2024-10-04 20:01:14, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_062924652 4530 bp mRNA linear PLN 07-FEB-2024 DEFINITION Colletotrichum destructivum Putative Homeobox domain, HTH CenpB-type DNA-binding domain, Homeobox-like domain superfamily (CDEST_08493), mRNA. ACCESSION XM_062924652 VERSION XM_062924652.1 DBLINK BioProject: PRJNA1073607 BioSample: SAMN37882108 KEYWORDS RefSeq. SOURCE Colletotrichum destructivum ORGANISM Colletotrichum destructivum Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Glomerellaceae; Colletotrichum; Colletotrichum destructivum species complex. REFERENCE 1 (bases 1 to 4530) AUTHORS Lapalu,N., Simon,A., Lu,A., Plaumann,P.-L., Amselem,J., Pigne,S., Auger,A., Koch,C., Dallery,J.-F. and O'Connell,R.J. TITLE Complete genome of the Medicago anthracnose fungus, Colletotrichum destructivum, reveals a mini-chromosome-like region within a core chromosome JOURNAL bioRxiv (2023) REMARK DOI: 10.1101/2023.12.16.571984 REFERENCE 2 (bases 1 to 4530) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-FEB-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4530) AUTHORS Lapalu,N., Simon,A., Lu,A., Plaumann,P.-L., Amselem,J., Pigne,S., Auger,A., Koch,C., Dallery,J.-F. and O'Connell,R.J. TITLE Direct Submission JOURNAL Submitted (19-OCT-2023) SPE_BIOGER, INRAE, 22 place de l'agronomie, Palaiseau 91120, France COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_085900). FEATURES Location/Qualifiers source 1..4530 /organism="Colletotrichum destructivum" /mol_type="mRNA" /strain="CBS 520.97" /host="Medicago sativa" /db_xref="taxon:34406" /chromosome="5" /geo_loc_name="Saudi Arabia" /collection_date="1994-08-01" gene 1..4530 /locus_tag="CDEST_08493" /db_xref="GeneID:87944996" CDS 479..4267 /locus_tag="CDEST_08493" /codon_start=1 /product="Putative Homeobox domain, HTH CenpB-type DNA-binding domain, Homeobox-like domain superfamily" /protein_id="XP_062780703.1" /db_xref="GeneID:87944996" /translation="
MTTIPEDMDEFVNWEAAAAEVGNIFNMSSQDVAVPPTDPNLDLDLVLENADDDDFGFFALEHFSGGPAPGIQATDNPVDLVHDSQLTSAQEDWWYTPDAPCDSCILGGYQCKKIKEAGSSVYEHYCTSCVALRSECSFAKHLPATARLGPLEPLPSSNPWPTMGDHPRSVREDSGIADLLHSHNSWPAMGDPPGSARDDGAMLAGLPATSTPDLLRSLTASASADEPAAAVPPTKTTTSAKIGARFSRESVRILKNWLSTHTRHPYPSDEEKEMLQRQTGLNKTQITNWLANARRRGKTQAPRSTSPHPRSYSGAIDIPQRRGTPAPDGRVRHMNPLERWVDSPPENEPAEVTAIARAVASSSGASSSGLTSPYSFNFTDDGSGRSLCNASSASSLGTSHSSGGSFASAYSHASRGSFGSFGSFNRGRRRRRRRAGANPVDEKTSLAPASKTFQCTFCTETFRTKHDWQRHEKSLHLSLERWVCSPDGPVALNPETNQLCCVFCGEANPDQAHTEKHNHSQCQERSLEERTFYRKDHLNQHLRLVHDTKFSEWSMKSWKVATPEIRSRCGFCGCVLDSWKQRTEHLSEHFKGGTTMADWKGDWGFEAPVLEMVENSIPPYLIDNERNSPYPYQASGAPAETPRSAYELIKVELAHFMQNHYDKYHTLPSDEQMQLESCRIIFASEVLSIREISYPFSWLRDLLMGDDDLMRQAKIGKMRSQAENRLSTLKLNGKDTLFERCPLEEQLHEFVRAKRLLGLTAMDEELQTESCNIVGRIEEVSTAPSDFIASWLVRCINRSTNWLANFRQRAHLPRTEDIVVENERSTDATKIDSTIHNYSRLERSLADYLERQRSMGIEPCNDSLQREARIIIYEFDDGWNQTAADNLDWLAAFRHRHPSASVQASSLTTTPASQSQLSQGGIQQAISETSPSNVSSANASKSLACPFLTDETADDYGARDQAPPSLTQTGPFFLNDANCFRRLMRELARWTSKYPPESITDEMLQRQARVILYNDDDPWNQTAADNAEWLLRFKRDCGLIRDPGPGLPPGDAWSLAQGGTGFAPPYAFPKGAMAPFSEKTTDVPIRNVKVFEIQSDITNRYLETFKTRYPKPATIFCSRELEDGLVKFVETEMALSGQFPDDDSLRAHASFILNAPETAANDSALLGKFKGWMMTRGQQSGQQQKRQQQQPVLFHPQPRMPAPSASASASVPTLPTGMDLTLSDAEMNNILRDMNFDLSTADLEGLDMNMGMGFSGEAGPSS"
ORIGIN
gggcgagccaaccacggatgactccgacttggacgctgctcgacgccaaagtccatctggcttgatctggtccgctgtgtaggatgaaagcctttgaataaaagatttcatcacctggatattggtgttccagacttgtgcccttttctttctgataaacgtcttgtattttcttcgtttgcctccgtggaacccgtcgcttgtccacctcgaggctggcctggactcgactctgaccgtccgaccatttgcctgtctctgcctgtctggccgtaagaagctcacacactgtcattgggcggggcttcctaacgacgccctttcggctcattgacgacttgacaagtcccgtcgacccgacacaccggggaccgcgccctatcgatatacatctgcaggaggttgctccatgacaccgacgcccttcggcacctcaattcaatcaacccacgccctacgttaagggccaaccttcaccatgaccacaatcccagaggacatggacgagttcgtcaactgggaggcggccgctgcagaagttggcaacatcttcaacatgtcctcccaggatgtggctgtgccgcctaccgaccccaacctggatctggatctggttctggagaatgccgatgacgacgactttggtttcttcgccctcgaacacttttcgggggggcctgctccaggaatccaggccactgacaacccggtcgatctggttcacgacagtcagttaaccagtgctcaggaggactggtggtacacccctgatgcgccgtgtgacagctgcatcctcgggggttaccagtgcaaaaagatcaaagaagccggttcgagcgtctatgagcattactgcacgtcttgcgttgccttgaggagcgagtgtagctttgccaagcacttgcccgccaccgctcgcctcggcccgctcgaaccgctaccctcctcgaacccctggcctaccatgggagaccacccgcgctccgttcgcgaggacagtggcattgcggacctcttgcactcccacaactcatggcctgccatgggagacccccccggttccgcccgggacgatggtgccatgcttgctggcctgccggcgacttcaacaccggacctgttgcggagtctgacggcttccgcgtccgccgatgagccagccgccgccgtaccgccgaccaagacgacgacctccgccaaaatcggagctcggttctcgcgggagtctgtccgtatcttgaaaaactggctctcgacgcacactcgccatccttaccccagcgacgaagagaaggagatgctccaacgccagacaggcctcaacaaaacccagatcaccaactggcttgccaacgcccgccgtcgcggcaaaacacaggcacctcgctccacctcaccccatccccgcagctacagcggcgctatcgacatccctcagagacgaggaacgcctgccccggatggcagagtgcgccacatgaatcccctggagcgttgggtcgactcccctcccgaaaacgaacctgccgaagtgaccgccatcgctcgcgccgttgcgtctagctccggagcgtcctcatcgggtcttacgagcccgtacagcttcaatttcaccgacgatggttctggtcggtccctctgcaacgcctcctcggccagcagtctgggaacttcccactccagcggcggctctttcgcctccgcatactcccatgcttcccgcggctcgttcggctcgttcggatccttcaaccgtggccgccggcgccgtaggaggcgtgccggtgcaaaccccgttgacgagaagacctctctcgctcccgcttcaaagaccttccagtgtacattctgtaccgaaacgttcagaaccaagcacgactggcaacggcacgaaaagtccttgcacctttccctggagagatgggtctgcagtcctgatggtccggtggctctcaatcctgagacgaatcagttatgttgtgtcttctgtggcgaagccaacccggatcaggctcacacggagaagcacaaccactcccaatgccaggaaagaagtttggaagagcgcaccttttataggaaagatcatttgaaccagcacttgcgccttgttcacgacaccaaattctccgaatggtctatgaagtcctggaaagtcgccacgccagagattcggtcacgatgcggtttctgtggctgtgtcctcgactcgtggaaacagaggaccgaacacctcagtgaacatttcaagggcggaaccaccatggccgactggaagggagactggggttttgaagcaccggtgctcgaaatggttgaaaattcgataccgccatatctcattgacaatgagcgaaactcgccctatccctatcaggcctccggcgcccctgcagagacgccgcgctcagcttatgagctcatcaaagttgagctggcacactttatgcagaatcactacgacaagtatcacactttgcctagcgatgagcagatgcagctcgagagttgccgtatcattttcgcttctgaagtcttgtccatcagggagatctcgtaccccttttcgtggttgcgtgatctattgatgggagacgacgacctgatgagacaagcgaagattggaaagatgcgatcgcaggcagaaaacagactgtcgaccctaaagctcaacggcaaggatactctcttcgagcgctgtcccttggaagagcaactccacgagttcgtcagggcgaagaggctactggggctaacggccatggatgaagagttgcagacggagagctgtaacattgttggccgcatcgaggaggtttcgacggcacccagcgacttcatcgccagctggcttgtacgatgcatcaaccgatccaccaactggctagccaacttcagacagcgggcccaccttcccagaacagaagacatcgtcgtcgagaacgagcggtcgaccgacgccaccaagatcgactcgaccatccacaactacagcaggctggagcgttccttggccgactacttggagagacagaggagcatgggcatcgaaccttgtaatgacagcctgcagagggaggccaggatcattatatacgagttcgatgacggttggaaccagaccgccgctgataatctggactggcttgcggcattccgacatcgccatccgtctgcctccgtacaggcctcaagcttaacgacgacgcctgcttctcaaagccaactttctcagggtggtattcaacaagccatctccgagacttccccatcgaatgtttcctccgccaacgcctcaaaaagcttggcctgtcctttcttgacagacgaaaccgccgatgattacggagcacgcgatcaggctcctccctctctcacccaaaccggcccatttttcctcaacgacgcgaactgttttcgtcgcttgatgagagaactagcacgatggacttcgaaatatccgccagaatcaatcacggatgagatgctccagcgacaggcgagagtcatcctgtacaatgatgacgatccctggaaccagacggcggccgataacgccgaatggttgcttcggttcaagcgtgattgtggcttgatccgcgaccccggccccggcctgcctcctggggatgcctggtctcttgcgcaaggcgggaccggtttcgcgcccccgtacgcctttcccaagggcgccatggcccccttcagcgagaagacaacggatgtgccgatccggaatgtcaaggtctttgagatccagtcggacatcacaaaccgctacctggaaacgttcaagaccaggtacccgaagccggctacaatcttctgctctcgcgagcttgaggatgggctcgtcaagtttgtcgagacggagatggcactttcggggcagttccccgacgacgactctcttagggcgcatgcctctttcatactaaatgcgcccgaaaccgcagcgaacgattctgctttgctgggcaagttcaagggttggatgatgacgaggggtcagcagtctggtcagcaacaaaaacgacagcagcagcagcctgtcctgttccatccgcagcctcgaatgccagctccgtcggcgtcggcgtcggcgtcggtgccgactctgcctacgggcatggacctgacgctctcggatgcggagatgaacaatattctgcgagacatgaactttgacctgagcaccgcggacttggagggtctcgacatgaacatggggatgggtttcagcggcgaggcagggccttcttcctagcaggagggattgcatttcgagaataatgtttacgacggttttcttgggttacaaaagcggagttttgtgctgcgcctgaacgttggtttgtttatagactctacaggattgatcttaaaaaaattagaagaaaaggcagactatacaatgccagactgacaggcgtctaacgaacggaaagtgttgtatacctaatatatgcttatttcaaagatacggaggccttacccaggcaggccacgtcgtggcgagttgggtttcaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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