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2025-04-02 17:58:29, GGRNA.v2 : RefSeq release 228 (Jan, 2025)

LOCUS       XM_069247992            1847 bp    mRNA    linear   INV 18-OCT-2024
DEFINITION  PREDICTED: Argopecten irradians uncharacterized protein
            (LOC138307316), mRNA.
ACCESSION   XM_069247992
VERSION     XM_069247992.1
DBLINK      BioProject: PRJNA1171459
KEYWORDS    RefSeq.
SOURCE      Argopecten irradians (bay scallop)
  ORGANISM  Argopecten irradians
            Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
            Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae;
            Argopecten.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091147) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_041381155.1-RS_2024_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/11/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Argopecten irradians"
                     /mol_type="mRNA"
                     /isolate="NY"
                     /isolation_source="New York"
                     /db_xref="taxon:31199"
                     /chromosome="14"
                     /tissue_type="testis"
                     /geo_loc_name="USA: New York, Orient Harbor"
                     /lat_lon="41.137904 N 72.315392 W"
                     /collection_date="2021"
     gene            1..1847
                     /gene="LOC138307316"
                     /note="uncharacterized LOC138307316; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein"
                     /db_xref="GeneID:138307316"
     CDS             367..933
                     /gene="LOC138307316"
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="XP_069104093.1"
                     /db_xref="GeneID:138307316"
                     /translation="
MVVQQMRPSDLRFTHDSVSCRFSDGHTLEDTFKKLLNGDLQHYQLRPLVAMSHMGHWFVVRGNRRLYLYKKLEEIGKIDEVKVVTQNFDDRVFTKQFSSKNMGVSLRIRGNPYIESELRRCINDWRDARTRPSSSASMRIYGSSYSPTYSYSTSAYSPPPQRTVPQARSYTPPPPPPPKQDDSWCTIL"
     polyA_site      1847
                     /gene="LOC138307316"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
tataaacacttcaggctgtgtttgtttgcttaacattatttaaacagcttcacgtaagagatgtttcttattgttttgagaatttaattttatataaagcattttacgcggggaatgctggtttacgaaggaaaaacatctattcttagtttcaaatacgaaaggaaaagatgatatagtaaacgtgtgttcaacaaatagtgtgggatacaaaaggaagagaaactacaaaaattccaagaaaatcctgcagttgttgtgactgcaaacggaaccaaaggactagacactcgattgaacgtttgacgttaaacaggtgtacactgaaagcagacatttgcataaggaactgggaccaaagagacaatggtagttcagcaaatgagaccgtcagatctacgattcacgcacgatagcgtgagttgtagattttctgatggacacacactcgaagatacttttaaaaaactgctgaatggtgatctacagcactaccaattgcgccctttggttgccatgtcccacatgggtcattggtttgtcgttagaggcaaccgacgactttacctctacaaaaaactggaagaaatagggaaaatcgatgaggttaaagttgtgacgcagaattttgacgacagagtgtttacgaaacaattctcgtcgaagaatatgggagtatcgctacgaataaggggaaatccgtacattgaatcggaacttcgtcggtgtattaacgattggagagatgccaggactcgtcccagtagcagtgcttcaatgagaatctatggatctagttatagtccaacctactcctactctacctcagcctatagtccccctccccagaggacggtcccccaggccaggtcctacaccccgcctcctcctccacctcctaaacaagatgattcctggtgtaccattctctgaagtggaatgttgttacgttggttgatgtttattcatgtgaccttgaacgtcggtaaacgtttattcatgtgaccttgaacgtcggtggacgtttattcatgtgaccttgaacgtcggtaaacgtttattcctgtgaccttgaacgttggtggacgtttattcctgtgactttcaacttagtgacaaggtcaactaagtgacaaaactgtctgtttacatatgtatgtccattgtcgatcgtacatatttttcatctatatgtaaataacattatgtgtatatatatgattcaaattgacatacatgatattgatatgttttactgaaacatttattacagcaatatgttacatacttatatgtttatctttttttttttaattttaaacatatgtacatgctattgatatagcagcatgtgaattttggttcagacgcatttttgtttgtttttaatttattgaataatatattgccttccccatagtattatagacacttatcattgatttttttttccaatttgatgacattttatattaccatcttcccagttttgttaagattaggatgtattagccacgtgtattgtgttattttaatttcaatttcatatacatgcacagttcgtatatattttataggtgcaattcgctgttcatatgccaacaatataacattttttattgaaatatatgatccattttatgtaaatacagatatattaatatattaatgataatttatcctattttagtggcacatacagtttatgattattgttaataggtacggacatgtgtaccataaaaacgaaatacattaagtcatattgacatgcattgatttctacgttgatatatcaatactttcatggctttgaaataaattgaagtagaatttacacagtttaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]