2024-09-08 08:51:23, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_062713707 2941 bp mRNA linear INV 05-FEB-2024 DEFINITION PREDICTED: Saccostrea cucullata DNA repair protein RAD51 homolog 4-like (LOC134231744), mRNA. ACCESSION XM_062713707 VERSION XM_062713707.1 DBLINK BioProject: PRJNA1071555 KEYWORDS RefSeq. SOURCE Saccostrea cucullata (small rock oyster) ORGANISM Saccostrea cucullata Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Saccostrea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026931197) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_032062105.1-RS_2024_01 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 01/31/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2941 /organism="Saccostrea cucullata" /mol_type="mRNA" /isolate="Sc308-1" /db_xref="taxon:36930" /chromosome="Unknown" /tissue_type="Abductor muscle" /geo_loc_name="Australia: WA, Karratha" /collection_date="2022-03-29" gene 1..2941 /gene="LOC134231744" /note="DNA repair protein RAD51 homolog 4-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:134231744" CDS 28..966 /gene="LOC134231744" /codon_start=1 /product="DNA repair protein RAD51 homolog 4-like" /protein_id="XP_062569691.1" /db_xref="GeneID:134231744" /translation="
MSAIRKNLCSHITEDVAGKLKSAGIKTVVDFVRMDMEHIAQETTIPYKDLVVIRRLLLAQFSTFPVNCADFYQTAIASSSIIPTPVNKLNELLEGGLYSSEITEVAGEISSGKTQFCLSCCVSAVSTAKQNIVYIDTCGGFSADRLAGIAEAQYGEEQLEHILQSVKVVEAHDIFQLISALETVKENMIKKDDPFYDLVKLIIVDSVTAVIYPSLGGQQMDGHGLMVQLSLKIKRLAADFSLAVLIVNNVTGDGKVSLGKTWSHVPHNRLLLSLARDQKPNVREVVLVKSSKSATGGKIMLEITEKGTEDIK"
ORIGIN
aaaactaatttggcgccaaaaaacaaaatgtctgccattcgcaagaatctatgttcgcacataacagaagatgttgctggtaaacttaaatcagcaggtattaaaacagttgtggattttgtaaggatggacatggaacatattgctcaagagactacgataccgtataaggatcttgtagtcatcagaagacttctactggcccagttttctacattcccagtgaattgtgcggacttctatcagacagccattgcctcatcatctatcataccaacaccagttaataagttaaatgaattgctggaaggtggactgtactcgtcagaaattacagaagtagctggggaaatatcgtcaggtaaaacacagttttgcctgagttgctgtgtttccgcggtgagtacagcgaagcagaatattgtgtacattgacacgtgtggcgggttctctgcggacagacttgcaggaatcgctgaggctcagtacggagaggaacagttagagcatatcctgcagtcagtgaaagttgtggaggcacatgacatatttcaacttatttcagcattggaaacagttaaggaaaatatgattaaaaaggatgacccattttatgatctggtcaagctgatcattgtggacagtgttacagcagttatctacccctccctgggtggacagcagatggatggacacggtcttatggttcagctctctctgaaaatcaagcgtttggctgcagacttcagcttagctgtactgattgttaacaatgtaacaggggatggaaaagtcagcctgggtaagacttggtcacatgtcccccacaatagactgctcctctcacttgccagggaccagaaaccaaatgttagagaggtggtgttggtgaaaagttcaaagtcggcaacaggtgggaagatcatgttagaaattacagaaaaggggactgaagacattaaatgaacctctttttaacacactgcacctctgtgtgcatccttaagcaggacagttgtggatgccaagctgccagagtctcgcttcatcaatagatgtccaaagagcccaactatagtggagtttccctgcttttctaagacggaaagaaagagaggattgatttttcagcctccttatatggacagaattggtcaattatttccttgcaacacttacattatattgactgtactcttctttttggaagtgcttcattaagagatctgtcaatctcctcatacacatatattaacatttttagctcttctgagccaaaggctcaaagagctaatgctatggccatttgtgcggtgtgcgttaactttttagaatatgggccataactcaagaaccccttggccaatcagtaccaaatttgtcacagggtatccttggcccaagggctaccatttatactaaaataagggttgggaccctaaaacaaggggagataatcaggaaaacaaaactaaaagtactggttgctaaaaaatcttcttctccagaaccaccaggcagattttcaccaaacttacatacaaggatcaggatatgttgaagattaaaaattgttcaaggcatgaccctggggcaaagggcgtggtctcaaggtcacttcaaagttgacctaaatttacaattaataaaaacgtgtatatttttcttactataaggactagaatcatcaaatcttgtaagttgatgcatcttacgacttcacatcatgttaactcaaaagtaggtcacggtgacctactttttaaattttgcggggatttgttttcaaattgatttgaaggcatattttggacactttaaggcctatgatcatcaaactttgtcagttgatgcatcttgggtccttgaacaatgtcaacttaaaagtaggtcactgtgacctactttttgaactttatgacttatccttttaaaaacattaaatcccaatatttcagatactggaaggtttagaatcatcaaatcttgtactttgatgcatctagggaccttaaaacatatttataacaaagtagatcactgtgacctactttttgaattttgccgacatttgttttcaaattgtttaaaatgcatattttgattaccttcagacctacgatcatcaaatttggtcagtagatgcatcttgggtctttgaaaaatgttaaccaaaatgtaggtcacgatgacctactttcgacattttatggctatatttcagtatcttaggcatttattggcttagaatcatcaaactttgtgagtggatgcatatttagttttcggagagtgatgaccaaaaattaggtcatggtgacctacttttgacattttatggctttatttaagtatctccggtacttattggcttagaatcatcaaactttgtgagttgatgcatatttagttttcggagagtgacgaccaaaaagtaggtcatggtgaccttcttttgacattttgtgactttatttaagtatctccggtacttattggcttagaatcatcaaactttgtgagttgatgcatatttagttttcagagagtgacgaccaaaaagtaggtcatggtgacctacttttgacattttatggctttatttaagtatctgcggtacttattggcttagaatcatcaaactttgtgcgttgatgcatcttgggttttcggagagtgacgaccaaaaagtaggtcatagtgacctacttttgacattttgtggctataattaagtatctctggtacttattgacctaaaatcatcaaactttgtcagatgatgcatcttgggttttcggagaatgtcgaccaaaaagtaggtcacagtgacctacttttgaatatctcaggtacgtattagcttagaatcatcaaactttgtcagtttaggcaccttgggttttcggagaacgtcaaccaaaaagtaggtcactgtgac
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]