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2025-04-02 18:14:18, GGRNA.v2 : RefSeq release 228 (Jan, 2025)

LOCUS       XM_067219068            5838 bp    mRNA    linear   INV 12-AUG-2024
DEFINITION  Plasmodium brasilianum uncharacterized protein (MKS88_005775),
            partial mRNA.
ACCESSION   XM_067219068
VERSION     XM_067219068.1
DBLINK      BioProject: PRJNA1144980
            BioSample: SAMN26224112
KEYWORDS    RefSeq.
SOURCE      Plasmodium brasilianum
  ORGANISM  Plasmodium brasilianum
            Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida;
            Plasmodiidae; Plasmodium; Plasmodium (Plasmodium).
REFERENCE   1  (bases 1 to 5838)
  AUTHORS   Bajic,M. and Ravishankar,S.
  TITLE     The First Complete Genome of the Simian Malaria Parasite Plasmodium
            brasilianum
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5838)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-AUG-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 5838)
  AUTHORS   Bajic,M. and Ravishankar,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JUN-2022) Division of Parasitic Diseases and Malaria,
            Centers for Disease Control and Prevention, 1600 Clifton Rd,
            Atlanta, GA 303333, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_090127).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..5838
                     /organism="Plasmodium brasilianum"
                     /mol_type="mRNA"
                     /strain="Bolivian I"
                     /db_xref="taxon:5824"
                     /chromosome="14"
                     /tissue_type="blood"
                     /dev_stage="schizont"
                     /lab_host="Macaca mulatta"
     gene            <1..>5838
                     /locus_tag="MKS88_005775"
                     /db_xref="GeneID:92373862"
     CDS             1..5838
                     /locus_tag="MKS88_005775"
                     /note="conserved Plasmodium protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="XP_067070981.1"
                     /db_xref="GeneID:92373862"
                     /translation="
MKSSPLKKLKLGEGEYKIVNEYEQNRRVEKVGIKEYKEKRDVESHSSRYNWLYDKINGLCKNLNVFKKNGQRERRKEREVGAVGVVDTEVDVYANVDVDIHMDVEQEEKRKIKRKGIKRSYDDYSKVNKREKEKISTEAKTYRQSFEHLSLLQSLLCIHKFYSRDVNGKCATIPVKDKEYERRDINANNNKDVDRYDDRNSSMYGIKAQSKEQKWWENDRKKYKEKEFIEEKFKVKENNLTYNNIHCDNIQYGNFEDIFVDLVNEKCGFFYIFNIVFFTNLKNYYYFVDIVNILNYMGNNKSAVHSDEKNKDILIYEQVALYIEKFYNIFMYEKSKRSISFLPNQFYDKIKCTKFVSSIQNNSYYYDLEEIKKKLEFLKNEKSYEEILFMSMYECNKRIYCQLSKIPELFQDISEISKYNKNNYEQSEIVNSEYSDQRLNGLCKKKTFSLYSENHFAASLTYDDLKNGGNDSSSNDNSAKDNRVNDTRDNDNSASDNRDNDNSASDNRDNDNSAIDSAPCRVPLKNGRSSMHSLDSGKFHFGRNQLSKHSAKLFGQQVVGKRKSIVSNGVPNNNNSNITGGNLSNEKGLYIKNFLINLFKPSNTRGSEDNQKTVICSGNENGIMNFVEKKGFPEHTLRKDISFYSKDRSGMNRNVKKDMNNPMNNPMNNPMNNPVNNPMNNPMNNPMNNPMNNPVNNPMNNPMNNPMNNPMNNPMNNPMNNPVNNPVNNPVNNPVNKARDSHATEAGVLPPCVEKAKEENGQPTDLSETKLCECPLEENSKEEKLNSGHELTRFENNDALVNINIALVESTINGLANKIIENDKQVSNELIKLKSEKDDQGEQVNEENNFSISNDNTNDRLITDRPSGNDYLLNKSEEIYQNYCKDEWEKKCTNKMEEEQKFVVGDEPWEKLGGKLVEKLGEVLSNEYEEPFESNSGGKSMDNYEGICDASLVDRSVVYNSAECKKVEIIDLKKVEEEYRESILEKKDDSSEGVLNGYKEGYKELDVKKLEHVKEFKQYDNTPDANDEIYKIDGIDRITQKPNESNVHLKCEIELQEGHSKNYELKEVEVTMSNQLCDMQDDADALKDTHSVKNQLNGEESCELSVEEGVDMNKSGKEGENVEEAANPYESEPNKKESIINELNCSKSKNNINIVDKPSNIEPENVESGGNKLRADIPSGVDLNEVDENEPRAVDQNESSEGDQNESIETDLNESSEGNQNESIETDLNESSEGNQNESIETDANESSEGDQNESIETDANESSEVDQNESIETDANESSEVDQNESIETDANESSEVDQNGSIETDANESSETDEGKLSNGRKGEQSEDDKYEHENFTREKYEHSEGSYEDVDYREKAQFLDIKKKKAEVEKIDIKYSPTLEDNTSVLVKESYYSEIDDEYIIKLLKYNKENNDKANYNRELLKNILGCSKKCTLENHTEEKRVFIKKVRKLCNLIKKKKLNDKYKKILEKKNFFKCGKLQRAYKIFLTVIFSIEKEIKELRKELNGMRNFIFINSGIEYYLNENNISFFRKSRAYRNILNNHLIERSKFGGYFCTNNDVINGDINGGINGDIDGDINGDINGDINGNSNCNYNRSYANSDGNSDSNISIVSNFFLKSNFPSKGKRKKKYISYIPLENYKILFLCLKDIFEEKNVEDKLKRISYYIEIDDYIPTYCKRFYDKFKIKEKYLYNIQTLFNSCVPSVECVNMIISCLNYNYSKIYKKKSIFKYELNSLYLSTLPSVYCCYVQIIKHIEFLKLKETSQKIIKNNKIFENLLNHLSSYILDESYFIIPFFTSYGKFLIIIKTDKNYNTETTMEILKNKSSFTYDVIINSFVYPNDTCFQAIIHFSHVFINTLRNFFKTRNSDDNIPEITFANIPHIEKQQLIYHEIESSKNRNEITVNVIFLIESFFNNTKKMKVPMEFNQGLRFLYVVRLLELYNGKN"
     misc_feature    <2839..3795
                     /locus_tag="MKS88_005775"
                     /note="Ring-infected erythrocyte surface antigen;
                     Provisional; Region: PTZ00341"
                     /db_xref="CDD:173534"
     misc_feature    <3352..>3993
                     /locus_tag="MKS88_005775"
                     /note="Midasin, AAA ATPase with vWA domain, involved in
                     ribosome maturation [Translation, ribosomal structure and
                     biogenesis]; Region: MDN1; COG5271"
                     /db_xref="CDD:444083"
ORIGIN      
atgaaaagtagtcccttgaaaaaattaaaactgggtgaaggtgagtacaaaatagttaatgagtatgaacaaaacagaagagtggaaaaagtaggcataaaagaatataaggaaaagagagatgtagaaagtcatagcagcagatataattggctatatgacaaaataaatggcttatgtaaaaatttgaacgtatttaagaaaaatggacaaagggaaaggcgcaaagaaagagaagtaggtgcagtaggcgtagtagatacagaagtagatgtttatgcgaatgtggacgtggatatacatatggatgtagaacaggaagaaaagagaaagataaaaagaaaaggaataaaaagatcttacgatgattattcaaaagttaataagagggagaaggagaagattagcacagaagcaaaaacttatcgccaatcctttgaacatttgtccttattacaatctttattatgtattcataaattttactcaagggatgttaatggtaaatgtgcaactattccggtaaaggataaagaatacgaaaggagggatataaacgcaaataataataaagatgtcgatcgttatgatgataggaacagtagtatgtacggaataaaggctcagagtaaagaacagaaatggtgggaaaacgacaggaaaaaatataaagagaaagaattcattgaagaaaaatttaaagtgaaagaaaataatttaacatacaacaatatacattgcgacaatatacagtatggaaattttgaggacatttttgtcgatctagtaaatgaaaagtgtggttttttttatatattcaatatagtattttttacaaatttaaaaaattattattatttcgtagacatcgtcaatatattaaattatatgggtaataacaaaagtgctgtccattcggatgaaaagaataaggacatattaatatatgaacaagttgccttatatatagaaaaattttataatatttttatgtacgaaaagagtaaaagatcgattagttttttaccaaaccaattttatgataaaataaaatgtaccaagtttgtatcatctatacaaaataacagctattattatgatttagaagaaataaaaaaaaaattagaatttttaaaaaatgaaaaatcatatgaagaaattctatttatgtccatgtatgaatgtaataaaagaatatattgtcaattaagtaaaataccggaattatttcaagacatatcagaaattagtaaatataacaaaaataattacgaacaaagtgaaattgtcaattctgagtacagtgatcagcggttaaatggtttatgtaaaaagaaaaccttctccttgtatagcgaaaatcactttgccgcttcgttaacgtacgacgatttgaagaacggtggtaatgatagtagttctaacgataatagtgctaaggataatagggttaatgatactagggataatgataatagtgctagtgataatagggataatgataatagcgctagtgataatagggataatgataatagtgctattgatagtgctccatgtagagtaccactgaaaaatggtcgatcttcaatgcacagtctcgatagtggtaagtttcattttggaagaaaccaactgagtaaacacagtgccaagttgttcggtcaacaagtagtaggaaaacgtaaatctattgtcagtaatggagttccaaataacaataattcgaacataactggtggtaatttgtcgaatgaaaaggggttatacataaaaaattttttaataaacttgtttaaaccgtcaaatactagaggtagtgaagataatcagaaaactgtaatttgtagtggaaatgaaaatggaataatgaattttgtagagaaaaaaggctttcccgaacatacgcttagaaaggatattagtttctattcgaaggataggagtggcatgaacaggaacgtgaaaaaggacatgaacaacccaatgaacaacccaatgaacaacccaatgaacaacccagtgaacaacccaatgaacaacccaatgaacaacccaatgaacaacccaatgaacaacccagtgaacaacccaatgaacaacccaatgaacaacccaatgaacaacccaatgaacaacccaatgaacaacccaatgaacaacccagtgaacaacccagtgaacaacccagtgaacaacccagtgaacaaggcacgagatagtcatgctactgaagcaggagttcttcccccttgtgtggaaaaggcgaaagaagaaaatggtcaacccacagatttgtctgaaacgaaattgtgtgaatgccctttagaagagaatagtaaggaagaaaaattaaatagcgggcatgagctaactagatttgaaaataatgatgcattagtaaatatcaacattgcacttgtcgagtctactatcaacggattagcaaataaaattatagagaatgataagcaagtttctaatgaattaataaagctgaaaagcgaaaaagatgatcaaggtgagcaagtaaacgaagaaaataatttttccataagtaatgataacacgaatgatagattaataactgatcgaccaagtggaaatgattatttacttaacaagtcggaggagatttaccaaaattattgcaaagatgaatgggaaaagaaatgcacaaataaaatggaggaagagcagaagtttgtagttggggatgagccgtgggaaaaactgggtggaaaattagttgaaaaattgggagaagtactgagtaatgaatatgaggagccttttgaatctaatagtgggggtaaatcgatggacaattatgaaggtatttgtgatgctagtcttgtggacagatcagtagtttataattcagcagagtgtaaaaaggtagaaataattgacctaaaaaaagtggaagaggaatacagagaaagtatattagaaaaaaaggatgactcatctgaaggggtattgaatggatacaaggagggatataaggaattagatgtaaaaaagttagaacatgtgaaggaatttaaacagtatgataacactcctgatgcaaatgacgaaatttataaaattgacggaattgaccgaattacacaaaagccaaatgagtctaatgtccatcttaaatgtgaaattgaactacaggaaggtcattcaaaaaattacgaattaaaagaagtggaggtaacaatgagtaatcagttatgcgacatgcaagatgatgcagacgcattgaaagatactcattcggtgaaaaaccaactaaatggcgaagaaagttgtgagttgtcggttgaagagggggtagatatgaacaagtcaggtaaagagggggaaaacgttgaggaggcagctaatccatatgaaagtgaaccaaataaaaaggagtcaattatcaatgaattgaattgtagcaaatctaaaaataatattaacattgtcgataaaccaagcaatattgagcctgaaaatgttgaatcgggagggaataagttacgtgcggatattccgagtggagttgacttgaatgaagtggatgaaaacgaaccacgtgcagtagatcagaacgaatcgagtgaaggagatcaaaatgaatccattgagacagatttaaacgaatcgagtgaaggaaatcaaaatgaatctattgagacagatttaaacgaatcgagtgaaggaaatcaaaatgaatctattgagacagatgcaaacgaatcgagtgaaggagatcaaaatgaatccattgagacagatgcaaacgaatccagtgaagtagatcaaaatgaatcaattgagacagatgcaaacgaatccagtgaagtagatcaaaatgaatcaattgagacagatgcaaacgaatccagtgaagtagatcaaaatggatccattgagacagatgcaaacgaatcgagtgaaacggatgaaggcaagttgagcaacggacgcaaaggtgagcaaagtgaagatgataaatatgaacatgaaaacttcacgcgggaaaaatacgaacactctgaagggtcatacgaagatgtggactacagagaaaaagcgcaatttcttgacataaagaaaaaaaaggctgaagtagaaaaaatagacataaaatattctcccaccttagaagataacacatctgttttagtaaaggaatcatattatagcgaaatagatgatgagtatattattaaattattaaaatataataaagaaaataatgataaagcaaattacaatagagaattattaaagaatatactaggatgtagtaaaaaatgtacacttgaaaatcatacagaagaaaaaagggtatttattaagaaagtaagaaaattatgtaatttaataaaaaagaaaaaattgaatgataaatataaaaaaatactagaaaaaaaaaatttttttaaatgtggcaagttacagagagcatataaaatatttctcacagtaatattttccatagaaaaagaaattaaagaattgagaaaagaactaaatggaatgcgtaattttatatttataaattcagggattgaatattatttaaatgaaaacaatatatccttttttagaaaaagtagggcttataggaatatcctgaacaaccaccttatcgagcgtagtaaatttggtggttatttttgcactaacaatgacgttattaatggagatataaatggaggtataaatggagatatagatggagatataaatggagatataaatggagatataaatggaaatagtaattgtaattataatcgtagttatgctaacagtgatggaaatagcgacagcaacatcagcatagttagcaatttttttttaaaaagcaattttccgagtaagggaaaaagaaagaaaaaatatatttcatatatacctttagaaaattataaaatattatttctatgtttaaaagacatatttgaagaaaagaatgtagaagacaaactaaaacgcatttcatactacattgaaatagacgactatatacctacatattgcaaaagattttatgataaattcaaaataaaagagaaatatttatataatatacaaacattatttaattcttgtgtaccatctgttgaatgcgtaaacatgataatatcttgtcttaattataattattccaaaatttataaaaagaaatcaattttcaaatatgaactaaacagtctatacttatctaccctaccgtcggtatattgttgttatgtacaaataataaaacatatagaattcttaaaattaaaagaaacaagtcagaaaataattaaaaataataagatctttgagaatttattaaatcatctttcatcttatatattagatgagtcttattttattattcccttttttacatcctatggaaaatttttaataataattaaaacagacaaaaattataatacagaaactacaatggaaattttaaaaaacaaaagttcattcacctatgatgtaatcattaacagttttgtatatcctaatgatacatgttttcaagcaattattcatttttcacatgtttttataaacaccttaaggaatttttttaaaacccgaaattcggatgacaatattcctgaaataacttttgcaaatattcctcatattgagaagcagcaacttatatatcatgaaatagaatctagcaagaacagaaatgagattactgttaatgttattttcttgatagagtccttcttcaacaacacaaagaaaatgaaggtacctatggaatttaatcaagggttgagatttttatatgttgttagactgcttgagctctataacggaaaaaattaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]