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2024-10-04 19:52:12, GGRNA.v2 : RefSeq release 225 (Jul, 2024)

LOCUS       XM_062837026            4339 bp    mRNA    linear   PLN 06-FEB-2024
DEFINITION  Neurospora hispaniola NRDE-2, necessary for RNA
            interference-domain-containing protein (B0T23DRAFT_377316), mRNA.
ACCESSION   XM_062837026
VERSION     XM_062837026.1
DBLINK      BioProject: PRJNA1072703
            BioSample: SAMN06296510
KEYWORDS    RefSeq.
SOURCE      Neurospora hispaniola
  ORGANISM  Neurospora hispaniola
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae;
            Neurospora.
REFERENCE   1  (bases 1 to 4339)
  AUTHORS   Hensen,N., Bonometti,L., Westerberg,I., Brannstrom,I.O.,
            Guillou,S., Cros-Aarteil,S., Calhoun,S., Haridas,S., Kuo,A.,
            Mondo,S., Pangilinan,J., Riley,R., LaButti,K., Andreopoulos,B.,
            Lipzen,A., Chen,C., Yan,M., Daum,C., Ng,V., Clum,A., Steindorff,A.,
            Ohm,R.A., Martin,F., Silar,P., Natvig,D.O., Lalanne,C., Gautier,V.,
            Ament-Velasquez,S.L., Kruys,A., Hutchinson,M.I., Powell,A.J.,
            Barry,K., Miller,A.N., Grigoriev,I.V., Debuchy,R., Gladieux,P.,
            Hiltunen Thoren,M. and Johannesson,H.
  TITLE     Genome-scale phylogeny and comparative genomics of the fungal order
            Sordariales
  JOURNAL   Mol Phylogenet Evol 189, 107938 (2023)
   PUBMED   37820761
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4339)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 4339)
  AUTHORS   Haridas,S., Hensen,N., Bonometti,L., Westerberg,I.,
            Brannstrom,I.O., Guillou,S., Cros-Aarteil,S., Calhoun,S., Kuo,A.,
            Mondo,S., Pangilinan,J., Riley,R., LaButti,K., Andreopoulos,B.,
            Lipzen,A., Chen,C., Yanf,M., Daum,C., Ng,V., Clum,A.,
            Steindorff,A., Ohm,R., Martin,F., Silar,P., Natvig,D., Lalanne,C.,
            Gautier,V., Ament-velasquez,S.L., Kruys,A., Hutchinson,M.I.,
            Powell,A.J., Barry,K., Miller,A.N., Grigoriev,I.V., Debuchy,R.,
            Gladieux,P., Thoren,M.H. and Johannesson,H.
  CONSRTM   Lawrence Berkeley National Laboratory
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUN-2023) DOE Joint Genome Institute, 1 Cyclotron
            Road, Berkeley, CA 94720, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_026944408).
            
            ##Metadata-START##
            Organism Display Name :: Neurospora hispaniola FGSC 10403 v1.0
            ##Metadata-END##
FEATURES             Location/Qualifiers
     source          1..4339
                     /organism="Neurospora hispaniola"
                     /mol_type="mRNA"
                     /strain="FGSC 10403"
                     /db_xref="taxon:588809"
                     /chromosome="Unknown"
                     /geo_loc_name="Haiti: Leogane"
     gene            1..4339
                     /locus_tag="B0T23DRAFT_377316"
                     /db_xref="GeneID:87874648"
     CDS             317..4090
                     /locus_tag="B0T23DRAFT_377316"
                     /note="NRDE-2, necessary for RNA
                     interference-domain-containing protein; NRDE-2, necessary
                     for RNA interference-domain-containing protein"
                     /codon_start=1
                     /product="NRDE-2, necessary for RNA
                     interference-domain-containing protein"
                     /protein_id="XP_062694154.1"
                     /db_xref="GeneID:87874648"
                     /db_xref="InterPro:IPR013633"
                     /db_xref="JGIDB:Neuhi1_377316"
                     /translation="
MSSNEVKRRAVPKFTSFAPATPAPKADSEKRSLTLRGSSRDREKKEDRERRHRRRDYDRDRHKDDSDSERERERERGRDRDRHHARQHDRHHSRHHDRDRHHRRRSASPASQIKEARHPLHKPSSTSQDTDLFYFDKSEDPLIFRYGGNERSKIPSYRRFGAGKFIGSPGYLSVSFQGSKEVFTIRSPGEGRGNGSVFGDKTLMAWARAKGAKAKHIKPGVGGEYGESAAEDGDYISLEPPRKRQRTDRSPAPEDGDKTPDYRSIYGKAKSEDEDSDGDETLSDSESENKVGSHLSDMSSAKKRSLELHRQVKNSPQDTKAWLELIGLQDTLFMEHQLEGQVITGDQVKALAELKLSLYEEALPHALDISLKETLLNGMMREGEKVWDPKQLAKRWEETTKTNPDSFLLWVSRLNYELSQVATFTYDEPKTFMVTKMQFLNRTLATASSEKNVVMLCSQLIYVFVRLTCYLRDSGYIELAVAAWQATLELNFCRPKNASNFHSVIEDFSDFWESEVPRIGEGNAKGWRHFVEDVGAMTDPPEAIPREPSGPPQTRDPFEAWALLERQEAAKARMPARTLDEGTDDDPFRIVMFSDIKDLVLWIPSQMLPQAQLQLVDAFLTFCRLPNTAKSSALKDPFIAPRGQAFESLLDQIGGHDVLNSVEIERKPPLFGQQGGNMALSPELLFSGQDWFQYLGQWSSLSIDADGDVRPPWVLETLHYLVLTCGIEQLAEYYLALAWLSEPLGVKKVAKGLLKRYSSNTRLYNAYAMIEFANGNIGIAEKVLLSATSQSSPDSQLLWNTWVWMHLNAGNMQLALLRLLSSVDITLDVEKGLPVSPALLLKARAHFSTKRDYSLSSHQTEPALQYAESLALLDYLSRTENSSGSTKYSSQGNITSALANIQSFTTELSSLGHQTLHERLLQIGARLLYHHANHGPYKPSTLRQYLHEFLRLFPHNTLFLSLLAWAEQSTLRISDPVRSIVRESLSSTRDKDTSSSEGSHTPVPIPTYRFAIEYELLSGAGLRPVGAATIHSTKAAFEAAVSDPSACRYNVDIWIGYIRFLTQVYFHALSLSYGSSATAGTRERGIKKADAQAASTLKALKDVFYRAVAACPWSKKLYMAAFPAGSTAEPGEPGEGGGSALVKALSSGELRAVFGTMVAKGLRVHVDFEGFERKWREKEEDEKRVGREKEKVEKEEKEESERRARLERERRWDLEDSLHKNRHMDSDRGERGGGQYEKYNDRERSREWDRRREGGRR"
ORIGIN      
tagtgtaggtaagctccgtgccggtaaaagtcaggtgggtccgcttggggtccacccgttaggccatagcgttcacgggcttgtcacctctcactgtgccactcctacagtattgtaggtagacctcagacccaacactcccgtctgttaccgctggcaactgcaaatcatccactgccagctgtctcgtcttcatcatctaaccttctttacctttgatggcatcgcgtcgaccaatattgcggacagaagccttcgaaacccagtagacctgattggaacttatggaggaaattcgggagtcctacgaatcgccatgtcgtccaacgaggtgaaacgccgcgcggtgcccaagttcacctcattcgcaccagccacaccagcccccaaggcagactccgaaaaacgatcattgacactccgaggctcctcacgagatcgggagaagaaggaggaccgtgaaagacgacatcgccggagggattatgatcgggaccgtcacaaggacgacagtgatagcgagagggagagggaaagagaaagagggagggacagagacaggcatcatgccaggcagcatgacagacatcacagtcgacaccatgatcgagatcgccatcaccgcagacggtcagccagccctgcctcacagatcaaagaagcccgtcatccgctccacaagccatcatctaccagccaggataccgatctgttttactttgacaaaagtgaggaccccttgattttccgttatggcggaaatgagcgctcaaaaataccatcttatcgccgctttggtgctggaaaattcatcggctccccagggtatctctccgtttctttccaaggttcgaaggaagtcttcaccatccgaagcccgggcgagggtaggggcaacggttcggtcttcggagacaagactttgatggcctgggccagagccaagggagcgaaagcaaagcacatcaagcctggtgtgggtggtgaatatggagaatcagcagcagaggatggcgactacatatctctcgagcctcccagaaaacggcaacgtaccgatcgatcaccagcgcctgaggacggtgacaagacaccagattacaggtccatctatggcaaagccaagtcagaggatgaggactcggatggtgatgagacattgtccgattcagagagcgaaaataaggtgggcagtcatctttcggacatgtcaagcgccaagaagagatctcttgaactccatcgccaggtcaaaaatagcccccaggacaccaaagcttggctcgagttgattgggttgcaagacaccctcttcatggagcatcaacttgagggccaggtcataactggggatcaggtaaaagccctggccgaactcaagttgtctctctatgaagaggcccttccccatgcacttgacatctctttgaaggagaccttgttgaacggaatgatgcgcgagggcgaaaaggtgtgggatcccaagcagcttgcgaagcgctgggaagagaccaccaagaccaaccccgacagcttcttgttatgggtttcacgactaaactatgagctttcgcaggtcgcaactttcacatacgatgaaccgaagaccttcatggtgaccaagatgcaattcctcaaccgcacattagcaactgcatcttcggaaaagaatgttgtcatgctgtgtagccagctgatttacgtgttcgtcagattaacgtgctaccttcgggactctggctacattgagctggctgtggctgcatggcaagcaactctagaactgaacttctgccggcccaagaacgcttcgaacttccattcagtcattgaggacttttctgacttctgggaaagcgaagtaccacgaataggtgagggcaatgccaaaggttggcgtcactttgttgaagacgtgggcgctatgaccgacccaccagaagcaataccaagggagccatcaggacctcctcagacgagggatccatttgaggcatgggcgttgctggaacgacaagaggcggcaaaggcacgaatgccggctcgtaccctggacgaaggaacagatgatgacccattccgaatcgtcatgttttcggatatcaaggatttggtgttgtggatcccatcccaaatgctcccgcaggcacagcttcagctagttgatgcctttttgacattctgtcgacttccaaataccgcgaaatcttctgcgctgaaagatcccttcattgcgcctcgtggacaagcctttgaatctttgctggatcaaataggcggccacgatgttttgaattcggtggagatagagcgaaagccaccattattcgggcaacaaggtggaaacatggctctctcaccagaactccttttttccgggcaggactggtttcagtatctcggtcaatggtctagtctcagcatagatgcggatggtgatgttaggcctccctgggtactcgagacactccattatctggtccttacttgcggtattgaacaactggccgagtactatctggcattggcatggcttagtgaacctttgggggttaagaaggtcgccaaggggctgctgaaacggtactcatccaacacgagactatataatgcctacgccatgattgaatttgcaaacggaaacattggcattgccgaaaaggtactactctcggcaacaagccaaagttcccccgatagccagctattatggaacacctgggtatggatgcacctgaacgcaggaaacatgcaactcgctctgcttcggctgttgtcttctgtggacattactctagacgtggagaagggcttgccggtatcgccagctctgctcctaaaagcaagagctcacttttctaccaagcgagactactccctctcttctcaccaaacagaaccggcactccaatatgccgaaagccttgctcttctcgactacctctcaagaaccgagaacagcagcggcagcacaaagtactcaagccaaggcaacatcacctctgctctcgcaaacatacaatctttcactaccgagctgagctccctaggtcaccaaaccctccacgaacgactcctccaaatcggcgctcgccttctctaccaccacgcaaatcacggcccttacaagccttccaccctacgccaatatcttcacgaattcctccgtctcttcccccacaacacgctctttctctcccttctcgcctgggcagagcaatccactctccggatcagcgaccccgtccgctccattgtgcgcgaaagcttgtcctcaaccagagacaaggacaccagcagctcagaaggtagtcacacaccagtaccaatccccacctaccgtttcgcaatcgaatacgagctcctctccggcgccggcctcaggcccgtcggcgccgcaacaatccattccaccaaagccgctttcgaagccgccgtttcggatccctctgcatgcagatataatgtggacatatggatcggttacattcgattcttgacgcaggtgtactttcatgcactttctttatcctacggatcctctgccacggcagggacccgggagcgtggtataaagaaggcggatgcgcaggcggcgagcacccttaaggctcttaaggatgtgttttacagagccgttgccgcctgtccgtggagcaagaagctttatatggcggcgttccctgctggttctactgcagagcctggagagcctggtgagggcgggggcagcgcattggtgaaagccttgagcagtggggagttgagggcggtgtttgggacgatggttgcgaaggggttgagagtgcatgttgattttgaggggtttgagaggaagtggagggaaaaggaagaagacgaaaagagggtggggagggagaaggagaaggttgagaaggaggagaaggaggaatcggagaggagagcgaggctggaacgggagagacgatgggatttagaagattcgcttcataaaaatcgccatatggactcggataggggtgaaaggggagggggacaatacgaaaagtacaatgatcgtgagaggagtagagagtgggatagacggagggagggagggaggagatgattgctgattctactggagcaaaagtagcaatggcggccgtagcaggcaccgcagtagacataacgggaatttgtcaacttggtatggctgacttggccgcatgtgcctcagttggaccaattgtaacaagcgtaagtagttaggtatcttgaaaaagaaaataattcatagtctgaatggtgtgggaggaagataggtaactgcaggtgcccttttcggctccttgatctaaacgacgatggatattct
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]