2025-04-02 18:14:18, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_067219068 5838 bp mRNA linear INV 12-AUG-2024 DEFINITION Plasmodium brasilianum uncharacterized protein (MKS88_005775), partial mRNA. ACCESSION XM_067219068 VERSION XM_067219068.1 DBLINK BioProject: PRJNA1144980 BioSample: SAMN26224112 KEYWORDS RefSeq. SOURCE Plasmodium brasilianum ORGANISM Plasmodium brasilianum Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Plasmodium). REFERENCE 1 (bases 1 to 5838) AUTHORS Bajic,M. and Ravishankar,S. TITLE The First Complete Genome of the Simian Malaria Parasite Plasmodium brasilianum JOURNAL Unpublished REFERENCE 2 (bases 1 to 5838) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-AUG-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5838) AUTHORS Bajic,M. and Ravishankar,S. TITLE Direct Submission JOURNAL Submitted (03-JUN-2022) Division of Parasitic Diseases and Malaria, Centers for Disease Control and Prevention, 1600 Clifton Rd, Atlanta, GA 303333, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_090127). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..5838 /organism="Plasmodium brasilianum" /mol_type="mRNA" /strain="Bolivian I" /db_xref="taxon:5824" /chromosome="14" /tissue_type="blood" /dev_stage="schizont" /lab_host="Macaca mulatta" gene <1..>5838 /locus_tag="MKS88_005775" /db_xref="GeneID:92373862" CDS 1..5838 /locus_tag="MKS88_005775" /note="conserved Plasmodium protein" /codon_start=1 /product="hypothetical protein" /protein_id="XP_067070981.1" /db_xref="GeneID:92373862" /translation="
MKSSPLKKLKLGEGEYKIVNEYEQNRRVEKVGIKEYKEKRDVESHSSRYNWLYDKINGLCKNLNVFKKNGQRERRKEREVGAVGVVDTEVDVYANVDVDIHMDVEQEEKRKIKRKGIKRSYDDYSKVNKREKEKISTEAKTYRQSFEHLSLLQSLLCIHKFYSRDVNGKCATIPVKDKEYERRDINANNNKDVDRYDDRNSSMYGIKAQSKEQKWWENDRKKYKEKEFIEEKFKVKENNLTYNNIHCDNIQYGNFEDIFVDLVNEKCGFFYIFNIVFFTNLKNYYYFVDIVNILNYMGNNKSAVHSDEKNKDILIYEQVALYIEKFYNIFMYEKSKRSISFLPNQFYDKIKCTKFVSSIQNNSYYYDLEEIKKKLEFLKNEKSYEEILFMSMYECNKRIYCQLSKIPELFQDISEISKYNKNNYEQSEIVNSEYSDQRLNGLCKKKTFSLYSENHFAASLTYDDLKNGGNDSSSNDNSAKDNRVNDTRDNDNSASDNRDNDNSASDNRDNDNSAIDSAPCRVPLKNGRSSMHSLDSGKFHFGRNQLSKHSAKLFGQQVVGKRKSIVSNGVPNNNNSNITGGNLSNEKGLYIKNFLINLFKPSNTRGSEDNQKTVICSGNENGIMNFVEKKGFPEHTLRKDISFYSKDRSGMNRNVKKDMNNPMNNPMNNPMNNPVNNPMNNPMNNPMNNPMNNPVNNPMNNPMNNPMNNPMNNPMNNPMNNPVNNPVNNPVNNPVNKARDSHATEAGVLPPCVEKAKEENGQPTDLSETKLCECPLEENSKEEKLNSGHELTRFENNDALVNINIALVESTINGLANKIIENDKQVSNELIKLKSEKDDQGEQVNEENNFSISNDNTNDRLITDRPSGNDYLLNKSEEIYQNYCKDEWEKKCTNKMEEEQKFVVGDEPWEKLGGKLVEKLGEVLSNEYEEPFESNSGGKSMDNYEGICDASLVDRSVVYNSAECKKVEIIDLKKVEEEYRESILEKKDDSSEGVLNGYKEGYKELDVKKLEHVKEFKQYDNTPDANDEIYKIDGIDRITQKPNESNVHLKCEIELQEGHSKNYELKEVEVTMSNQLCDMQDDADALKDTHSVKNQLNGEESCELSVEEGVDMNKSGKEGENVEEAANPYESEPNKKESIINELNCSKSKNNINIVDKPSNIEPENVESGGNKLRADIPSGVDLNEVDENEPRAVDQNESSEGDQNESIETDLNESSEGNQNESIETDLNESSEGNQNESIETDANESSEGDQNESIETDANESSEVDQNESIETDANESSEVDQNESIETDANESSEVDQNGSIETDANESSETDEGKLSNGRKGEQSEDDKYEHENFTREKYEHSEGSYEDVDYREKAQFLDIKKKKAEVEKIDIKYSPTLEDNTSVLVKESYYSEIDDEYIIKLLKYNKENNDKANYNRELLKNILGCSKKCTLENHTEEKRVFIKKVRKLCNLIKKKKLNDKYKKILEKKNFFKCGKLQRAYKIFLTVIFSIEKEIKELRKELNGMRNFIFINSGIEYYLNENNISFFRKSRAYRNILNNHLIERSKFGGYFCTNNDVINGDINGGINGDIDGDINGDINGDINGNSNCNYNRSYANSDGNSDSNISIVSNFFLKSNFPSKGKRKKKYISYIPLENYKILFLCLKDIFEEKNVEDKLKRISYYIEIDDYIPTYCKRFYDKFKIKEKYLYNIQTLFNSCVPSVECVNMIISCLNYNYSKIYKKKSIFKYELNSLYLSTLPSVYCCYVQIIKHIEFLKLKETSQKIIKNNKIFENLLNHLSSYILDESYFIIPFFTSYGKFLIIIKTDKNYNTETTMEILKNKSSFTYDVIINSFVYPNDTCFQAIIHFSHVFINTLRNFFKTRNSDDNIPEITFANIPHIEKQQLIYHEIESSKNRNEITVNVIFLIESFFNNTKKMKVPMEFNQGLRFLYVVRLLELYNGKN"
misc_feature <2839..3795 /locus_tag="MKS88_005775" /note="Ring-infected erythrocyte surface antigen; Provisional; Region: PTZ00341" /db_xref="CDD:173534" misc_feature <3352..>3993 /locus_tag="MKS88_005775" /note="Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]; Region: MDN1; COG5271" /db_xref="CDD:444083" ORIGIN
atgaaaagtagtcccttgaaaaaattaaaactgggtgaaggtgagtacaaaatagttaatgagtatgaacaaaacagaagagtggaaaaagtaggcataaaagaatataaggaaaagagagatgtagaaagtcatagcagcagatataattggctatatgacaaaataaatggcttatgtaaaaatttgaacgtatttaagaaaaatggacaaagggaaaggcgcaaagaaagagaagtaggtgcagtaggcgtagtagatacagaagtagatgtttatgcgaatgtggacgtggatatacatatggatgtagaacaggaagaaaagagaaagataaaaagaaaaggaataaaaagatcttacgatgattattcaaaagttaataagagggagaaggagaagattagcacagaagcaaaaacttatcgccaatcctttgaacatttgtccttattacaatctttattatgtattcataaattttactcaagggatgttaatggtaaatgtgcaactattccggtaaaggataaagaatacgaaaggagggatataaacgcaaataataataaagatgtcgatcgttatgatgataggaacagtagtatgtacggaataaaggctcagagtaaagaacagaaatggtgggaaaacgacaggaaaaaatataaagagaaagaattcattgaagaaaaatttaaagtgaaagaaaataatttaacatacaacaatatacattgcgacaatatacagtatggaaattttgaggacatttttgtcgatctagtaaatgaaaagtgtggttttttttatatattcaatatagtattttttacaaatttaaaaaattattattatttcgtagacatcgtcaatatattaaattatatgggtaataacaaaagtgctgtccattcggatgaaaagaataaggacatattaatatatgaacaagttgccttatatatagaaaaattttataatatttttatgtacgaaaagagtaaaagatcgattagttttttaccaaaccaattttatgataaaataaaatgtaccaagtttgtatcatctatacaaaataacagctattattatgatttagaagaaataaaaaaaaaattagaatttttaaaaaatgaaaaatcatatgaagaaattctatttatgtccatgtatgaatgtaataaaagaatatattgtcaattaagtaaaataccggaattatttcaagacatatcagaaattagtaaatataacaaaaataattacgaacaaagtgaaattgtcaattctgagtacagtgatcagcggttaaatggtttatgtaaaaagaaaaccttctccttgtatagcgaaaatcactttgccgcttcgttaacgtacgacgatttgaagaacggtggtaatgatagtagttctaacgataatagtgctaaggataatagggttaatgatactagggataatgataatagtgctagtgataatagggataatgataatagcgctagtgataatagggataatgataatagtgctattgatagtgctccatgtagagtaccactgaaaaatggtcgatcttcaatgcacagtctcgatagtggtaagtttcattttggaagaaaccaactgagtaaacacagtgccaagttgttcggtcaacaagtagtaggaaaacgtaaatctattgtcagtaatggagttccaaataacaataattcgaacataactggtggtaatttgtcgaatgaaaaggggttatacataaaaaattttttaataaacttgtttaaaccgtcaaatactagaggtagtgaagataatcagaaaactgtaatttgtagtggaaatgaaaatggaataatgaattttgtagagaaaaaaggctttcccgaacatacgcttagaaaggatattagtttctattcgaaggataggagtggcatgaacaggaacgtgaaaaaggacatgaacaacccaatgaacaacccaatgaacaacccaatgaacaacccagtgaacaacccaatgaacaacccaatgaacaacccaatgaacaacccaatgaacaacccagtgaacaacccaatgaacaacccaatgaacaacccaatgaacaacccaatgaacaacccaatgaacaacccaatgaacaacccagtgaacaacccagtgaacaacccagtgaacaacccagtgaacaaggcacgagatagtcatgctactgaagcaggagttcttcccccttgtgtggaaaaggcgaaagaagaaaatggtcaacccacagatttgtctgaaacgaaattgtgtgaatgccctttagaagagaatagtaaggaagaaaaattaaatagcgggcatgagctaactagatttgaaaataatgatgcattagtaaatatcaacattgcacttgtcgagtctactatcaacggattagcaaataaaattatagagaatgataagcaagtttctaatgaattaataaagctgaaaagcgaaaaagatgatcaaggtgagcaagtaaacgaagaaaataatttttccataagtaatgataacacgaatgatagattaataactgatcgaccaagtggaaatgattatttacttaacaagtcggaggagatttaccaaaattattgcaaagatgaatgggaaaagaaatgcacaaataaaatggaggaagagcagaagtttgtagttggggatgagccgtgggaaaaactgggtggaaaattagttgaaaaattgggagaagtactgagtaatgaatatgaggagccttttgaatctaatagtgggggtaaatcgatggacaattatgaaggtatttgtgatgctagtcttgtggacagatcagtagtttataattcagcagagtgtaaaaaggtagaaataattgacctaaaaaaagtggaagaggaatacagagaaagtatattagaaaaaaaggatgactcatctgaaggggtattgaatggatacaaggagggatataaggaattagatgtaaaaaagttagaacatgtgaaggaatttaaacagtatgataacactcctgatgcaaatgacgaaatttataaaattgacggaattgaccgaattacacaaaagccaaatgagtctaatgtccatcttaaatgtgaaattgaactacaggaaggtcattcaaaaaattacgaattaaaagaagtggaggtaacaatgagtaatcagttatgcgacatgcaagatgatgcagacgcattgaaagatactcattcggtgaaaaaccaactaaatggcgaagaaagttgtgagttgtcggttgaagagggggtagatatgaacaagtcaggtaaagagggggaaaacgttgaggaggcagctaatccatatgaaagtgaaccaaataaaaaggagtcaattatcaatgaattgaattgtagcaaatctaaaaataatattaacattgtcgataaaccaagcaatattgagcctgaaaatgttgaatcgggagggaataagttacgtgcggatattccgagtggagttgacttgaatgaagtggatgaaaacgaaccacgtgcagtagatcagaacgaatcgagtgaaggagatcaaaatgaatccattgagacagatttaaacgaatcgagtgaaggaaatcaaaatgaatctattgagacagatttaaacgaatcgagtgaaggaaatcaaaatgaatctattgagacagatgcaaacgaatcgagtgaaggagatcaaaatgaatccattgagacagatgcaaacgaatccagtgaagtagatcaaaatgaatcaattgagacagatgcaaacgaatccagtgaagtagatcaaaatgaatcaattgagacagatgcaaacgaatccagtgaagtagatcaaaatggatccattgagacagatgcaaacgaatcgagtgaaacggatgaaggcaagttgagcaacggacgcaaaggtgagcaaagtgaagatgataaatatgaacatgaaaacttcacgcgggaaaaatacgaacactctgaagggtcatacgaagatgtggactacagagaaaaagcgcaatttcttgacataaagaaaaaaaaggctgaagtagaaaaaatagacataaaatattctcccaccttagaagataacacatctgttttagtaaaggaatcatattatagcgaaatagatgatgagtatattattaaattattaaaatataataaagaaaataatgataaagcaaattacaatagagaattattaaagaatatactaggatgtagtaaaaaatgtacacttgaaaatcatacagaagaaaaaagggtatttattaagaaagtaagaaaattatgtaatttaataaaaaagaaaaaattgaatgataaatataaaaaaatactagaaaaaaaaaatttttttaaatgtggcaagttacagagagcatataaaatatttctcacagtaatattttccatagaaaaagaaattaaagaattgagaaaagaactaaatggaatgcgtaattttatatttataaattcagggattgaatattatttaaatgaaaacaatatatccttttttagaaaaagtagggcttataggaatatcctgaacaaccaccttatcgagcgtagtaaatttggtggttatttttgcactaacaatgacgttattaatggagatataaatggaggtataaatggagatatagatggagatataaatggagatataaatggagatataaatggaaatagtaattgtaattataatcgtagttatgctaacagtgatggaaatagcgacagcaacatcagcatagttagcaatttttttttaaaaagcaattttccgagtaagggaaaaagaaagaaaaaatatatttcatatatacctttagaaaattataaaatattatttctatgtttaaaagacatatttgaagaaaagaatgtagaagacaaactaaaacgcatttcatactacattgaaatagacgactatatacctacatattgcaaaagattttatgataaattcaaaataaaagagaaatatttatataatatacaaacattatttaattcttgtgtaccatctgttgaatgcgtaaacatgataatatcttgtcttaattataattattccaaaatttataaaaagaaatcaattttcaaatatgaactaaacagtctatacttatctaccctaccgtcggtatattgttgttatgtacaaataataaaacatatagaattcttaaaattaaaagaaacaagtcagaaaataattaaaaataataagatctttgagaatttattaaatcatctttcatcttatatattagatgagtcttattttattattcccttttttacatcctatggaaaatttttaataataattaaaacagacaaaaattataatacagaaactacaatggaaattttaaaaaacaaaagttcattcacctatgatgtaatcattaacagttttgtatatcctaatgatacatgttttcaagcaattattcatttttcacatgtttttataaacaccttaaggaatttttttaaaacccgaaattcggatgacaatattcctgaaataacttttgcaaatattcctcatattgagaagcagcaacttatatatcatgaaatagaatctagcaagaacagaaatgagattactgttaatgttattttcttgatagagtccttcttcaacaacacaaagaaaatgaaggtacctatggaatttaatcaagggttgagatttttatatgttgttagactgcttgagctctataacggaaaaaattaa
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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