LOCUS       XM_063921529            1906 bp    mRNA    linear   VRT 25-MAR-2024
DEFINITION  PREDICTED: Pseudophryne corroboree vimentin (VIM), mRNA.
ACCESSION   XM_063921529
VERSION     XM_063921529.1
DBLINK      BioProject: PRJNA1082331
KEYWORDS    RefSeq.
SOURCE      Pseudophryne corroboree (corroboree frog)
  ORGANISM  Pseudophryne corroboree
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Neobatrachia; Myobatrachoidea;
            Myobatrachidae; Myobatrachinae; Pseudophryne.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086448) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_028390025.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/29/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1906
                     /organism="Pseudophryne corroboree"
                     /mol_type="mRNA"
                     /isolate="aPseCor3"
                     /db_xref="taxon:495146"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney, liver"
                     /dev_stage="adult"
                     /geo_loc_name="Australia: Melbourne"
                     /lat_lon="37.801993 S 144.959087 E"
                     /collection_date="2020-11-03"
                     /collected_by="Lee Berger"
     gene            1..1906
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 48 Proteins"
                     /db_xref="GeneID:134927287"
     CDS             111..1493
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_063777599.1"
                     /db_xref="GeneID:134927287"
                     /translation="

MATKSSYKRLFGGNPRSSSSGGRYATSSSSKYSLGSAYRPGGGISSRTVYTTSSSPAVFKSSSVRLRSSLPPARMQDNVDFSLADAINLEFKANRTNEKAEMQELNDRFANFIDKVRFLEQQNKILLAELESLKGKGTSRVGDLYEEEMRDLRRQVDILTNEKGRIEVDRDNLNDDLQRLRERLQDEMIQKEEAENNLQSFRQDVDNASLARIDLERKLESLQEEIIFLKKLHDEEIRELQAQLQEQHVQIDMEVAKPDLTAALRDVRQQYENVAAKNLHEAEEWYKSKFADLSEAANRNNDALRQAKQETSDYRRQIQALTCEVDAMKGSNESYERQMREMEENFAIEAANYQDTINRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISIPIQSFSSMSMRESNLDSLPVSSNKRTVLIKTVETRDGQVINESSQHHDDYQE"

     polyA_site      1906
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

agtgccagggctctttcctgctaaagcattggctggagtgcacagggggaccaggcagcaccatctattgagctctcaggatttacaaaaacagcaactttacaacagccatggccacgaagtcttcatacaagagattgttcgggggcaaccccagatccagctcatctggagggcgctatgccacttcgagcagcagcaagtactccctgggcagtgcctaccgcccaggtggtggcatcagcagccggacagtctacacaacctcttcttccccggctgtcttcaagtcctcctcggtcaggctgaggagcagcctccccccagccaggatgcaggacaacgtggacttctccctggcagatgccatcaaccttgaattcaaagccaacaggaccaacgagaaggctgagatgcaggagctgaatgacaggtttgccaacttcatcgataaggtccgattcctggagcagcagaacaagatcctattggctgaactggagtctctgaaggggaaagggacctccagggtgggggacctctatgaagaagagatgagggatctcaggaggcaagtggacatcctcaccaatgagaaaggcaggatagaagttgacagagacaacctcaacgatgacctccaaagactcagagaaaggctgcaagatgaaatgattcagaaggaagaggcagagaataacctgcagtcattcagacaggatgtggacaacgcctccttggcacgcattgacctggaacgcaaactggaatccctgcaagaagagattattttcttgaagaagttacatgatgaagaaatccgtgagctccaagcacaactccaggagcaacatgtgcagatcgatatggaagttgccaaaccagacctgacagcagccctgcgcgatgtccgtcagcaatatgagaatgtggctgctaagaatctgcatgaagcagaggaatggtataagtctaagttcgctgacctgtctgaggctgctaatcgcaacaatgacgccttgcgccaagccaagcaggagaccagtgactaccgccggcagatccaggctcttacctgtgaagtcgacgcaatgaaaggatctaacgagtcctatgaacgccaaatgcgtgaaatggaagagaacttcgccattgaagctgctaattatcaggacactattaaccgcctgcaagatgagatccagaacatgaaggaggaaatggctcgccacctccgcgagtaccaggatctgctgaatgttaagatggcccttgatatcgagattgccacttacaggaagctgctggaaggagaagagagcagaatttccatcccaattcagtccttttctagcatgagcatgagagaatctaatcttgactcactcccagtgtccagcaataagagaacagttcttattaagactgtggagaccagggatggccaggttattaatgaaagttcccagcaccatgatgactatcaggagtgaagtctgaagtctatcctgttggaaccaattagaaaaccttgaccagcaacataatattgtcccttgtgtttaaactttgaagaacatcagctttcaagtgcctttgctgttaatccaagagcgggagatagatcctatagggcagagtaagccatcctatggctccccatgcactcatctttccaccacagctggggagacataggttgcctaatcctgctgtagagggtaattagccattgggtttttggagagtgaagtcctttttggacgacagtggttttacttcagtctagtttacgaacactattatagcaatatcttgtgccgcaatactgtttttaaagtatccaagaaaagctttttacttcccggcaacctgtcagagcttcaataaatctttagaaataaaa

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