2024-10-04 19:52:12, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_062837026 4339 bp mRNA linear PLN 06-FEB-2024 DEFINITION Neurospora hispaniola NRDE-2, necessary for RNA interference-domain-containing protein (B0T23DRAFT_377316), mRNA. ACCESSION XM_062837026 VERSION XM_062837026.1 DBLINK BioProject: PRJNA1072703 BioSample: SAMN06296510 KEYWORDS RefSeq. SOURCE Neurospora hispaniola ORGANISM Neurospora hispaniola Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora. REFERENCE 1 (bases 1 to 4339) AUTHORS Hensen,N., Bonometti,L., Westerberg,I., Brannstrom,I.O., Guillou,S., Cros-Aarteil,S., Calhoun,S., Haridas,S., Kuo,A., Mondo,S., Pangilinan,J., Riley,R., LaButti,K., Andreopoulos,B., Lipzen,A., Chen,C., Yan,M., Daum,C., Ng,V., Clum,A., Steindorff,A., Ohm,R.A., Martin,F., Silar,P., Natvig,D.O., Lalanne,C., Gautier,V., Ament-Velasquez,S.L., Kruys,A., Hutchinson,M.I., Powell,A.J., Barry,K., Miller,A.N., Grigoriev,I.V., Debuchy,R., Gladieux,P., Hiltunen Thoren,M. and Johannesson,H. TITLE Genome-scale phylogeny and comparative genomics of the fungal order Sordariales JOURNAL Mol Phylogenet Evol 189, 107938 (2023) PUBMED 37820761 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 4339) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-FEB-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4339) AUTHORS Haridas,S., Hensen,N., Bonometti,L., Westerberg,I., Brannstrom,I.O., Guillou,S., Cros-Aarteil,S., Calhoun,S., Kuo,A., Mondo,S., Pangilinan,J., Riley,R., LaButti,K., Andreopoulos,B., Lipzen,A., Chen,C., Yanf,M., Daum,C., Ng,V., Clum,A., Steindorff,A., Ohm,R., Martin,F., Silar,P., Natvig,D., Lalanne,C., Gautier,V., Ament-velasquez,S.L., Kruys,A., Hutchinson,M.I., Powell,A.J., Barry,K., Miller,A.N., Grigoriev,I.V., Debuchy,R., Gladieux,P., Thoren,M.H. and Johannesson,H. CONSRTM Lawrence Berkeley National Laboratory TITLE Direct Submission JOURNAL Submitted (26-JUN-2023) DOE Joint Genome Institute, 1 Cyclotron Road, Berkeley, CA 94720, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026944408). ##Metadata-START## Organism Display Name :: Neurospora hispaniola FGSC 10403 v1.0 ##Metadata-END## FEATURES Location/Qualifiers source 1..4339 /organism="Neurospora hispaniola" /mol_type="mRNA" /strain="FGSC 10403" /db_xref="taxon:588809" /chromosome="Unknown" /geo_loc_name="Haiti: Leogane" gene 1..4339 /locus_tag="B0T23DRAFT_377316" /db_xref="GeneID:87874648" CDS 317..4090 /locus_tag="B0T23DRAFT_377316" /note="NRDE-2, necessary for RNA interference-domain-containing protein; NRDE-2, necessary for RNA interference-domain-containing protein" /codon_start=1 /product="NRDE-2, necessary for RNA interference-domain-containing protein" /protein_id="XP_062694154.1" /db_xref="GeneID:87874648" /db_xref="InterPro:IPR013633" /db_xref="JGIDB:Neuhi1_377316" /translation="
MSSNEVKRRAVPKFTSFAPATPAPKADSEKRSLTLRGSSRDREKKEDRERRHRRRDYDRDRHKDDSDSERERERERGRDRDRHHARQHDRHHSRHHDRDRHHRRRSASPASQIKEARHPLHKPSSTSQDTDLFYFDKSEDPLIFRYGGNERSKIPSYRRFGAGKFIGSPGYLSVSFQGSKEVFTIRSPGEGRGNGSVFGDKTLMAWARAKGAKAKHIKPGVGGEYGESAAEDGDYISLEPPRKRQRTDRSPAPEDGDKTPDYRSIYGKAKSEDEDSDGDETLSDSESENKVGSHLSDMSSAKKRSLELHRQVKNSPQDTKAWLELIGLQDTLFMEHQLEGQVITGDQVKALAELKLSLYEEALPHALDISLKETLLNGMMREGEKVWDPKQLAKRWEETTKTNPDSFLLWVSRLNYELSQVATFTYDEPKTFMVTKMQFLNRTLATASSEKNVVMLCSQLIYVFVRLTCYLRDSGYIELAVAAWQATLELNFCRPKNASNFHSVIEDFSDFWESEVPRIGEGNAKGWRHFVEDVGAMTDPPEAIPREPSGPPQTRDPFEAWALLERQEAAKARMPARTLDEGTDDDPFRIVMFSDIKDLVLWIPSQMLPQAQLQLVDAFLTFCRLPNTAKSSALKDPFIAPRGQAFESLLDQIGGHDVLNSVEIERKPPLFGQQGGNMALSPELLFSGQDWFQYLGQWSSLSIDADGDVRPPWVLETLHYLVLTCGIEQLAEYYLALAWLSEPLGVKKVAKGLLKRYSSNTRLYNAYAMIEFANGNIGIAEKVLLSATSQSSPDSQLLWNTWVWMHLNAGNMQLALLRLLSSVDITLDVEKGLPVSPALLLKARAHFSTKRDYSLSSHQTEPALQYAESLALLDYLSRTENSSGSTKYSSQGNITSALANIQSFTTELSSLGHQTLHERLLQIGARLLYHHANHGPYKPSTLRQYLHEFLRLFPHNTLFLSLLAWAEQSTLRISDPVRSIVRESLSSTRDKDTSSSEGSHTPVPIPTYRFAIEYELLSGAGLRPVGAATIHSTKAAFEAAVSDPSACRYNVDIWIGYIRFLTQVYFHALSLSYGSSATAGTRERGIKKADAQAASTLKALKDVFYRAVAACPWSKKLYMAAFPAGSTAEPGEPGEGGGSALVKALSSGELRAVFGTMVAKGLRVHVDFEGFERKWREKEEDEKRVGREKEKVEKEEKEESERRARLERERRWDLEDSLHKNRHMDSDRGERGGGQYEKYNDRERSREWDRRREGGRR"
ORIGIN
tagtgtaggtaagctccgtgccggtaaaagtcaggtgggtccgcttggggtccacccgttaggccatagcgttcacgggcttgtcacctctcactgtgccactcctacagtattgtaggtagacctcagacccaacactcccgtctgttaccgctggcaactgcaaatcatccactgccagctgtctcgtcttcatcatctaaccttctttacctttgatggcatcgcgtcgaccaatattgcggacagaagccttcgaaacccagtagacctgattggaacttatggaggaaattcgggagtcctacgaatcgccatgtcgtccaacgaggtgaaacgccgcgcggtgcccaagttcacctcattcgcaccagccacaccagcccccaaggcagactccgaaaaacgatcattgacactccgaggctcctcacgagatcgggagaagaaggaggaccgtgaaagacgacatcgccggagggattatgatcgggaccgtcacaaggacgacagtgatagcgagagggagagggaaagagaaagagggagggacagagacaggcatcatgccaggcagcatgacagacatcacagtcgacaccatgatcgagatcgccatcaccgcagacggtcagccagccctgcctcacagatcaaagaagcccgtcatccgctccacaagccatcatctaccagccaggataccgatctgttttactttgacaaaagtgaggaccccttgattttccgttatggcggaaatgagcgctcaaaaataccatcttatcgccgctttggtgctggaaaattcatcggctccccagggtatctctccgtttctttccaaggttcgaaggaagtcttcaccatccgaagcccgggcgagggtaggggcaacggttcggtcttcggagacaagactttgatggcctgggccagagccaagggagcgaaagcaaagcacatcaagcctggtgtgggtggtgaatatggagaatcagcagcagaggatggcgactacatatctctcgagcctcccagaaaacggcaacgtaccgatcgatcaccagcgcctgaggacggtgacaagacaccagattacaggtccatctatggcaaagccaagtcagaggatgaggactcggatggtgatgagacattgtccgattcagagagcgaaaataaggtgggcagtcatctttcggacatgtcaagcgccaagaagagatctcttgaactccatcgccaggtcaaaaatagcccccaggacaccaaagcttggctcgagttgattgggttgcaagacaccctcttcatggagcatcaacttgagggccaggtcataactggggatcaggtaaaagccctggccgaactcaagttgtctctctatgaagaggcccttccccatgcacttgacatctctttgaaggagaccttgttgaacggaatgatgcgcgagggcgaaaaggtgtgggatcccaagcagcttgcgaagcgctgggaagagaccaccaagaccaaccccgacagcttcttgttatgggtttcacgactaaactatgagctttcgcaggtcgcaactttcacatacgatgaaccgaagaccttcatggtgaccaagatgcaattcctcaaccgcacattagcaactgcatcttcggaaaagaatgttgtcatgctgtgtagccagctgatttacgtgttcgtcagattaacgtgctaccttcgggactctggctacattgagctggctgtggctgcatggcaagcaactctagaactgaacttctgccggcccaagaacgcttcgaacttccattcagtcattgaggacttttctgacttctgggaaagcgaagtaccacgaataggtgagggcaatgccaaaggttggcgtcactttgttgaagacgtgggcgctatgaccgacccaccagaagcaataccaagggagccatcaggacctcctcagacgagggatccatttgaggcatgggcgttgctggaacgacaagaggcggcaaaggcacgaatgccggctcgtaccctggacgaaggaacagatgatgacccattccgaatcgtcatgttttcggatatcaaggatttggtgttgtggatcccatcccaaatgctcccgcaggcacagcttcagctagttgatgcctttttgacattctgtcgacttccaaataccgcgaaatcttctgcgctgaaagatcccttcattgcgcctcgtggacaagcctttgaatctttgctggatcaaataggcggccacgatgttttgaattcggtggagatagagcgaaagccaccattattcgggcaacaaggtggaaacatggctctctcaccagaactccttttttccgggcaggactggtttcagtatctcggtcaatggtctagtctcagcatagatgcggatggtgatgttaggcctccctgggtactcgagacactccattatctggtccttacttgcggtattgaacaactggccgagtactatctggcattggcatggcttagtgaacctttgggggttaagaaggtcgccaaggggctgctgaaacggtactcatccaacacgagactatataatgcctacgccatgattgaatttgcaaacggaaacattggcattgccgaaaaggtactactctcggcaacaagccaaagttcccccgatagccagctattatggaacacctgggtatggatgcacctgaacgcaggaaacatgcaactcgctctgcttcggctgttgtcttctgtggacattactctagacgtggagaagggcttgccggtatcgccagctctgctcctaaaagcaagagctcacttttctaccaagcgagactactccctctcttctcaccaaacagaaccggcactccaatatgccgaaagccttgctcttctcgactacctctcaagaaccgagaacagcagcggcagcacaaagtactcaagccaaggcaacatcacctctgctctcgcaaacatacaatctttcactaccgagctgagctccctaggtcaccaaaccctccacgaacgactcctccaaatcggcgctcgccttctctaccaccacgcaaatcacggcccttacaagccttccaccctacgccaatatcttcacgaattcctccgtctcttcccccacaacacgctctttctctcccttctcgcctgggcagagcaatccactctccggatcagcgaccccgtccgctccattgtgcgcgaaagcttgtcctcaaccagagacaaggacaccagcagctcagaaggtagtcacacaccagtaccaatccccacctaccgtttcgcaatcgaatacgagctcctctccggcgccggcctcaggcccgtcggcgccgcaacaatccattccaccaaagccgctttcgaagccgccgtttcggatccctctgcatgcagatataatgtggacatatggatcggttacattcgattcttgacgcaggtgtactttcatgcactttctttatcctacggatcctctgccacggcagggacccgggagcgtggtataaagaaggcggatgcgcaggcggcgagcacccttaaggctcttaaggatgtgttttacagagccgttgccgcctgtccgtggagcaagaagctttatatggcggcgttccctgctggttctactgcagagcctggagagcctggtgagggcgggggcagcgcattggtgaaagccttgagcagtggggagttgagggcggtgtttgggacgatggttgcgaaggggttgagagtgcatgttgattttgaggggtttgagaggaagtggagggaaaaggaagaagacgaaaagagggtggggagggagaaggagaaggttgagaaggaggagaaggaggaatcggagaggagagcgaggctggaacgggagagacgatgggatttagaagattcgcttcataaaaatcgccatatggactcggataggggtgaaaggggagggggacaatacgaaaagtacaatgatcgtgagaggagtagagagtgggatagacggagggagggagggaggagatgattgctgattctactggagcaaaagtagcaatggcggccgtagcaggcaccgcagtagacataacgggaatttgtcaacttggtatggctgacttggccgcatgtgcctcagttggaccaattgtaacaagcgtaagtagttaggtatcttgaaaaagaaaataattcatagtctgaatggtgtgggaggaagataggtaactgcaggtgcccttttcggctccttgatctaaacgacgatggatattct
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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