LOCUS       XM_066683454            1929 bp    mRNA    linear   VRT 22-JUL-2024
DEFINITION  PREDICTED: Hoplias malabaricus vimentin (vim), mRNA.
ACCESSION   XM_066683454
VERSION     XM_066683454.1
DBLINK      BioProject: PRJNA1136869
KEYWORDS    RefSeq.
SOURCE      Hoplias malabaricus (trahira)
  ORGANISM  Hoplias malabaricus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Characiformes; Characoidei; Erythrinidae; Hoplias.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089809) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_029633855.1-RS_2024_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/19/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1929
                     /organism="Hoplias malabaricus"
                     /mol_type="mRNA"
                     /isolate="fHopMal1"
                     /db_xref="taxon:27720"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Brazil: Represa do Rio Monjolinho - Sao
                     Carlos, State of Sao Paulo"
                     /lat_lon="21.985889 S 47.880722 W"
                     /collection_date="2021-04-21"
                     /collected_by="Marcelo de Bello Cioffi"
     gene            1..1929
                     /gene="vim"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 20 Proteins"
                     /db_xref="GeneID:136708712"
     CDS             160..1527
                     /gene="vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_066539551.1"
                     /db_xref="GeneID:136708712"
                     /translation="

MSSRSSGRQSSSYSRMFGGERSTAARSSSLSAARISGARLSSAPTSAAFSSYSYGGGGARVRVAHWPRLSSDSLDFSLSDAINSEFKANRTNEKAEMQHLNDRFASYIEKVRFLEQQNKGLVLELEQLRGKGASRLGDLYEHEMRELRHKVDQLSGEKANVEVQRDNLGDDIQRLREKLQEEIIQREDAENNLQSFRQDVDNASLARLDLERKVESLQEEIIFLKKLHDEEIAELQAQIHDQHLQIDMDVAKPDLTTALRDVRLQYETLATKNIQEAEEWYKSKFADLSEAAARSNEAIRQAKQEANEYRRQIQALTCEVDALKGTNESLERQMRELEDNFGMESSGYQDTIARLEDDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPMPNISSFNLREALVETRPMIENLSKKVVIKTIETRDGHVINESTQRHEELE"

     misc_feature    433..1359
                     /gene="vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
ORIGIN      

aagccaaagttcggacggttctgctgggaaaactctcactaactcatcacggctatctaggcgttcacgtattcactaaacaaaactcccactgaaggctgaaggaagggagcaactctctggtttcaagtccaggagcaggagctcactctgtgcagaatgtccagcagaagctccggccgccagtcctcttcctacagcaggatgttcggcggggagcgctctaccgcggcacgctcatcctcgctgtccgcggcgcgcatctccggagctcgactgagctccgcgcctacctccgccgctttctcctcttactcctacggcggaggaggcgcgagggtacgcgtcgcgcactggccgcggctctcctctgactcgctggacttctccctgtccgacgccatcaactccgagttcaaggccaaccgcaccaacgagaaagccgagatgcagcacctgaacgaccgcttcgccagctacatagagaaggtgcgcttcctcgagcagcagaacaagggcctcgtcctggagctcgagcaactgcgcggcaaaggcgcgagccgcctgggggacctctatgagcacgagatgagagaactacgccacaaagtggaccagctgagcggagagaaggccaatgtggaggtccagagagacaacctcggagacgacatccagcgcctgagagagaaactccaagaagagatcattcagagggaagatgctgaaaataacctccaaagctttaggcaggatgtggataacgcttccctggctcgtctagaccttgagcggaaggtggagtccctgcaggaggagatcatttttctgaagaagcttcatgatgaggagattgctgagctccaggcccagatccatgaccagcatttgcagattgatatggacgtggccaagcctgatctgacaactgccctgcgggatgtccgcctgcagtacgaaactctggctaccaagaacatccaggaggcggaggagtggtacaaatccaagttcgctgatttgtcagaggctgctgcccgtagcaatgaagcaatacgtcaggccaagcaggaggctaatgaataccgccgccagatccaggctctgacctgtgaggtggatgctcttaagggcactaatgagtctctggagcgccagatgagagagctggaagataattttggcatggaatcatctggttaccaagacacaatcgcacgtctggaagatgacatccacaacatgaaggatgagatggctcgccacctgcgcgagtaccaggacctgctcaatgtcaaaatggctctggacattgagattgcgacctacaggaaactgctggaaggagaagaaagcagaattaccacaccaatgcctaacatctcttcctttaatctgagagaagctttggtagaaaccagaccaatgattgaaaacctttctaagaaagtggtgattaagactatagaaacaagagatggacacgtaattaacgagtccactcagcgtcatgaagaactggaataaactgcatgtgaaccctgtgaagaacaggagcagtagggcactgaggaggagtgcattgtagtgggatgccatatagaatgtggagtatttttgttgtttctgtgagagtaaaacaaacaaaaacagctttaaagtgccttcttgccataatagaaagacctgcagacagagttgtgttgcagcagaatagacactgtaggccaatgagaggaccagctttaccagtattcttgtttaccacatcttccttagtttaaactgtacaagacaacagcaataacctgagtgactgcttttctgttttgtatttgttactgcaaaaaattgaccaaatctagaggaatgtgtaagcaataaaaacaccaaactgtcactgctttcactaagtcaataaaccttcaa

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