2025-09-14 17:52:50, GGRNA.v2 : RefSeq release 231 (Jul, 2025)
LOCUS XM_070341944 11059 bp mRNA linear INV 12-DEC-2024 DEFINITION PREDICTED: Littorina saxatilis copper-transporting ATPase 1-like (LOC138969207), transcript variant X3, mRNA. ACCESSION XM_070341944 VERSION XM_070341944.1 DBLINK BioProject: PRJNA1148619 KEYWORDS RefSeq. SOURCE Littorina saxatilis ORGANISM Littorina saxatilis Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Caenogastropoda; Littorinimorpha; Littorinoidea; Littorinidae; Littorina. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_090250) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_037325665.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/06/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..11059 /organism="Littorina saxatilis" /mol_type="mRNA" /isolate="snail1" /isolation_source="shore boulder field crab ecotype" /db_xref="taxon:31220" /tissue_type="muscle from the foot" /dev_stage="adult" /geo_loc_name="Sweden" /collection_date="2017" /linkage_group="LG6" gene 1..11059 /gene="LOC138969207" /note="copper-transporting ATPase 1-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:138969207" CDS 198..5165 /gene="LOC138969207" /codon_start=1 /product="copper-transporting ATPase 1-like isoform X2" /protein_id="XP_070198045.1" /db_xref="GeneID:138969207" /translation="
MLQACEEEMEREAVLRLGQLTSADDAVTIQNLLTDQKGVVDAKVQYETREARVRYRPTETNPPILLGVLEDRAFSATIMDIQQSGDAASQKVAIDVDGMTCQSCVRNIEGNISHLDGVKDIHVSLENKQALVVFDASQTSASAVAEGISNMGFDAKVALGGDSGEQTRVIRVEGMTCQSCVRTIEGTMGSKQGISSIRVSLPDNQAIVRFNPCLISARQICEQIDDMGFDASLSDDEFAEIATRNKTPGSSRQCVISIGGMTCNSCVKNIESNISDKPGVKAIKVSLADQNGVVTYDPQIVKAAEIAEMIDDMGFDAKVAQQEDESLSDDEFAQIAARKAGGNGRKSCVISIQGMTCNSCVKNIESNIGAQPGILNIKVSLTDSNGVVTYDSKVTDPAKIAEMIDDMGFDAAVAQHDFPMGDQLANLNRSSNATQTCTISIEGMTCQSCVKKIESNMGNSAGIFSIKVSLADKNCQVDFDPAVVTPAQIGRMISDMGYRAFSLGDAAGTETQTVVVSIKGMTCQSCVNTIEGKLSEHPAVKSIHVSLSDETGTIMYDPSSATPKMLAEAIDDMGFDCAVQDGLKQDRGDQGKTIAHSASAVQMSSTGAVHFNKKVDEAGEFEKCFLTIKGMTCASCVANIERNINKIEGVKSILVSLMAQRAEVKFDPAYILPSQIANAVSDIGFNAKVNEAEGLGQGTVELTITGMTCASCVHLIQSNLLKRHGLLTASVALATSSGKFTFDTEICGPRDIIDAIKDMGFEAYLMTDDDKKAARYDHRDDIKRWRTSFLLSLIFGLPAMIVMIYFMFFYKPSEEGGEDHSNTTTTRPHKKSHKPQFMIADGLSLENLLMFILATPVQFIGGRYFYVQAYKAIKHGATNMDVLVVLATTISYLYSLIVVLVAMGLHERVSPITFFETTPMLMVFISLGRWLEHIAKGKTSEALAKLLSLQPSEAVLVTVDKENTILSEKIISVELVQRGDILKVVPGGKIPIDGKVVSGQSNCDESLITGESMPVSKKEGSTVIGGSINQHGTLLTEATHVGADTTLSQIVKLVEEAQTSKAPIQNLADKIAGIFVPIVCTLSTITLLGWVIAGYVDIKLIEEDFVDNGEVSKSEMIFEKAFQYAITVLSIACPCALGLATPTAVMVGTGVGALNGILIKGGEPLETTHKVRCIVFDKTGTVTHGVPRVARVSMFVTDSVCSFVKMIAICGTAEASSEHPIASAIVKYAKETLEAAVLGKTTDFKAVPGCGLKCKASGIESLLTGLDMDGVRNRRNKQGSLVIRIDSKSSQPSDSLHQALQIDDLAGAVAPATYEVLIGNREWMNRNGLTVTEEMDEVMTEHENQGHTAVLCTVDGVIVSMLAVADTVKSEAHVAIHELKKLVPEIILLTGDNKKTARAIAKQIGIKKVFAEVLPSHKVKKIRQLQAEGHKVAMVGDGVNDSPALAQADVGIAIGTGTDVAVEAADIVLMNSNLLDVFAAIKLSRKTVERIYMNFFFACLYNLLGIPIAAGVFVPWGLSLKPWMASAAMAASSVSVVVSSLGLKLFKKPKMKDLVTQEYHESYAKEQGLQGGVKESNKKSYNVKQTAGENVDDDEIAVYCGADVDAASRSGSRQGSLLSRLSNKIKSATNTPDQLSLLNNDDDLNMNEDSLSARV"
misc_feature 228..>470 /gene="LOC138969207" /note="Cation-transporting P-type ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217" /db_xref="CDD:441819" misc_feature 477..665 /gene="LOC138969207" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(492..500,507..509) /gene="LOC138969207" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 702..893 /gene="LOC138969207" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(720..728,735..737) /gene="LOC138969207" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 960..1151 /gene="LOC138969207" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(978..986,993..995) /gene="LOC138969207" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1242..1433 /gene="LOC138969207" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1260..1268,1275..1277) /gene="LOC138969207" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1509..1697 /gene="LOC138969207" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1527..1535,1542..1544) /gene="LOC138969207" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1728..1925 /gene="LOC138969207" /note="Copper chaperone CopZ [Inorganic ion transport and metabolism]; Region: CopZ; COG2608" /db_xref="CDD:442020" misc_feature 2073..2261 /gene="LOC138969207" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(2088..2096,2103..2105) /gene="LOC138969207" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2298..2489 /gene="LOC138969207" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(2316..2324,2331..2333) /gene="LOC138969207" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2562..4766 /gene="LOC138969207" /note="P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B; Region: P-type_ATPase_Cu-like; cd02094" /db_xref="CDD:319783" misc_feature order(3594..3596,3600..3602,4698..4700) /gene="LOC138969207" /note="putative Cu binding site [ion binding]; other site" /db_xref="CDD:319783" misc_feature order(3726..3734,3936..3938,4149..4157,4245..4247, 4365..4373,4431..4433,4440..4442,4449..4451,4506..4508, 4515..4517) /gene="LOC138969207" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:319783" polyA_site 11059 /gene="LOC138969207" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cccaaccctttcgatattgagagctacgtacaacttttaggacatgcgaccgactatggacaattgctctgtcatcggattggcggagaatgttatcagtattctccctgtgagcatttgagatcagttgtctcgtctcgaactttgctgtgtgcagaagtgagctactaacagttcatcgataaaaacaaactgggatgttgcaggcatgcgaagaggagatggagagggaggcagtactgcgactaggtcagctgaccagcgctgacgatgcagtgaccatccaaaacttgttgaccgatcagaaaggcgttgtggacgccaaggtgcagtatgagacgagagaggcgcgtgtgaggtacaggcccacagagaccaaccccccgatcttgctgggtgtgctggaagaccgcgcgttctcagccaccatcatggacattcagcagtctggagacgccgcctcacagaaggtggccatcgacgttgacggcatgacctgccagtcgtgtgtgcgcaacattgagggcaacatctcacaccttgacggggtcaaggacatccacgtgtcgctggagaacaagcaggccctggtggtcttcgacgcgtcccagacgtcagccagcgccgtggcggaagggatcagtaacatgggattcgacgccaaggtggctttgggaggggactctggggaacaaacaagagtgattcgagtggagggcatgacctgccagtcctgcgtacgcaccatcgagggcaccatgggaagcaagcagggcatcagcagcattcgagtcagcttgcccgacaaccaggccatcgtacggttcaatccctgcctgatatctgcccggcagatttgtgaacagattgatgatatgggctttgatgcttctctcagtgacgatgaatttgcggaaattgcaactcggaataagacgccaggcagcagcaggcagtgtgtgatcagcattggaggaatgacgtgtaactcttgcgtgaagaacattgagtccaacatcagcgacaaaccaggggtcaaggccatcaaggtgtccttggctgaccagaacggtgtggtgacctacgaccctcagatcgtgaaggcggctgagatcgctgaaatgattgacgacatgggctttgacgctaaggtggctcagcaggaggatgagagcctgagtgacgatgagtttgcccagattgccgccaggaaggcaggagggaacggacgcaagtcttgtgtcatcagcattcagggcatgacgtgcaactcatgtgtgaagaacattgagtccaacatcggtgctcagccaggcatcctcaacatcaaagtgtccttgacagactctaatggcgtggtgacctatgacagcaaggtcacggatccagcgaagatcgctgaaatgattgatgacatggggtttgacgctgcagtggcccagcatgactttcccatgggtgaccagctggccaatctcaaccgttcgagcaacgccactcagacttgcaccatcagcatcgagggaatgacctgccagtcatgcgtgaaaaagattgaaagcaacatgggcaattcagcgggcatcttcagcatcaaagtgtctctcgctgacaagaactgtcaggtggattttgaccccgcagtggtgactcccgcccagatcgggcgaatgatttctgacatgggatacagagcgttttctcttggagacgcagcggggacagaaacacagacagtggtcgtatccatcaagggcatgacctgccagtcctgcgtcaacaccatcgagggcaaactgtcggaacacccggctgtcaagagtatccatgtgtcgctgtctgatgagacggggacaataatgtacgaccccagcagtgccacgcctaagatgctggctgaagccatcgatgacatgggattcgactgtgctgtgcaagatggcctcaaacaggacaggggagaccagggaaagacaattgctcattctgcgagtgcggttcaaatgagcagcactggcgctgtacacttcaacaaaaaagtggacgaggccggtgaattcgagaaatgcttcctcaccatcaagggcatgacctgtgcatcctgcgtcgccaacatcgagagaaacatcaataaaattgaaggcgtgaaaagtatcctggtgtccctgatggcacagagggcagaggtcaagtttgaccccgcctacatccttccctcacaaatcgccaacgcagtctccgacattggcttcaacgccaaggtcaacgaggcagagggactgggacaaggcactgtggaactaacaatcacaggcatgacgtgcgcatcatgtgttcacctgatccagagcaatttgttaaaacgccatggtcttctgacggcgtctgttgctttagccacctcttctggaaagttcacctttgacaccgagatctgcgggcccagagacatcattgacgccattaaggatatggggtttgaggcgtacctaatgacagatgatgacaagaaggccgctcgctacgatcacagggatgatatcaaacgatggagaacgtcgttcctgttgtcgctgatcttcgggctgccagccatgatagtgatgatctacttcatgtttttctacaaaccttcggaggagggaggggaggatcacagcaacaccaccaccacccgcccccacaagaagtcccacaagcctcagttcatgatcgctgatggcttgtccttggaaaatctcctcatgtttatcttggccacacctgtgcagttcatcggtggacgatacttctacgtccaagcgtacaaggcgataaaacacggagcgaccaacatggatgttctggttgtcctggcaaccaccatctcctacctgtattccttgattgtggttctggtggccatggggctgcacgagagagtttcacccatcactttctttgagaccacgcctatgttgatggtcttcatttcccttggcagatggctggaacatattgctaagggcaagaccagcgaagccctggccaagctgctatcactacagccatcagaagcggtgctggtgacggtggacaaggagaacaccatcctgtcggagaagatcatcagtgtggagctggtgcagcgcggtgacatcctcaaggtggtgccgggcggcaagatccccatcgacggcaaggtggtcagcggtcaatctaactgcgacgagtctctcatcacgggggagagcatgcctgtgtccaaaaaggaagggtccaccgtgattggtggcagtatcaaccagcacggcactctgctgacggaagcaacacacgttggggccgacaccacactctcacagattgtcaagctggtggaagaagcacagacatctaaggcccctattcagaatctggcagacaagatagctggtatctttgtgcctattgtgtgtacgctgtccactatcacgctgctgggctgggtcatcgctggatatgtggacattaaactcattgaagaagactttgtggacaacggagaagtgtcaaagagcgagatgatcttcgagaaggcgttccagtacgccatcacggtgctgagcatcgcctgtccctgtgccctcgggctggccacacccactgctgtcatggtggggacaggggtcggggcactcaacggcattctcatcaagggaggcgagccgctagaaaccacacacaaggtgcgttgcatcgtgtttgacaagactggcacagtaacacacggcgtgccccgagttgcgcgtgtgtccatgtttgtgacagactcggtgtgttctttcgtcaagatgatcgcaatctgtggcactgctgaggccagcagtgaacaccccatcgcttctgctatcgtcaagtatgccaaggagactctagaggcagcggtgctgggcaaaacgacagacttcaaggctgtgccagggtgcggcctcaagtgcaaggcgtccgggatcgaatccctgctgacggggctggacatggacggtgtgaggaaccgccgcaacaagcagggcagtttggtcatccgcatcgactccaagtccagtcagccgtccgacagtctgcaccaggccttgcagattgacgatctggcgggagcagtggcaccggcaacgtacgaagtgctgatcggaaaccgggagtggatgaatcgaaacggtctgacggtgacagaggaaatggatgaggtgatgacagagcatgagaatcagggtcatactgcagttctctgcactgttgatggtgtgattgtttccatgctggcggtagcagacacagtcaagtcggaggcccatgttgccatccatgagctgaagaagttggtgccagagattatcctcctgacgggcgacaacaagaaaacggcacgggccattgctaagcagattggaataaagaaggtgtttgcggaggtgttgccatcccacaaggtgaagaagattcgtcagctgcaggcagagggtcacaaggtggccatggttggagacggagtgaatgattcgccggccctagctcaggctgacgtcggcatcgctataggcactggcactgacgtggctgtggaggctgccgacattgttctcatgaatagcaacctcttggatgttttcgctgccattaaactgtcaagaaaaacagttgaacgcatctatatgaacttcttctttgcctgtctctacaacttacttggcatccccattgctgctggagtgtttgtaccttggggcctgtccctcaaaccctggatggcttccgctgctatggcagcctcctctgtctctgtcgtggtctcgtctctgggtctcaaattgttcaaaaagcccaagatgaaagatctggtaacacaggagtaccacgagtcctacgcgaaggaacagggtctccaaggaggggtcaaggagtccaacaagaagtcctacaacgtgaaacagacggcgggagagaatgttgatgacgatgaaatcgctgtctactgtggg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//
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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