2024-09-08 08:57:39, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_062750209 6970 bp mRNA linear INV 05-FEB-2024 DEFINITION PREDICTED: Saccostrea cucullata vascular endothelial growth factor receptor 3-like (LOC134268003), partial mRNA. ACCESSION XM_062750209 VERSION XM_062750209.1 DBLINK BioProject: PRJNA1071555 KEYWORDS RefSeq. SOURCE Saccostrea cucullata (small rock oyster) ORGANISM Saccostrea cucullata Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Saccostrea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026925073) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_032062105.1-RS_2024_01 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 01/31/2024 ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..6970 /organism="Saccostrea cucullata" /mol_type="mRNA" /isolate="Sc308-1" /db_xref="taxon:36930" /chromosome="Unknown" /tissue_type="Abductor muscle" /geo_loc_name="Australia: WA, Karratha" /collection_date="2022-03-29" gene <1..6970 /gene="LOC134268003" /note="vascular endothelial growth factor receptor 3-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:134268003" CDS <1..1427 /gene="LOC134268003" /codon_start=3 /product="vascular endothelial growth factor receptor 3-like" /protein_id="XP_062606193.1" /db_xref="GeneID:134268003" /translation="
CTDREQMMALLSELKILIHVGQHLNIVNLLGAVTKDIRYGELYVIVEYCHFGNLRSYLLKHKEEFRDVMEDYMDPAHQKKREAAREAAANKPYYLNKAQIENTADLVGPPLTTKNLICWSFQVARGMEYLASKKYIHRDLAARNVLLAEDNIVKICDFGLAKDLYNNPEYLKKTDGPVPVKWMAIESLTHRLYTTKSDVWSYGVFLWELFSLGGSPYPGVEINEKFIGLLQDGYRMEKPRYATDEMYKVMQATWRDDPEDRPTFTQLANIMGDFLEENVKQYYLDLNEPYLKMVDLEGGACGGPESEGYLKMSDRDKKSDYLKMGLAPPPPVDQEEYDGGVSYVNEKKWNKKKEKGDSMELQPLTKSMEEEEEVQLRKKDRENSPSNTNMRVDVHRSDDTDSGHSSTYAPGTPPDVGNDGYLVPKMGPDQTQVFVLKNKSSPAKNKSKCSEFTKDYHDPPPTYSTVLQDSDIDV"
polyA_site 6970 /gene="LOC134268003" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
attgtactgacagagaacaaatgatggcgttattgtcagaactcaagattctcattcatgtgggacaacatcttaacattgtcaacttactgggggccgtcaccaaagatattagatatggtgagctgtatgtgattgtggaatactgtcatttcggaaaccttcggtcctatctactgaaacataaggaagagttccgagacgtaatggaggactacatggaccctgcccatcagaaaaaacgtgaggcagcccgagaggcagccgccaataagccgtactacttaaacaaggctcagatagagaacaccgccgacctagtggggcctccactgaccactaaaaacctcatctgctggtcattccaggtggcccgagggatggagtacctggcctccaaaaaatatatacacagagatctggcagcaagaaacgttcttttagctgaggacaacatcgtcaaaatatgtgactttgggttagccaaggatttgtacaataatccagaatatctaaagaaaacagatggaccagttcctgtgaagtggatggctattgaatctctaactcacagactgtacaccacaaagagtgacgtgtggtcatatggtgtctttctatgggagttattttctctgggtggtagtccataccctggggtggaaattaacgagaagtttattgggctccttcaggatggatacagaatggagaagccacgatatgccaccgatgaaatgtacaaggtcatgcaggcgacctggagggatgacccagaggacagacctacttttacacaactcgccaacatcatgggcgatttcctggaagaaaatgtcaaacagtattacttggatctgaatgagccgtatcttaagatggtggaccttgagggcggggcttgtgggggaccagagagtgagggctaccttaaaatgagtgacagagacaaaaagtcagactaccttaaaatggggctggcccctcccccaccggtggaccaggaagagtatgatggaggtgtgtcttatgtgaatgagaaaaaatggaacaaaaagaaggagaagggagattctatggagcttcagcctctgacaaaatctatggaggaagaggaggaggtacaactccgtaaaaaagatcgggaaaattctccctccaacacaaacatgcgggtggatgttcacagaagtgatgatacagatagcggacattccagtacatacgcaccgggcacaccgccagacgtcggaaacgacggctaccttgtaccaaagatgggaccagatcaaactcaggtgtttgtattgaagaacaaatcgagtccagctaaaaataaatctaagtgtagtgagtttacgaaggattatcacgaccccccgcccacgtactcaacagtattacaggacagtgatattgatgtctgatgctaaagctgactccaagaatcagccttgtgttgtcttttatttactggtattgcttcttaatgagtgcaagaaacccttaaatttggcatggaaatttcctttttgaaacattctcctacttttttacaacaaattctgtgcctgatcaaagcaacccgaatatatctatgtttttactattataagaatggactagtcctgaattaattaagatttttgcttgtagatagacatgtatcaactactgactgtaaatactgtatagtagagtagtatctaatgaaactgccgaacttgttactagcattatcagcattattttgtacactgtaggttgttaagatctcctgtagcataattcattttgaatatctataatgatattgttttattgtctgaatacattttacataatggcatatagcacactgggaaaaggaaggggaattttcattgtgttcaatttgacttttatcaaagattatccaatggcattgaacaatctggaataagtgagcagaaacatttttatcaattagaaaatgattcgctgtttcttggaaaaataaattgacatacttacataatggaaacatacagtagatggagatgtcaggaatgaaaaaaagatttttagattattaacttgttattaaatcttgtaaatgtatattaactcttatcagttattgcacctgatgtatttggtagattacttttttcatatacaagtaccgtaccggttttgtatggtaattaagctttctgctttcacacaagtatttgttgtttacagcaaatttgttttttcatatatatgtaccccggtacacacctgttgtttacagtaagtttgtttttatttgtcttacaagtacatgtatatgataagattgttttccttataagtaattgttgtatatggtttagattgtttttaattacaagaatatgttgtatacagtaagactggttttatctacaataacctgttgtaaagggtaacattgtttttccacacaagcacctgttgttgattgttgaaacaaaaaccagtagtctaatatcattagattttattagctttaactgctttttaactttacaatactgtggttttattttagaatctcacatttgctttgagactgtcaccatatgcatatcccaaattcttccttttcttgccattttgaatcagtagttgcttatattaattgtgtctaaaattttacaacacactatatgttttgctatttatgcattttgagaaccttttaccagtgcctcatcttgtttttatgacttttgtatggtattttattcgctcatattttaggatttctgtatggggttttacaaactgttttgaaggacttatggggttttattagctcaagttttataggaaattctgtaaggtattcattagcccagtttcataggaattctttaaagggattttattggctcagttttaaggaattctatgtgggattttatcagctcacttttataggatttctgtatgggatttttagctcttctgagccaaaggctcaaagagctaatgctatggccatttgtgcggtgtgcgtcgtgcggtgtgcgttaactttttagaatatgggccataactcaagaaccccttggccaattattgtcaaatttgtcacagggtatccttggcccaagagctaccatttatactaaaattaggggtgggaccctaaaacaaggggagataatcacgaaaataaaaccaaaagtactggttgctaaaaaatcttcttctccagaaccaccaggcagatactcaccaaacttacatacaagggtcagaatatgttgaagattaaaaattgttcaaggcatgaccctggggcaaagggcgtggtctcaaggtcacttcaaaattgaccaaaatttacatttattaaaaacgttgatattttgcttactataaagagtaggatcatcaaatcttgtaagttgatgcatctcaggacttgacatcatgttaatacaaaagtaggtcacggtgacctactttttagctcacctgagccgaaggctcaagtgagcttttctgatcacattttgttcgtcgtccgtctgtccgtctgtctgtctgtctgtccgtctgtaaacttttcacattttcgacttcttctcaagaaccgctgggccaatttcaaccaaacttgccacaaattatccttgggtgaaggggattcaagtttgttcaaatgaagggccacgccctcattcaaggggagataattgggaattaatgaaaatttaatggtatgttttaaaaatcttcttctaaagaaccactgtgccaggaaagatgaaacttatggggaaacatcctcaggtagtgtagattcaagtttgttcaaatcatgacccccggggtagggcggggccacaatggccgaccaaagttttacatagaaaaatataggaaaattttttaaaaatcttcttctcaagaatagcaaagccataattgatcatatttatatggaagcattgtcatgcagtgtagattcaaatttgttcaaatgatgatccccaggggtagggcggggccacaattaatggccgacataagttttacatagaaatatataggaaaattctttaaaaaacttcttctcaagaacagcaaagccataattgatcatatttatattaaagcatcctcaggtaatgtagattcatatttgttcaaatgatgacctccaggggtagggcgaggccacaatggccgaccaaagttttacatagaaatatataggaaaattctttaaaaatcttcttctcaaatatagcaaagccataattgatcatatttatattaaagcatcgtcagatagtgtagattcaagtttgttcaaatcatgacccccgggggttaagggcggggccacaatggccgaccaaagttttacatagacatatataggaaaattctttaaaaatcttcttctcaagaatagcaaagccataattgatcatatttatatggaagcatcgtcagatagtgtagattcaagtttgttcaaatgatgacccccaggggtagggcggggccacaatggccgaccaaagttttacatagaaaaatataggaaaattctttaaaaatcttcttctcaagaatagcaaagccataattgatcatatttatatggaagcatcatcagatagtgtagattcaagtttgttcaaatcatgacccccgggggtagggcggggccacaatggccgaccaaagttttatatagaaatatataggaaaattctttaaaaatcttcttctcaagaacagcaaagccataattgatcatatttatatggaagcatcgtcaggtagtgtagattcaagtttgttcaaatcatgaccacgggggtggggcggggccacaatggcagaccaaagtttaacatagaaatatgtaggaaaattctttaaaaatcttcttctcaagaacagcaaagccatgattaatcatatttatatggaagcgtcgtcaggtagtgtagattcaagtttgttcaaatcaaggccccggggggtaggggcggggccacaatggccgaccaaagttttacatagacataggaaaattctttaaaaatcatcttctcaacaagaatagcaaaaccatgattggtcatgggactacttttggatttaaacttttcaataataaaccaatttctactttttcctagccacagtgctcaggtgagcgatgtggcccatgggccttttgttaaattttacgggcttttgttttcgaattgatttagaggcatattttggacactttaaggcctatgatcataaaactttgtcagttggttcatcttgggtccacaaacaacatcaactaaaaagtaggtcatcgtgacctactttttgaattttatggctaatcttttctaaaacatttaatcccattatttcagacaccgagaggtttagaatctccaaatcttgtaagttgatgcatctagaggcgttaaaacatatttattaaaaagtaggtcactgtgacctactttttgaactttgcaggcatttgtttttaaattgtttaaaaggcatattttgaatactattagacctatgaccatcaaattttgtcagttgatgcatctttggtcttcagaaaatgtcgaccaaaaagtaggtcactgtgacatactttcgacattttatggctagatttaagtatctcgggtactaattggcttagaatcattaaaatttgtcagttgatgcatcttgggttttcggagattaacgaccaaaaagtaggtcacagtgacctacttttgacattttatggctatattttagtatctcaggtacttattggcttagaatcatcaaactttgtcattcgatgcatctttattttatttcattttacgggttttcggagcatgtcgaccaaaaagtaggtcacagtgacctctttttgacattttatggctagttttatgtatctcaggtgctaattggtttagaatcatcaaattttgtcacttgatgcatcttagattttcggagcatgttgaccaaaaagtaggtcacggtgacccacttttgaatatctcagatactgattggctcagaatcatcaaactatgtcagtagatgcagcttgggttttcggagaatgtcgaccaaaaagtaggtcacattgacctacttttgtcattttatggctaaatttaggtatttcgggtacttattggtttgaaatcatcaaactttgttatttgatgcaccttgggttcttggagaatgatgatcaaaatataggtcacagtgacctacttgtgacatttatggctatatttaagtattctagggtacttattggcttagaattgtcaaactttgtcagtttatgcaccttgggtttttggagaatgttgaccaataagtaggtcactgtgacccacttttaaatatctcaagtacttattggcttagaatcaacaatcttggtcaattaatgcatcttgtgccctcagaaaatttcaatcaaaaagtaggtcaccatgacctacttatagtattttatagttacatgtaaatatcttcagccctaactggctaagaatcatcaaactttgtcagttgatgcatcttgggtcttaggatagattgtataatttatcagaagagcgattcaaggcccttgggcctcttgtattaatccagtttgatctcttgggagattttgtttgctgttttgaaggctgaaataatggcaattcaaaccttatccagagaccagcacatacatatgtacaattcaagatttcaaaaatttgaaagtattcttctctttgttatatacatatcaaagataagccataataatagtgcaatagaccattcttacatagttcatcttacagaagtcattgaataatagtcttaccatataaataatcaggtgtttatacagtacctattgtacatatatctaataaagtcagcacacatt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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