LOCUS       XM_062495458            4861 bp    mRNA    linear   VRT 26-JAN-2024
DEFINITION  PREDICTED: Cinclus cinclus NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), transcript variant X3, mRNA.
ACCESSION   XM_062495458
VERSION     XM_062495458.1
DBLINK      BioProject: PRJNA1066473
KEYWORDS    RefSeq.
SOURCE      Cinclus cinclus
  ORGANISM  Cinclus cinclus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Cinclidae; Cinclus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_085051) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_963662255.1-RS_2024_01
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 01/19/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4861
                     /organism="Cinclus cinclus"
                     /mol_type="mRNA"
                     /db_xref="taxon:127875"
                     /chromosome="6"
     gene            1..4861
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon."
                     /db_xref="GeneID:134045630"
     CDS             67..3492
                     /gene="NRDE2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2 isoform X3"
                     /protein_id="XP_062351442.1"
                     /db_xref="GeneID:134045630"
                     /translation="

MALFPAFAGAAQPGEPPAGSSEGSTRDLDWLSNPSFSAEDALLLHQRTTEVANLIPEKSPLIRTSSRSELSEESDTDESLKQTSKKRKKKKHHHSKKTKKKTKGDSSSSESDVDTKHIKDKGSGKSSGKEAAANLGKKASSVTSSRSIWLDDIQAPRADTFRIDKKPDPANWAYKSLYRGDIARYKRKGESCLGIDAKKHCITWDSSASKRKQAQSRPERYFTKNNVKMLSTDGILVCNKNSPSDPAAFIPVSHVETDDSSDTTEVNPLGIYDASTTVWLQGKGCKSADSESVNTQQTIQEPGIKLNSILMTKVEEYNKKVRENPRDINAWMEFISFQDELMRGPGPYASTGEQESRRKSLKLILEKKLAILERAIESNPSNVDLKLARLKLCTEFWEPPALIKEWQKLIFLHPNNPEMWKKYLLFCQSQFTTFSVSKINSLYGKCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWVVKPDDEDDEEIDEDQEIKDKTLPKWHIWLDIEYSREARHWLPWRPDKTKKETEEDCEDPERQVLFDDLGPSLIRLSNPKLQHQLLYSFLQFLGVPCTSKLFPSSLYIAMDENNIFDSVLYDDKPLTSVDFPLSGFSSIGHMDAMSRSRHQIGHYKEGEEFVQNVFHVLSQILTGKEKSNLAICWLQYEISKVIQCLQAKKKKKLKAQGRKSKKLAKNFLKAPDNRNNLSLWKLYAYLEWLLGNTDDSRKVFDTALCTAGTGGLRSAQLCSLSLLYAQLEVEVLESIEGAVMSRAVHILTKLTENGPYVPYSGQVLPVNVLKARKTYEHALQDCLSRTPVSDQDQVNATDQLVNLVGCYALFQYLTVGIDAAVLIYTQASEKLEASGSQNCENTGENSGILNFPTALEAVTVLHTNLLRFHMKISVYPLNPLREALTEALKRYPSNQSLWRSYIHIQRKSHSASKARRFFDSVTRSSNSLEPWLFAIQAEQMRKKLTEKVQRADVGEIHCTIPETGLTNRIVALFEHAVQSENGTHCPLLWRMYLNFMVLYMDAVEYFPDDLQETLDLMTEKELRVRVPMEELDLLLEI"

     polyA_site      4861
                     /gene="NRDE2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ccggcgcgcccggcgccatcttgccgccggcggctcagggtggggggcggtgtcggcggccgagacatggcgctgttcccggccttcgccggggccgcccagcccggggagccccccgccggcagctccgagggctccaccagagatttagactggcttagtaacccaagcttctctgcagaagatgcactattactgcaccagcgcactacagaagttgccaatctcattcctgagaaatcaccattaataaggacttcttcaagatctgagttgtcagaggagagtgatacagatgagagtctgaaacagacaagtaagaaaaggaaaaagaaaaagcatcaccacagtaagaagacaaaaaagaaaaccaaaggagattccagtagcagtgaatcagatgtggacactaagcacatcaaggacaaaggaagtggcaaaagtagtggaaaggaagcagcagcaaatctaggtaagaaagcatccagtgttaccagcagtcgctctatttggcttgatgatatccaggcccccagagcagacaccttccggatagacaagaaaccagaccctgcaaactgggcctacaaatccttgtatcgtggggacattgcaaggtataaaaggaaaggagagtcctgtcttggcatagatgcaaagaagcactgtataacttgggatagttctgcatcaaaaaggaagcaagcacagagtcgacctgagcgctactttacaaagaacaatgtgaagatgctgagcacagatgggattcttgtttgtaataaaaattctccatctgatccagctgcttttataccagtttcccacgtggaaactgatgattcttctgacacaacagaagtaaatccccttgggatttatgatgcatcaaccacagtgtggctacaaggaaaagggtgcaagagtgcagacagtgagtctgtaaatactcagcaaacaattcaagagcctgggataaaactgaactccattttaatgacaaaagtggaagaatataacaagaaagtcagagaaaacccaagagatattaatgcttggatggaatttatttcctttcaggatgagttaatgagaggacctggcccttatgccagtacgggagagcaggaatcaaggagaaaatcactcaagttaatcttggaaaagaaactggccattttagagagggcaattgaaagcaatccaagtaatgttgatctaaaacttgccaggctgaagctttgcacagaattctgggaaccaccagctttgatcaaggaatggcagaagctaatttttttacatcccaataatccagagatgtggaagaaataccttctgttctgtcaaagtcagttcactactttttccgtctcaaagatcaacagtctctatggaaaatgtttgacaacactggcagctgtacaggatggcagcatggtatcccatcctctgctgcctggcacagaagaagctatgctggctatatttattcagcagtgccactttctgagacaggctgggcattctgagaaagcagtgtccttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggagttctttgaacccttttgggatagcggagagccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctgggttgttaagcctgatgatgaggatgatgaagagatagatgaggaccaagaaataaaggataaaactcttcccaagtggcatatttggttggatattgaatattcccgtgaggcaaggcactggttaccttggaggccagacaaaaccaaaaaggaaactgaagaagattgtgaagatccagaaagacaggtgttatttgatgatcttggaccgtctttaatccgtctttctaatccaaagcttcaacatcaactattgtactcttttttgcaattcctgggagttccatgcacaagtaaactctttccttccagtctctatattgccatggatgaaaataacatctttgacagtgtgctttatgatgataaaccactgacttctgttgattttccactttctggattcagcagtattggtcatatggatgcaatgtcacgaagtagacatcagataggccactataaagaaggagaggagttcgtacaaaatgtcttccatgttctgtcccagatacttacaggaaaggaaaaatctaacctggccatttgttggctacagtatgaaatatctaaggtaattcagtgtctccaagcaaaaaagaaaaagaagctaaaagcacaagggaggaagagtaaaaagttggccaagaatttccttaaagcacctgacaaccgaaacaacctttctctctggaaactctatgcctacctagaatggctgcttggtaacacagatgattccagaaaggtgtttgacacagctctttgcacagcagggacaggaggattgaggagtgcccagctctgcagcctcagcctgctttatgctcagctggaagtggaagtgctagaaagtatagaaggagctgttatgtcacgtgctgttcatatattgaccaaattgactgaaaatggaccatatgtgccctatagtggacaagtgttacctgtgaatgtcttgaaggctcgtaaaacatatgagcatgcactgcaagattgtttaagcagaacaccagtttctgatcaggatcaggtcaatgctactgatcagctggttaacctggttggttgttatgcactgttccagtatttgactgttgggattgatgctgcagtattaatatatacacaggcttcagaaaaacttgaagcttctggttcacagaactgtgaaaatactggagagaattctggcattctaaattttcccactgctcttgaagctgtcacagtgctgcatacaaatttactgagattccacatgaaaattagtgtttatcctttgaatccccttcgagaggcactaacggaggctctgaaacggtatcctagcaaccaatctctttggaggtcatacatccacatccaaaggaagtctcacagtgccagcaaagcacgaagattttttgatagtgtcacaaggtcttctaactctttagagccatggctgtttgcaatccaagcagagcagatgagaaaaaaactcacagagaaggtccagagggcagatgttggtgaaatacattgtactattcctgaaactgggttaacaaaccggattgtagcgctatttgaacatgcagttcagagtgaaaatggtacccactgtccactgctatggagaatgtatttgaactttatggtactctatatggatgcagtagagtatttccctgatgatctgcaagagacgctcgatctaatgactgaaaaagaattgagagtgcgggtacctatggaagagctggatctactactagagatttaaaagaagaccatagcagagtggatgaagtacagaagttgcttccaaagctagcagttagatccgtatcttttcatacaggaactctgttgcgacttgggtactatgtacttggtatttttttgttgttaaatgttttgtataaattcctatcaaaatggagttctgctacctgcaagtattctggaatcaaagactgaactttgttcacaataatggatccatttctctgaagtattgctggctcccacagaaggataccatctttaaatagtctcctcttggaagttgccttcatttctgattctattgtttgaaattacattccctagggttcagtagaggttcagtacatgccaactatggcttgatgagcagcacaggaaatgaacatctgccaaatggatgctccactgtcctctagttggcagacttcagtaatttccttcagcgtggtatgcctgtgcatatgtaactgccaagtcaaacagctattacatctgtacattatactgtgagtaaaagctaaatttttgtttgagcaggcacctattttggtatgctttgacagatgaccattttaatataaatatctctgaaaaatatacctgaatatttgacaattaaaagtagttttttatttgatttaatagaactcgagtgtattaaaaatgaaaacatgtccataatgcatctctaaacacctcacttctaaacaaatttttgtaattgattacttgctttgactcaaatccaggcaattcttctaagagaagtagaggttggttctgcatttgattctcatcaagaaggcacagttttctatgattatttttaaagtagcttatattccaagagacttttagcaagctactagagaagtaatatgaaatatggtaacaatatgttacacatttattttgtaaaacagaacatgttgaaacatggaacagattgagacccaaggactcagagactggattttcatctgaaacaagtatacctgtagccacagaatacccaaaactgcttcagacatttttcatgagagagctaattgtcattagcagcactaaagcaattgggatcatccagctggtgagatcctattactcatgaagctatgtctggacaagacgtacaacttctaactcgggcctgccaccataatacaagatggaatacactgcagttcagactgcatttcatttattcctttctaaaattattttaaatattgcaggaagtatgtataattttatattacagcacttctgaagagtcttagaatattgatgaagttagaagtgatgctggtgttgctgtattgattcgtctttgtgaaaaatatagtttatttttcaaatcttta

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