2025-04-02 14:42:06, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_067462517 2837 bp mRNA linear VRT 20-AUG-2024 DEFINITION PREDICTED: Anolis sagrei protein argonaute-1-like (LOC137095714), transcript variant X6, mRNA. ACCESSION XM_067462517 VERSION XM_067462517.1 DBLINK BioProject: PRJNA1142516 KEYWORDS RefSeq. SOURCE Anolis sagrei (Brown anole) ORGANISM Anolis sagrei Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_090035) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_037176765.1-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2837 /organism="Anolis sagrei" /mol_type="mRNA" /isolate="rAnoSag1" /db_xref="taxon:38937" /chromosome="Y" /sex="male" /tissue_type="blood, liver" /dev_stage="subadult" /geo_loc_name="USA: Palm Coast, Florida" /lat_lon="29.582251 N 81.214912 W" /collection_date="2019-09-07" /collected_by="Tonia Schwartz" gene 1..2837 /gene="LOC137095714" /note="protein argonaute-1-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins" /db_xref="GeneID:137095714" CDS 175..2523 /gene="LOC137095714" /codon_start=1 /product="protein argonaute-1-like isoform X6" /protein_id="XP_067318618.1" /db_xref="GeneID:137095714" /translation="
MVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWMAIVSWRMLHEALVSGQIPVPLESVQALDIAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVTQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVMGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 217..441 /gene="LOC137095714" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 469..621 /gene="LOC137095714" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 622..984 /gene="LOC137095714" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(778..780,823..825,865..867,877..879,931..933, 952..954,958..960) /gene="LOC137095714" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1117..2394 /gene="LOC137095714" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1528..1530,1540..1542,1576..1587,1594..1596, 1618..1620,1627..1629,1639..1641,1651..1653) /gene="LOC137095714" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1732..1734,1738..1740,1948..1950,2362..2364) /gene="LOC137095714" /note="active site" /db_xref="CDD:240015" ORIGIN
cagttcgtcccgcgtcggccacagcagagtgagggaggccgcggcgggagtggcacccgtgtccggcctcttcggccgccgatagcaccgctctccttaccggcgaggcttgggcggcgcccgcgtggatgggatggaagctggaccctcgggagcagggaggttgtggaatatatggtccaacacttcaaacctcagatctttggagaccggaagccagtatatgatggcaagaagaacatctacactgtcactgccctgccgattgggaatgagagggttgactttgaggtgacaattccaggtgaaggcaaagacaggatattcaaggtttctatcaagtggatggccatcgtgagttggagaatgcttcatgaggccttggtgagtggacagatccccgttcctctggaatctgtccaggcccttgacattgccatgaggcacctagcatccatgaggtacaccccagtgggccgttctttcttctcgcctccggaaggatactatcatccactgggaggaggtcgggaggtctggtttggctttcaccagtctgtcaggcctgctatgtggaagatgatgctcaatattgatgtgtcagcaacagccttttataaggcccagcctgtcatagagttcatgtgtgaagtcctcgatatccggaacattgatgaacagccaaagcccctgactgactctcagagagttcgcttcactaaggagatcaaaggtttgaaagtggaagtgacacactgtgggcagatgaagaggaaataccgtgtgtgtaacgttacccggcggccagctagccaccaaacgttccccctgcagttggagagcggtcagacggtggaatgcacagtcacacaatacttcaagcagaaatacaaccttcagctgaagtaccctcatttgccatgtctgcaagttggtcaagaacagaaacacacatatctgcctctggaggtatgtaacattgtggctggccagcggtgcatcaaaaagttgacggacaatcaaacttccaccatgatcaaagcaacagcaaggtccgctccagacagacaggaggaaatcagccggctgatgaagaatgccagttataacctggacccatacatacaggagtttggcattaaagtgaaggacgatatgacagaggtgatgggacgtgtcttgccagctccaatcttacaatatggaggccggaaccgtgccatcgccacaccaaaccagggggtctgggacatgagaggaaagcagttttacaatggcattgagatcaaagtctgggccattgcctgctttgccccacagaagcagtgcagggaggaagttctgaaaaacttcacagaccaattgcgcaagatatccaaggatgcggggatgccaatccagggtcagccctgtttctgcaaatatgcacaaggagcagacagtgtggagcccatgttccggcatcttaagaacacctactcaggactccagctcatcatcgtcatcctgccggggaaaacaccagtgtatgcggaggtgaagcgcgttggagacacactccttggtatggccactcagtgcgtgcaggtgaagaatgtcgtgaagacgtctccgcagactttgtccaacctctgcctcaagatcaacgtcaagctgggagggatcaacaacatcttggtgccccaccaacgctctgcagtctttcaacagccagttatatttctgggagctgatgtgactcatccgccggcaggagatggaaagaagccctctataacagccgtggtgggaagcatggatgcccatccgagtcgttactgtgcgacggtgcgggtccagcgcccccggcaagaaatcattgaggacctttcatacatggtcagggaactcctcatccagttttacaagtccacccgattcaagcctacccgcatcatattctaccgcgacggagttccagaaggacagctccctcagatccttcactacgagcttctggccatccgtgatgcctgcatcaaactggagaaggactaccagccaggcatcacctacattgttgtacagaaacgtcatcacacccgccttttctgtgctgacaagaatgaaaggattggcaaaagtggaaacatccctgcgggaacaactgtggacacaaacatcactcatccctttgagtttgatttctacctgtgcagtcacgctggcattcagggtacgagcagaccgtctcattactacgttctgtgggatgacaaccggtttacagcagacgagctccaaattctcacctaccagctttgccacacgtacgtccgctgcacccgctctgtctctatcccagcaccagcatattatgcccgcttggtggcctttcgggcacgatatcaccttgtagacaaagagcatgacagcggagaaggcagtcacatatctggccaaagcaatggccgagaccctcaggctcttgccaaggccgtgcaggttcatcaggacactttacgtactatgtactttgcttgaaagctgaaattgtttacctcactccagaaagctttcagatttgtaggagccatacaaaatatttttaaaaataaaataaaggaagaattggaagcaccttggggcatcccatgagaaatcactgcagggcgccaacagcgttggaggcaggaaaccagcaccctccggggcaaatgcaagagagttgctcgcccgaccggatggacacaccttcttcagtatcgcaaaagagactttgttttttgggcgttccaattccctgaccaaacatggccacagaagggatccaacttccaattccaaacggaacaggt
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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