LOCUS       XM_065651049            1260 bp    mRNA    linear   VRT 07-JUN-2024
DEFINITION  PREDICTED: Caloenas nicobarica homeobox B8 (HOXB8), transcript
            variant X1, mRNA.
ACCESSION   XM_065651049
VERSION     XM_065651049.1
DBLINK      BioProject: PRJNA1103788
KEYWORDS    RefSeq.
SOURCE      Caloenas nicobarica (Nicobar pigeon)
  ORGANISM  Caloenas nicobarica
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae;
            Columbiformes; Columbidae; Caloenas.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_088268) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036013445.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/05/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Caloenas nicobarica"
                     /mol_type="mRNA"
                     /isolate="bCalNic1"
                     /db_xref="taxon:187106"
                     /chromosome="24"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="juvenile"
                     /geo_loc_name="USA: Bronx Zoo, New York"
                     /lat_lon="40.8501 N 73.8767 W"
                     /collection_date="2023-05-05"
                     /collected_by="Charles Alex"
     gene            1..1260
                     /gene="HOXB8"
                     /note="homeobox B8; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 16 Proteins"
                     /db_xref="GeneID:135998022"
     CDS             1..726
                     /gene="HOXB8"
                     /codon_start=1
                     /product="homeobox protein Hox-B8 isoform X1"
                     /protein_id="XP_065507121.1"
                     /db_xref="GeneID:135998022"
                     /translation="

MSSYFVNSLFSKYKTGDSLRPNYYDCGFAQDLGGRPTVVYGPSTGGTFQHPTQIQEFYHGASSLSSSPYQQNPCAVACHGDPSNFYGYDPLQRQSLFGAQDSDLVQYTDCKLAASGLGEEPESSEQSPSPTQLFPWMRPQAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKMERAQEVDEEGEAQKADKK"

     misc_feature    433..603
                     /gene="HOXB8"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      

atgagctcttattttgtcaactcactcttctccaaatacaaaaccggggactccttgcgtcccaattactatgactgcgggttcgctcaggatctggggggcagacccacggtggtgtacggacccagcacggggggcaccttccagcaccccacccaaatccaggagttctaccacggagcatcctcgctctccagctccccttaccaacagaatccctgcgccgtggcgtgccatggggaccccagcaacttctatggctacgaccccttgcaaaggcagagcctgttcggcgcgcaggactcggacttggtgcagtacacggactgcaagctcgctgccagcggcctcggcgaggagccggagagctcggagcagagcccttctccgacccagctcttcccctggatgcgaccgcaagccgctggacggaggagggggaggcaaacctacagccgctaccagacgctggaactggagaaggaatttctatttaatccctacctgacccgcaaacggaggatcgaggtctcgcatgccctgggattgacagagaggcaggtcaaaatctggttccagaacaggaggatgaaatggaaaaaggaaaacaacaaagacaagtttcccagcagcaaatgcgagcaggaagaactggaaaaacagaaaatggaaagagcccaggaggtggacgaggaaggggaagcacagaaggcggacaagaaataaaaggatttttaaggactgaaaggcaagcgctgctggggtgaagagcccccgagccccacgttaatggcagttaatgtaagggaggggtgggaaaaaaaaccaacaatgcatagaaaagagaagggaaaaaaacccttttattgctgtaaaacaatatagctgtaagcaccactttcctgattatcctttgataaaatgaacagtatgcaaaagtgatcgggaggtctctcctgccttttgccagttattaactagtggtagtgtaacgcaatagcttatgtaaaacatgactgtgaaattctctctctctctttctctctatctctctcttctttcctggggggtgggttggttaacatagctttcaatgctataggagttacgtgaaattacatttgtgcacttttaaaaaattattttccacatttttttgttgtgctttatctgtatgtactggaggtagctattgaaacaaacatcccaacaacatgaaactgcctatttatgctatagttatctctctctttctctgtc

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