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2024-10-04 20:19:34, GGRNA.v2 : RefSeq release 225 (Jul, 2024)

LOCUS       XM_062916664            4568 bp    mRNA    linear   PLN 07-FEB-2024
DEFINITION  Colletotrichum destructivum Putative Homeobox domain,
            Rhodanese-like domain, Homeobox-like domain superfamily protein
            (CDEST_00505), mRNA.
ACCESSION   XM_062916664
VERSION     XM_062916664.1
DBLINK      BioProject: PRJNA1073607
            BioSample: SAMN37882108
KEYWORDS    RefSeq.
SOURCE      Colletotrichum destructivum
  ORGANISM  Colletotrichum destructivum
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Sordariomycetes; Hypocreomycetidae; Glomerellales; Glomerellaceae;
            Colletotrichum; Colletotrichum destructivum species complex.
REFERENCE   1  (bases 1 to 4568)
  AUTHORS   Lapalu,N., Simon,A., Lu,A., Plaumann,P.-L., Amselem,J., Pigne,S.,
            Auger,A., Koch,C., Dallery,J.-F. and O'Connell,R.J.
  TITLE     Complete genome of the Medicago anthracnose fungus, Colletotrichum
            destructivum, reveals a mini-chromosome-like region within a core
            chromosome
  JOURNAL   bioRxiv (2023)
  REMARK    DOI: 10.1101/2023.12.16.571984
REFERENCE   2  (bases 1 to 4568)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 4568)
  AUTHORS   Lapalu,N., Simon,A., Lu,A., Plaumann,P.-L., Amselem,J., Pigne,S.,
            Auger,A., Koch,C., Dallery,J.-F. and O'Connell,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2023) SPE_BIOGER, INRAE, 22 place de l'agronomie,
            Palaiseau 91120, France
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_085896).
FEATURES             Location/Qualifiers
     source          1..4568
                     /organism="Colletotrichum destructivum"
                     /mol_type="mRNA"
                     /strain="CBS 520.97"
                     /host="Medicago sativa"
                     /db_xref="taxon:34406"
                     /chromosome="1"
                     /geo_loc_name="Saudi Arabia"
                     /collection_date="1994-08-01"
     gene            1..4568
                     /locus_tag="CDEST_00505"
                     /db_xref="GeneID:87937008"
     CDS             367..3747
                     /locus_tag="CDEST_00505"
                     /codon_start=1
                     /product="Putative Homeobox domain, Rhodanese-like domain,
                     Homeobox-like domain superfamily protein"
                     /protein_id="XP_062772715.1"
                     /db_xref="GeneID:87937008"
                     /translation="
MGDHQPYVTIRSRRPADGNSVSSADSTVGARVSTHQSRRVQVNSQAGHVQYGSSSGDVPRTATHDISRVSYHVKHLNSFAQTLEDSANRAFPNRGRSSQRYKKVQALLLHWGCDDLFVLPELEDLERCLREDYAFDTGIFPIPSENSHLELMMQVGRLIKDHEAQDTLFLVYYGGHARIDESRQSTWCATRHPDSPWLQWSAIQTLLERSASDVLILLDCCAGAASATFPNGNSITETISASSWDAIAPDPGRYSFTNALIEVMQEWRLRAFSAAMLHAEVLARLKHPRPVTINGKLFEARSTPVHFMMTSNHKAPSIELSRVLPAEKPPPSPPQENPVSADGSEAPEGVTGGRGPGAPISSEPNEDTPHVMISLALEDDQQLDLNAWEQWLSNFPALAKYVKVQGVFKSHSTLLLVSMPVMIWDLLPEDHATSFVAFIRSNNLMAHKTQKEATKIELSTIRGSRAVPDSTQPDSASMNTFFSDTTYTYSPTETGCIIGQQVAGPRSSSLGDNTVSRRHTNGQVTVPRSPLASPSSPPFGDSSEPMHSASSLGSLETLQRQIASSSQAPSEAAISRTMIPNQQRSARRTIFHDIPEPPRFSQHVETLLQQYYRQDYLPSDDQKNFVASNLGIEIRHVDAWFHHRRQRDIVSQQFQKLRVNDPAPGIARGVQMLLPHHLKRIIEVLPPNRILLIDLRAPSDYEKSHIRGAINFRAPLSFVQETSFDMIERAFSDHESRQKFGEWQSTACMVFYARAADLPWECPVADVLYSKFKSWGWTGRCFVLKGHYKEFSVSYSESIAGSKVPDEARAHAETLLRDSNQTWTSSEDGDAARRAQYEELLNQIDSESRVSSSSSPKPSASSDRGVAMNQHERDLEAEFRRRVPDLYRKAMEVQGGSSSSRRAAPGMPHVAPVAGGETSTAAPEEATSGQTKAARWDGSPTGNFAGRGDGGDRGGGGDKDSTTAFGLDTKAPLVDYLDRGLSHIRQGRPSDASVAASTTASPDKTNTNTTTTTNTPTAGLSKLAAECCHAAYFDSSAAVSTPSDDSYVKISRRDAQQAGDHPSMPSSPSSPPLVPGQGHHHRQGHHGGLGEKDGTTDVVAVGGGPSGDETPKRGRSGFLSKVLRRA"
ORIGIN      
aagtgggatggatcatgggtgagatgccgcacctgccctccgtccaccgagaccgacggaacactgccgacgtcttccctcgatttcctttctctttctctcaggtcgagggactctccgttcaaatcgttcaacaatgcatcagacgccgtccccgagactgcagtctttctggcttctacatcccgcctagtttcgtcctctcatcgcgacatgcactccgtcaacacttcgtagcaacgctatcccacgcccgaatacatcgccaggcccttacgatatcccaatagtcccagcggacacaaccgacgagctttgcagtttccgaaggaagggtcagcgaagcaagggacatccgcagacaacatgggcgaccaccagccgtacgtgaccattcggtcgcgacgacccgccgatgggaacagcgtgagcagcgcagactcgactgtaggtgccagggtctcgacacaccagtcgagaagagtacaagtaaactcacaagctggtcatgtccagtacgggtccagctccggcgatgtgccccgcaccgccacccacgatatcagccgcgtgagctatcatgtgaagcatctcaacagcttcgcgcagactttggaagattccgcaaaccgggcatttcccaaccgcgggagatcttcacagcgatataagaaggtccaggccttgctgctccattggggttgcgacgacctctttgtgctgcccgagctagaggacctggaacgttgtctccgcgaggattatgcctttgacacgggaatcttcccaattccgtcagagaactcacacttggagctcatgatgcaagtggggaggttaatcaaggatcatgaggcccaagacactctctttctagtctactacggtgggcatgccaggatagacgagtccaggcagagcacttggtgtgcaacacggcatcccgactcaccctggctccaatggtcagcgatacagacactgctggaacgttcggcgtccgacgttctcatcctcctcgactgctgcgccggcgccgcaagcgcaaccttccccaacggcaacagtatcacagagaccatctccgcctcaagctgggatgctatcgccccagatccgggtcgctattcgttcaccaacgccctgatcgaggtgatgcaggaatggcgcctccgcgccttttccgcagcgatgctgcacgccgaagtccttgcccgcttgaagcacccacgtcccgtcaccatcaacggcaagcttttcgaggccaggtcgactcctgttcatttcatgatgacgtctaaccacaaggcgccgagcatcgagttgtcccgagtcctacctgctgagaaaccaccgccctcgcctccgcaggaaaacccggtgtccgcagacgggagtgaagcgcccgagggggtgaccggcgggcgagggcccggtgcccccatatctagcgagccgaacgaggatacgcctcacgtcatgatctcgcttgcgctagaggatgatcagcagctggatctcaacgcatgggaacagtggctatcgaatttcccagccttggccaaatatgtcaaggttcagggcgtttttaaaagtcactctacacttcttctggtttccatgccggtgatgatatgggacctcctccctgaagatcatgccacctcttttgtagccttcatcaggtcgaacaaccttatggcccataagacacagaaagaagcgaccaaaattgaactttcaacaatcagaggctcccgtgccgtacccgacagcacacagcccgactctgcgtcgatgaatacgttcttttccgacaccacgtacacctattctccaacggagacgggttgcatcattggccagcaagtagcgggcccacgatcgtcctcgttaggagacaacacagtctcaaggaggcatacaaatggacaggtcaccgttccgcggtcacctctagcgtcgccatcctcaccgccgtttggcgacagctccgagccgatgcactctgcgagttctctgggttcgctggaaacactccagcgccaaattgcttcatcctctcaagccccatctgaggcggcgatctcaaggacgatgatacccaatcagcagaggagtgcccgtaggactatcttccatgatatacccgagccacccagattctcgcagcatgtcgagacgctactccaacagtactaccggcaggattatcttcccagcgacgaccagaagaactttgttgcctcgaatttgggtatagaaatacggcatgttgacgcctggtttcatcatcgacgacaaagggacattgtctcacagcaattccagaagctcagggtgaacgatccagcaccaggaatagcacgaggggtccagatgttactgccgcatcatctaaaaagaatcattgaggtcctgcctcccaacaggatactattgattgacctccgagcgccaagtgactacgaaaaatctcacataagaggcgccatcaatttccgtgcccccctgagcttcgtccaagaaacctcatttgacatgatcgagcgcgccttctcggatcacgaaagcaggcaaaagtttggtgaatggcagtcgacagcatgtatggttttctatgcacgggctgcggacctcccatgggaatgcccagtagccgacgtgctctacagcaaattcaagagctggggctggaccggccgttgctttgtccttaagggtcactacaaggagttcagcgtgtcctacagtgaatccatcgctgggtccaaggtaccagacgaggctagggcacacgctgaaaccctcctacgagacagcaaccagacatggacatcttcggaggatggtgacgcggcgagaagagcccagtacgaagagttgttgaatcagatcgacagtgagagtagagtgagctcgtcatcgagccccaaaccgtcggccagctcggaccgcggggtagccatgaatcagcatgaacgagaccttgaagccgaattccggcgtcgcgtcccagacctctaccgcaaagccatggaagtccagggcggcagcagcagcagccgtagggccgctcccggcatgccacacgtcgcccctgtcgccggaggcgagacatcaacagcggcaccagaagaagcaacgtcaggacaaacgaaagcagcgagatgggacggctcaccgacgggaaactttgctggacgtggggatggcggagatagaggcggaggtggcgacaaggacagcaccacagcctttggtcttgacacaaaagcgccgcttgttgactatctcgacagaggcctctctcacatccgacaagggagaccatctgacgcatctgttgccgcttctaccaccgcctcccctgacaagacaaacacaaacaccaccaccaccaccaacactcccacagcaggattgtcgaaacttgccgccgagtgctgccacgccgcctactttgactcgagcgcggccgtctcgacgccttcggacgactcgtatgtcaagatcagcaggagggatgcgcagcaggcgggcgatcacccttccatgccctcctccccgtcatccccccccctggtcccgggccaaggccatcaccaccgccagggtcaccacggcggactcggagaaaaagacgggacgacggacgttgtcgctgtcggtggtggtccgtccggggatgaaacgcccaaaaggggccggagcggtttccttagcaaggttctgcgacgagcataaatttgaaggagagttacctgtgatgtggtggtgcctgatctaatgagcaacatggaacttgcctgaaggtgatgtgatggccttggcgttcgtctcgacggtgcctcgttgttcgtggtgttctgacttggttgtctctcttgtcaagacgtcccatcgacgagggaggggggtgggaagagggtaaacgcaatcaagactgacttctcaacaccacattcttcttcacttgatgttttgggatcagggacaggatttcacaaacaccggcatactttcggtttgacctgatctggtcgtgtatgtacgatgtaggttcagcgttcctgtccgagttttgaatgacacggcgattcaaaccaaaggttactggaaggggagggtggtggtggtggtaaacaccggtgacgttcggagaacggaagcgtgtccgcgccatacaccgtactgtttcttgtcaaacaccgaccagatcgggaaaggatatcgggcatggtatacaggcatggcctctgctgtaccttttctgtctctctcatgtttccatatttcactttcgctctcgctctcttccccatccaacggctcgatcccgcccgcccgtccaatagtcgcatctttccgtacatacccctttcttatctgctatttaccgggtatgtcgtggagagaagacttgcatatttgtttggagatataggcgagaacaacgctcttgcttgtcctttgcctaaggggtgactggggggaggaggatagctctaaggatactcacatcccagggggctgttgcatggatgggctagagtcaaaatggtgat
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]