LOCUS       XM_062469617            3866 bp    mRNA    linear   VRT 26-JAN-2024
DEFINITION  PREDICTED: Osmerus eperlanus NRDE-2, necessary for RNA
            interference, domain containing (nrde2), mRNA.
ACCESSION   XM_062469617
VERSION     XM_062469617.1
DBLINK      BioProject: PRJNA1066317
KEYWORDS    RefSeq.
SOURCE      Osmerus eperlanus (European smelt)
  ORGANISM  Osmerus eperlanus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Stomiati; Osmeriformes;
            Osmeridae; Osmerus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_085026) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_963692335.1-RS_2024_01
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 01/19/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3866
                     /organism="Osmerus eperlanus"
                     /mol_type="mRNA"
                     /db_xref="taxon:29151"
                     /chromosome="9"
     gene            1..3866
                     /gene="nrde2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins"
                     /db_xref="GeneID:134026712"
     CDS             65..3670
                     /gene="nrde2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2"
                     /protein_id="XP_062325601.1"
                     /db_xref="GeneID:134026712"
                     /translation="

MALFPAFAGLASTKVDEPHKELEWLTNQSFRSDEALSLHQRAVEKSIQREQPAADTRLLSSEEEEEDRNDVSSKKRKKKEKKKKEKKKHRRKRRPSDSSGSDSDTVYPSDLLKKDAEEPSQQPQVQCQLEGKFAWLDDLQSPPAQLFCLDRKADSANWQYKSLYRGDIARYRRKGQSCLGLDPRRQAISWAESESSNRKRSDKNRKQTERYFCSSARPLLKAPSVPSLPGAPAPGPTLEYIPLPLCPKEGGAGAGSGPVSWVNPLGVYDDSTSLWLQGRGHSEQGQGQEPSRDKDSSAALLAGRVEDFNRRLRETPTDTQLWLQFLHFQDELWDAGGFGGEGGSREAERGGRSVRASVEKKMSIAERALESNPGCVALQLERLRLSRELCEPAALQKEWRKLVFLHPNSAPIWREYLLFTQSHFSTFSVSKVNSAYGKCLSTLAAVQDGSMTSHPALPGTQESMLDIFVQQCHFLRQAGHSEKAACLFQALLDFTFFKPDSVKDLPTRQQVEFFEPFWDSGEARVGERGARGWKAWMLQQERGGWLLPNTDDDDDDDEDPEEELKDRTWPKGRIWLDIETSREANHWLPWRPDKAKGQSVEDCEDPDRQVLFDDIGQSLIRVNSPELKLRLMFHFLQFLGLPTGALDCSSAHTAPWWSSLLEDLSLLGEVPQAQPPLTAYHLPAPLVSPVGHMTTLQGARKWADLGKPGEEFLTNVFQMLLPLFPSKQRAVLYLCWLQYEKLKVLRCVRHGNKRRLRVQGKRSKRVAKCLLKEPENRGWLPLWREYAHLEWLLGNLADARKVFDSALVLGVAGGLADSSLCHLCLLYAQLEVEEAAGQSVAGGGQVGPATGSAAVYVLTKLAEGGSYAAFSGELAPVAVLKARRTYELALHTCLAGLEKQEDPGKELNAQGQKLGGLGQWNQPSLVSGLVGCYALFQYLTVGVEAAQAVYSLARERLGQLHSRPDANSDANLANANTDPSPASVASANRLASECEYLAVQQAALLHYHTSTSVYPLRPLRETLTSALQLHPTSAPLWRLYVQVENRYHSAGRARRFCHGIARGCASVVPRLFAISAEQHRKQLLDSAIRSCSQGEALPTLPENGLSNRIRSLFENALATEQGTHCPLLWRMNMHFLVSDGSVEKGRAVFYKALQDVPWAKGVYMDAVRLFPEHMQEYLDLLTEKELRLRLPMEEMDILLED"

     misc_feature    503..799
                     /gene="nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(503..526,533..538,548..553,557..559,563..607,
                     614..622,626..634,659..667,686..691,695..700,707..724,
                     746..757,773..799)
                     /gene="nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    986..1984
                     /gene="nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:462472"
ORIGIN      

ctccacttgagctgtcaactcatatgacgtcacatccctgcgactgtttacatgcagcggtaacatggcactgtttccagcgtttgcaggattagcgagtacaaaagttgacgaaccacataaagaactggaatggctgaccaaccaaagtttccgctccgacgaggctctttcccttcaccagcgtgcggtagaaaagtctatccagcgcgagcagccagcagcagatacaagactgttgtcaagtgaggaggaggaggaagaccggaatgatgtttcgtccaagaagaggaagaagaaggagaagaagaagaaggagaagaagaagcacaggagaaagaggaggccttcagacagcagcgggtcggattcagacaccgtctatcccagcgaccttctgaaaaaggatgcagaggagcctagtcagcagccccaggtccagtgccagctggaggggaagtttgcgtggctggatgacctccagagtccccctgcccagctcttctgtctggaccgcaaagcagactctgctaactggcagtacaagtctctgtacaggggagacattgccaggtaccggaggaagggccagtcctgtctgggcctggacccacgcaggcaggccatcagctgggccgagtccgaatcctcaaacaggaagcgatctgacaagaacaggaagcagacagagcgctacttctgctcctctgcccgccctctgctgaaagccccttccgttccctccctccccggggcgcctgcacccggccccaccctcgagtacatccccctgcccctctgccccaaggaggggggtgcaggggcgggatctggacccgtgagctgggtcaaccccctaggggtgtacgatgactccacctccctctggctacagggccgtggccacagtgagcaggggcagggccaggagccctccagggacaaggacagcagcgccgccctgctggctgggagggtggaggacttcaacaggaggctgagagagacgcccacagacactcagctctggctgcagttcttgcacttccaggatgaactgtgggatgcgggagggtttgggggggaggggggatcgagggaggcggagcgtggcggacggtcggtgcgagcgtctgtggagaagaagatgagcatcgcggagcgcgcgttggagagtaacccggggtgcgtggccctgcagctggagaggctgcgtctgagccgggagctgtgcgagcctgcagccctgcagaaagagtggaggaagctggtgttcctgcatcccaacagcgcccccatctggagggagtacctgctgttcacgcagagtcacttcagcaccttctccgtgtcaaaggtcaactccgcctacgggaagtgcctgagcacgctcgctgctgtgcaggatggaagtatgacgtcacacccagccctgcccggcacccaggaaagcatgctggacatctttgtgcagcagtgtcacttcctgcgtcaggcgggacactctgagaaggctgcgtgtttgttccaggctctgctagacttcaccttcttcaaaccagacagcgttaaagacctgcccaccagacagcaggtggagtttttcgagcccttctgggacagcggggaggccagggtgggagagaggggcgcccgaggctggaaggcctggatgcttcagcaggagagaggaggctggcttctacctaatacagatgatgatgatgatgatgatgaagatccagaagaggagctgaaggacaggacctggccaaaggggaggatctggttggacattgagacatcccgtgaggccaaccattggctgccctggaggccggacaaagctaagggccaatcggtggaagactgtgaggacccagacagacaggttctgtttgatgacatcggtcagtctctgattcgtgtgaatagtccagagctcaagctacgtctaatgtttcacttcctgcagttcctgggtttgcctacaggggcgctagactgctcctctgcccacaccgccccctggtggagctcactgcttgaggacctgtctctcctgggggaggtgccccaagctcagccgccactcacagcgtaccacctcccagccccattggtcagccccgtgggacacatgaccaccctgcagggtgccaggaagtgggcagatctgggcaagccaggggaggagtttctgaccaacgtgttccagatgcttctgcccctattcccttccaagcagagagcagttctgtatctctgctggctgcagtacgaaaaactcaaggtgctgcgctgcgtgcggcacggcaacaagcgtcgtcttcgcgtccaggggaagaggagcaagcgtgtggccaagtgtctcctcaaggagcctgagaaccgcggctggctgcctctctggcgcgaatacgcacacctggagtggcttctgggtaatctggcagacgcccgcaaggtgtttgactccgccctggtgctgggtgtagccggggggctggctgactcgtccctctgccacctctgtctgctgtacgcccagctagaagtagaggaggcagcaggacagagcgtggccgggggcggccaggttgggccagccacgggctcagctgctgtgtacgttctgaccaaactagctgagggggggagctacgcagccttttctggagagctggctcccgttgcggtgctgaaggctaggaggacctacgaactggccctgcacacctgcctggctggcctggagaagcaggaggaccccgggaaggaactgaacgctcaggggcagaagcttggaggcttggggcagtggaaccagcccagcctggtgtcgggcctggtgggctgctacgccctgttccagtacctgactgtgggggtggaggctgctcaggccgtgtacagcctggccagggaaaggctgggacagctccattccaggcctgacgctaacagcgacgctaacctggctaatgctaacacggatcctagcccagctagcgtagcgagtgctaaccggctagcctcggagtgcgagtacctggctgtccagcaggctgcgctgttgcactatcacaccagcaccagtgtgtacccgctgagacccctcagagagaccctcacctctgccctgcagctccaccccactagcgcccccctgtggaggctctatgtacaggtggaaaaccgttaccacagtgccggcagggcacggaggttctgccacggcattgccaggggctgtgccagtgtggtgcctcggctctttgccatcagcgcggagcagcacaggaagcagcttctggattctgccatcaggtcttgttcccaaggcgaagcactccccaccctgccagagaacggacttagcaaccgtatccgctcgctgtttgagaacgccctagcgaccgagcaggggacccactgtcctctactgtggaggatgaacatgcacttcctggtgtctgatgggagtgtggagaagggcagggctgtcttctacaaggctttacaggatgtcccctgggccaagggagtgtacatggatgcggtgcgtctgttcccagagcacatgcaggagtatctggacctgctgacagagaaggagttgagactgaggctccccatggaggagatggacatcctgctggaggactgacgcttcccatgatgcactgctgctaccatgccaggagatggacatcctgctggaggactgatgcttcccataatgcactgctgctaccatgccaggagaggctggttggatagacatcagatttcattggaaccgatgtgaatttgggaatataaatattttgatggatcccatttgaataattgtttaataaatt

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