LOCUS       XM_064644646            6062 bp    mRNA    linear   VRT 24-APR-2024
DEFINITION  PREDICTED: Pseudopipra pipra lymphocyte activating 3 (LAG3),
            transcript variant X2, mRNA.
ACCESSION   XM_064644646
VERSION     XM_064644646.1
DBLINK      BioProject: PRJNA1098008
KEYWORDS    RefSeq.
SOURCE      Pseudopipra pipra
  ORGANISM  Pseudopipra pipra
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Pipridae; Pseudopipra.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_087550) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036250125.1-RS_2024_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/18/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6062
                     /organism="Pseudopipra pipra"
                     /mol_type="mRNA"
                     /isolate="bDixPip1"
                     /db_xref="taxon:415032"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /geo_loc_name="Peru"
                     /lat_lon="10.38 S 73.8 W"
                     /collection_date="2011-05-26"
                     /collected_by="Gleen F. Seeholzer, American Museum of
                     Natural History"
     gene            1..6062
                     /gene="LAG3"
                     /note="lymphocyte activating 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     Proteins"
                     /db_xref="GeneID:135409305"
     CDS             4009..5529
                     /gene="LAG3"
                     /codon_start=1
                     /product="lymphocyte activation gene 3 protein"
                     /protein_id="XP_064500716.1"
                     /db_xref="GeneID:135409305"
                     /translation="

MRLMSLVLFLTFALLAFSAGHIPAGLAEGESREQKMWVREGSSAVLPCHLSPRKMRKSLKQLPDKISVQWKRHGGSVHQESHGVLEVGYSGLQKTALLMKPRVSLQDSALHNGNFSLRIDPVRSEDAGLYEARVEYNSEVHSCHVELGVITVTLSPPNPVEENKLLLMSCNSSYRGSLVEICWFHNGHLGPTSRTFCSLSGALSILRPAMSDAGSWRCQLRYSDNEIISATYDLQILGFDGPTNPVVYAAAGSAAHLPCSLSYLPSSFQMNMVTAHWSHLAGGHLQDWDIFPNLSNRSFPLHLPVVGPGDAGQYRCAVSVGHKTISREVTLAVVTVTPSIQGPVSEGSRLLLICSLTHSRGHERFQWKHLDSVPTKSKLAVATPQNLEGSSAQMGPILKIPKVSQKDTGTWECSVYGPEGQLGRVEYELQITSAQVSSPPALFSGQVTFGLTLTLFLLLAVCVVALALQKRAQTPAFSALEGMIGVPGPWKSMKENQKGKIQQTEC"

     misc_feature    4108..4449
                     /gene="LAG3"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    4138..4152
                     /gene="LAG3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409462"
     misc_feature    4207..4221
                     /gene="LAG3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409462"
     misc_feature    4351..4365
                     /gene="LAG3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409462"
     misc_feature    4393..4410
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409462"
     misc_feature    4462..4677
                     /gene="LAG3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    4504..4518
                     /gene="LAG3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409410"
     misc_feature    4546..4560
                     /gene="LAG3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409410"
     misc_feature    4591..4623
                     /gene="LAG3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409410"
     misc_feature    4651..4668
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409410"
     misc_feature    4741..5007
                     /gene="LAG3"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    4771..4785
                     /gene="LAG3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409461"
     misc_feature    4828..4842
                     /gene="LAG3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409461"
     misc_feature    4945..4962
                     /gene="LAG3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409461"
     misc_feature    5038..5271
                     /gene="LAG3"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
ORIGIN      

caaagctggcacgtgtctcccatccctctttgctcttgagaaaacccagtgcagccctgggatatttggaaggctattgcatactttttgattgtattagaagcatgaacactgcaatgagaagggagtcgaaatataacctagtttgctgcatggatttttgtatttaatccaccccaccctctgtgttgcaaaacatggaggttgtggcatcaaaaatatcacttaacgaggtattggccaaggtactgatagccataaccatctccacaggtagctgtgttaaccaataaggattctgtaagtgtcccatctctccttgaggaagaatctggaggtcttttgaaagagaatagttatacagtcctccacagcgaatgctggccagttacaagatgccagatgccaaatatgcccatgaatgctgcagattttcttcagtaattaaatcattggggtttttgttatgttttgggggttttttttagcagaaatgcagcccacaactttagtcagatccccccaatgttgtttctgactttctaattcaggtttctctgggatatgcagctgagtattgtcacacaaagggtactcaccttctagcacagtaaagaaagaggctgcagatttgtccaaagaccccataaagctatgttttcttaaaggtgctctcatgggattctgggaagcagggcactgctagactctcctcagtgctatatcagagatctgtggtgactcaggcactgcctccctaaaaaggaccctttcaaaaaagcctcccaatcaggcagccaatcactctgcttcctcctagcacttctgcagtggcacattttggttttgtccagatctactgggagatggaaactttctcttttctggtgctcttctcctcactgctttttgggacctgtcatctcagatgaatgggtcccttctccaagaccaccctctgatgtgttgacctgtggtgtacccagcccctggggagataacatgccgcttccaggcatcatgaaacatgtttggtacccaccctggacttaatttcatatacagaatgtacctctggttggcaccttggcagaaattatcatggccctttgtgtgggaaaagtggcttgcattcctctacctcgagggtgcctattttgatgcattaccccattgtgcatctcacagaaagcctgccaagctgtgcacaccagctctttctgcctcagggttctgcagcttgacctctctgcagcaacaaggtgttgacttgggaaccactgcatctgtcccaagtgcccagagaagggcagctccactacttcctctctgcagctgagcttagatttcttttagttccctaaacttcccagtcagtgccagaagtcttgcagttaatcccagtccctgttgcctgtgcaggcgcctgttgggtaccaacctgcccagcagctcttgctcacaccacatccttgccagaccttcccttctgtttccccaggtgtggctgctttttgtttacagttccttgccatgaagttattagttatctcccattagtaaggaacttggttttgcctgctatgtttgctttagcactggacaaacagcaatcaggatgttttacatgaggtccttctggcaagcactctatctcaggaacgcccagacaagctgataactcagtcttcaagtcatggcatggtttcctagatcagctgaagtctgaaaataaattctagagcacctgagaaagtcagcataaagtggaagattgtgactactttcagatttgatggtgcaaggaccaaaacatgaaagtggaatcattcagagaaaaacacggtattacggaaatctggaaatgcagtggaaaattccttcagcaagcctaactcaatgatactgcagaacagtgttttctattcctatttttcttggtgaatgtagtttgcatccataagacatgccaagagagacaagaagagcaatgtattaaggttgtgcacaagacgactgctgcggtgaagtctggaacctggctgaagctactaatgcctaacatggacaaaggagcatttagtgagctgggcttctacgtccctgcccttggctactcctgttgcagcctgcccctcattccccatggctctgccagggtcccacacatccctgtcagcctctctgcccaggggacccacgtgggcagttctgagaagatgtccctgtgctgatctctctctggtcactgttatctctgcctctgggtctcattctgggagatgacgaaaatgctattcgagggagtcagcatttaaaatgggtcgttagagagaaacgtcacagtgtctttgctaaagatagcctggtgctgagtaaaacagtgcctctaaaaccttccttttacaacacgctcactcagcataataacccctcggcctcaaacacccctccccagtgccaggcagctcctgtcattttcctgggctgtccatcagtctcttgtgaccacctcttgggaagctgtagcaggatgggactacgtcctctgctttgctgagtcttacaagagataagcatttcctagagcatgaattcatttaaaagtggttttgagggctaaagtggaatagtgccagggtgacaaggctacaagagcagagagagttgagatggagggagagagcaatgagctcagtgtacccctcaagtgaagccaggagagggggagcagatgatgctggactgcagcaatgtgtctctccatcacggttccaactcccttctctctctctcaccttcacccacacactcacaccattcttgcactgctgattcaagggaaagaagcggttgatgctttctgcttgaactggtcaccacaaactgtttttcttgaacagtaggaaaaaaacacctcctgacaactgtcgcaagttcaaccctatctttgctcctctctttctctctcatgcgatcctatggactgtgttacacaagagggcatgtgggaccactgcaaagcagtccctcggggacatggaggcacatgaggttccacctgtacaccaatcccactcctcaggaggctggagagccatgtgtgatgaaagagatgagacctgtcactgcaataggggtctgctgaagcgaggcatagcactggccctcttttatcctccaccttcaccacccagctgaggaaaaccagagagcaagcaaggatccttccacagttgaaaagtggccactatgagtcacctcccctcccccagcctgaggaaaagccccaacacttgggggatgagccaccgaggggcttgggtgtctgacacatgtcacgaagggctgattaagtccgaaagagtcagagcagtgggctgctggaaagtgtgaaccacaacagtgggggttctctgatacaaaatgggtcctaggatgaggcacatggatggaaatgtattgccctatgtaaaggtcagcagcttaatgggagctaggttgagccccctctgtgcatgagcttgagtgggttttcccagaactgctggaggaggagggtcccttcctcacactcctcgtcgtcccacagtattcagcccctcttttcggttctgattccttcttctggatgctcctctctatctccttggaccactcgggctttgtcccatattggccctggactctagattgatgagtcacatgtgccctacttggagctcaccacagaccatttcctcatgctgcctgtgaactgaccaatgaggaaaagccaggaaattagctcatttggaggattaaagaaggaaagaaaaagaaaatgaaggaaaaaaaaaaaacccaagaagaaagaacagcagaaataaagaccaacatgttctgaaaagccctcaaacaattagagggaagctgcaagaggcggaaagatcaaaccaaaaaagctttggaccttgtcaagcacggacccaagtaggaggcagcccctcgcctttcctggatgccaccatgaggctgatgtccctggtgctgttcctcacctttgccctgctggctttcagtgctggtcacatcccagcaggattagcggagggggaaagcagggagcagaaaatgtgggtcagagaggggagttcagctgtgctgccctgccacttgagccccagaaaaatgagaaagagcttgaagcagctgcctgacaagatatctgtgcagtggaagaggcatgggggaagtgtccaccaggagtcacatggggtactggaggtggggtactcgggcctccagaagacggcactgctcatgaagcctcgggtgtcactccaggactctgccttacacaatggcaatttctccctgcggattgaccccgtcaggagcgaggatgctgggctgtatgaggcacgggtggaatacaactcggaggtccatagctgccatgtggagctgggggtaattacagtaaccctcagtccacccaatcctgtggaagaaaataagctgctcttgatgagctgcaactccagctaccggggcagccttgtggagatatgttggttccataacgggcacctgggccccacctccaggaccttctgctctttgtctggggctctctccatcctgcggccagccatgagtgatgcaggctcctggcgctgccagcttcgatactccgataacgagataatttctgccacgtacgacctgcaaattctaggttttgatggcccaaccaaccctgtggtctatgctgcagctggctctgcagcccatctaccatgcagcctgagctaccttcccagttcctttcagatgaacatggtgacagcccactggagccatcttgcaggaggacacttgcaagactgggacatcttcccaaatctgagtaacagaagcttccccctgcatctccctgtcgtggggccgggtgatgcagggcagtaccgctgtgctgtctctgtgggccacaaaacaatcagcagggaggtgaccttggcagtggttacagtgactccaagcatccaaggaccagtttctgagggtagtcgtttgctgctcatctgcagcctcacacactcccggggacatgaacgtttccagtggaagcaccttgactcagtccccactaagagcaagctggctgtggccaccccccaaaacctggagggcagcagcgcccagatgggacccatcttgaaaatacccaaagtgtcacaaaaggatacgggcacatgggaatgcagtgtatatggcccagaaggccaactgggaagagtggagtacgagctgcagatcacaagtgcccaggtctccagccctcctgctctcttcagtgggcaagttacttttgggctcacactcaccctcttccttctgcttgctgtctgtgttgtggctctggccctacagaaaagggcacagactcctgccttctcagcactggaagggatgattggagtccctgggccgtggaagtcgatgaaggaaaaccagaaagggaagatccaacaaactgagtgctgacaggagcagggacaccagggctagtctgcatgggaggatgaaaatctgtgtgccgtgctgcagagagatgggtgccatgcagacctgtcaggggggtctagggatggcatgaacaatgcagaaggtattgggagctctgtatctgcagaggggctgggagctgcctaccagggcaaggcaagcctcactgctgcagtaaggtggccagcagcacagatgctttggagctattgggagtgtttgagccagtagttattgcctgcttcagtgccaaatctctgcctactctttgtcccttttttgtggctcctctcacaacctttctctggtggaacaccaggatgcaggagatggctggaatctgtctttcctgcagcctgatggtgttttctgccccccttgcttgctttcttctctctctgcctgcactgccctgatcactgccctgttgcatattttgagcattttaacttattagaaactcattttagaactgaaaataaatctatgtgacaaaaaagcctgctggtccc

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