggatccagcgaagatcgctgaaatgattgatgacatggggtttgacgctgcagtggcccagcatgactttcccatgggtgaccagctggccaatctcaaccgttcgagcaacgccactcagacttgcaccatcagcatcgagggaatgacctgccagtcatgcgtgaaaaagattgaaagcaacatgggcaattcagcgggcatcttcagcatcaaagtgtctctcgctgacaagaactgtcaggtggattttgaccccgcagtggtgactcccgcccagatcgggcgaatgatttctgacatgggatacagagcgttttctcttggagacgcagcggggacagaaacacagacagtggtcgtatccatcaagggcatgacctgccagtcctgcgtcaacaccatcgagggcaaactgtcggaacacccggctgtcaagagtatccatgtgtcgctgtctgatgagacggggacaataatgtacgaccccagcagtgccacgcctaagatgctggctgaagccatcgatgacatgggattcgactgtgctgtgcaagatggcctcaaacaggacaggggagaccagggaaagacaattgctcattctgcgagtgcggttcaaatgagcagcactggcgctgtacacttcaacaaaaaagtggacgaggccggtgaattcgagaaatgcttcctcaccatcaagggcatgacctgtgcatcctgcgtcgccaacatcgagagaaacatcaataaaattgaaggcgtgaaaagtatcctggtgtccctgatggcacagagggcagaggtcaagtttgaccccgcctacatccttccctcacaaatcgccaacgcagtctccgacattggcttcaacgccaaggtcaacgaggcagagggactgggacaaggcactgtggaactaacaatcacaggcatgacgtgcgcatcatgtgttcacctgatccagagcaatttgttaaaacgccatggtcttctgacggcgtctgttgctttagccacctcttctggaaagttcacctttgacaccgagatctgcgggcccagagacatcattgacgccattaaggatatggggtttgaggcgtacctaatgacagatgatgacaagaaggccgctcgctacgatcacagggatgatatcaaacgatggagaacgtcgttcctgttgtcgctgatcttcgggctgccagccatgatagtgatgatctacttcatgtttttctacaaaccttcggaggagggaggggaggatcacagcaacaccaccaccacccgcccccacaagaagtcccacaagcctcagttcatgatcgctgatggcttgtccttggaaaatctcctcatgtttatcttggccacacctgtgcagttcatcggtggacgatacttctacgtccaagcgtacaaggcgataaaacacggagcgaccaacatggatgttctggttgtcctggcaaccaccatctcctacctgtattccttgattgtggttctggtggccatggggctgcacgagagagtttcacccatcactttctttgagaccacgcctatgttgatggtcttcatttcccttggcagatggctggaacatattgctaagggcaagaccagcgaagccctggccaagctgctatcactacagccatcagaagcggtgctggtgacggtggacaaggagaacaccatcctgtcggagaagatcatcagtgtggagctggtgcagcgcggtgacatcctcaaggtggtgccgggcggcaagatccccatcgacggcaaggtggtcagcggtcaatctaactgcgacgagtctctcatcacgggggagagcatgcctgtgtccaaaaaggaagggtccaccgtgattggtggcagtatcaaccagcacggcactctgctgacggaagcaacacacgttggggccgacaccacactctcacagattgtcaagctggtggaagaagcacagacatctaaggcccctattcagaatctggcagacaagatagctggtatctttgtgcctattgtgtgtacgctgtccactatcacgctgctgggctgggtcatcgctggatatgtggacattaaactcattgaagaagactttgtggacaacggagaagtgtcaaagagcgagatgatcttcgagaaggcgttccagtacgccatcacggtgctgagcatcgcctgtccctgtgccctcgggctggccacacccactgctgtcatggtggggacaggggtcggggcactcaacggcattctcatcaagggaggcgagccgctagaaaccacacacaaggtgcgttgcatcgtgtttgacaagactggcacagtaacacacggcgtgccccgagttgcgcgtgtgtccatgtttgtgacagactcggtgtgttctttcgtcaagatgatcgcaatctgtggcactgctgaggccagcagtgaacaccccatcgcttctgctatcgtcaagtatgccaaggagactctagaggcagcggtgctgggcaaaacgacagacttcaaggctgtgccagggtgcggcctcaagtgcaaggcgtccgggatcgaatccctgctgacggggctggacatggacggtgtgaggaaccgccgcaacaagcagggcagtttggtcatccgcatcgactccaagtccagtcagccgtccgacagtctgcaccaggccttgcagattgacgatctggcgggagcagtggcaccggcaacgtacgaagtgctgatcggaaaccgggagtggatgaatcgaaacggtctgacggtgacagaggaaatggatgaggtgatgacagagcatgagaatcagggtcatactgcagttctctgcactgttgatggtgtgattgtttccatgctggcggtagcagacacagtcaagtcggaggcccatgttgccatccatgagctgaagaagttggtgccagagattatcctcctgacgggcgacaacaagaaaacggcacgggccattgctaagcagattggaataaagaaggtgtttgcggaggtgttgccatcccacaaggtgaagaagattcgtcagctgcaggcagagggtcacaaggtggccatggttggagacggagtgaatgattcgccggccctagctcaggctgacgtcggcatcgctataggcactggcactgacgtggctgtggaggctgccgacattgttctcatgaatagcaacctcttggatgttttcgctgccattaaactgtcaagaaaaacagttgaacgcatctatatgaacttcttctttgcctgtctctacaacttacttggcatccccattgctgctggagtgtttgtaccttggggcctgtccctcaaaccctggatggcttccgctgctatggcagcctcctctgtctctgtcgtggtctcgtctctgggtctcaaattgttcaaaaagcccaagatgaaagatctggtaacacaggagtaccacgagtcctacgcgaaggaacagggtctccaaggaggggtcaaggagtccaacaagaagtcctacaacgtgaaacagacggcgggagagaatgttgatgacgatgaaatcgctgtctactgtggggccgatgtggacgcggcctccaggtcgggaagtcggcagggcagcttgt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