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2024-04-29 19:55:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_062033501            6681 bp    mRNA    linear   VRT 02-JAN-2024
DEFINITION  PREDICTED: Entelurus aequoreus zinc finger protein 638-like
            (LOC133639849), transcript variant X2, mRNA.
ACCESSION   XM_062033501
VERSION     XM_062033501.1
DBLINK      BioProject: PRJNA1055515
KEYWORDS    RefSeq.
SOURCE      Entelurus aequoreus (snake pipefish)
  ORGANISM  Entelurus aequoreus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei;
            Syngnathidae; Entelurus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_084752) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_033978785.1-RS_2023_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/22/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6681
                     /organism="Entelurus aequoreus"
                     /mol_type="mRNA"
                     /isolate="RoL-2023_Sb"
                     /db_xref="taxon:161455"
                     /sex="male"
                     /tissue_type="Whole Body minus internal organs"
                     /dev_stage="adult"
                     /country="Sweden"
                     /collection_date="2022-06-15"
                     /linkage_group="LG22"
     gene            1..6681
                     /gene="LOC133639849"
                     /note="zinc finger protein 638-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon."
                     /db_xref="GeneID:133639849"
     CDS             396..6056
                     /gene="LOC133639849"
                     /codon_start=1
                     /product="zinc finger protein 638-like"
                     /protein_id="XP_061889485.1"
                     /db_xref="GeneID:133639849"
                     /translation="
MYHHRSQSQDQQSFPSVSRLGQNQQTHLQHNSPASNMHGFPFPRRTQLPDELESALSIRGARDTDHRLSDHTNQQSQHQGKRQVSIVSQHGGYSSSPIAHSSDNQANQQRADWSSFQPPNKLFASPTSGGSHHSHHPGPHQQSQSNQTGTTIPSWTSGNMSSSQVQRLCRVGAQGQGLYTPENAGSILASFGLSNDDLEVLSHYPDDQLTPDTLPFILRDIQINKSDNQNTVAPNIHDKLLLPTTSSQLKGSSSPEVPSLLTVTKTAGQVIDYGHASRVKDSTTTKTFKREKLSSARKVQMYPSSSSTSTSKVEKVEKRQVRLVHVESSRHGDRDYRRTSSDHHKRSRSRSSDGPPSKSRIADKDYRHNGSKPRFSAEPKNELPSRHSSSSSSGTASQDTSKKLPTSALISDFSGTCPKVFPHSCTLCHIECDHEKDWFDHVNTVNHTAACRDLRNKYPEWKLDRKSPTHSASGLEPPSHKPGWSYSHNDRYHYFAGGGSSQSGLKRPYNDLNKQSDTSLKFSNSKADHGRSHFSANTDKKATRPGNKTTKTAPTKADEHSTKPPPAKKKNTSTSALSDSIEERLVYLTGIPKQTTEQEVTKLVASFGKINNVILIPCFEKESDTLKASVCMEKAADAQALANSANIKIGDQLITASVAKKSEPGQSPVCSNSKPISSLDKVADRKDLTVDANQNILAKKGLVLITGLPGCDCSESDIIELIQPFGHPTDIILASSVRKVLVSLPDVATAQEVVKVHSSTPAKMKDCELKMVNIKQHIGIDTPVALYNLLMESLDPLESSVPVGWNSLLVISNVPNTSTSSSDVKQLVERFGTVVKSLELKNMVICEMTTAPMALSVYKRFQRFPCVIQSNHLLFSRKPDPKASTRTQICSPNLHSPKDILERDDCKSGANNQEAKGNEENYSLKKNKQGPEMLNSPEKVVSEDEEMAKNGSKIVTNTDQVPYSAYEADRLSKTNKVNIPAIQADMKTNKELSVEADMKTNKKMSALETDKEIPTIETYMKTVKEMSIETDMKTDKDISAIKTDTKTEMDTSAIETDMKTDKDMSAIETDMKTDKDMSAIETDTRTDKDMSAIETDTKTEMDTSAIETDMKMDKDMSAIETDTRTDKDMSVIETDTKTDKEMSAIETDTKTDKEMSAIETDTKTDKEMSAIEADTKTDKEMSAIKTDTKTEMDTSAIETDTRTDKDMSAIETDTRTDKDMSAIETDIRMDKDMSTIKTDTKTDKEMSAIEADMKTDNEMSAIETYTKTDKEMSAIKTDTKTDKEMSATETDTKTDKDMSAIKIDLKTDKEMFVIDTHRPTIETDIKTEKKMSDVETDMNTDKKMSDIETDMKTDTEMTVIDTNMSTIETDMKADKTVTTIKTVMQTTINETKLGEEISTDMAIAELTKDAQKAKDTGKRTGGLSNKMAISADGDQTHLESEREKADDETKETRRKRAVDVTNESVKSHIEPALRTQDRVRIEREARREKEAKERERREKERRLWEKERRAKWENEREERIMRHRRERERRDRKRDRDDRSLELRSSYRSETHKTSSFDKPATSRKSDAKPPEMGMDGDFDSFPFNMSEFVTVDEVGDVIDFPNSPPAAAPEDTTKQEQQDSPTCVPQSALEDTPLEITEGMLICQPVKSDDPLTECQHQPIKSDEPITDCQHQFGDSISGCEDPPTFSAETNLSSDVMGMLSCETAAPPTEAQQEISPFDPNLVPACQPEECETDGPTTEMGMTAEIKAAEGKEDKTATLDSSPGKESVTMMLNKEEEKMQKTEDKETSIPSQEPVKHEVSENPTITEKKSDIETPTTTDNALHFDPSNPVGMEFLMPKTGFFCKVCNRFFSGNKDAQITHCKTFKHFENLQKHLERNKKVDATSS"
ORIGIN      
caagaaggagtaggaacactcggcggtgtgattcagtgtacaaaagtgtatttctgtttttcacctcacagtcacgctgtgcatacagagtaatttgcatcttgcgtgccgccttcatttggagtccatttcaacattatctgtgacccaacagcaccagaggagaccctttttgcatttggatcttcagcagatgatactttcaacactttgacaagattgacattggttttaggtatctctctttccttgtggcaaaacagttgaagcaacatgttcagagccacgactggactgctgagttaccctagcacctgatccgcacaaatattctcaatagaaaaagactgtcaaactgcaaaactatcacactacaactggatctgtctgctgctatgtatcaccaccggtctcagtcacaagaccaacagtctttccccagtgtgtcaaggcttggtcagaatcaacaaacacatctacaacataattcacctgcctctaacatgcatggcttcccatttcctcgccgtactcaacttcctgatgagctagagtcagctctgtctattcgaggagccagggatacagaccaccgcctatctgaccacacaaatcagcaaagtcaacatcagggaaaacgccaagtgtctatagtcagtcaacatggaggctacagttcaagcccaatagcacacagctctgataatcaagcgaatcagcaaagggcagactggtcaagctttcagcctccaaataaactgtttgcaagccctacatctggtggaagtcatcactctcatcatccgggccctcaccaacagtctcagagtaaccaaacaggaacaaccattccaagttggacatcaggcaacatgtcctcttctcaagtccagcgactatgtcgtgttggtgcgcaaggccagggtttgtatacacctgaaaatgcaggaagtatcttggcaagctttggactatcaaatgacgaccttgaagtgttgagtcattacccagatgatcagcttaccccagacacattgccgtttatacttcgtgacatacaaatcaacaaatcagacaaccaaaataccgtggcacccaacattcatgacaagctgctccttccaacaacctcttcccagctcaaaggttcatcctcccctgaagtacccagtcttctgactgttacaaaaacagcaggtcaagtcattgactatggtcatgccagccgagtaaaggacagtactactacaaagacttttaaaagagagaaactttcaagcgcaagaaaagttcagatgtacccatcatcatcctctacatccacttcaaaagtagaaaaggttgaaaaacgccaggtacgtttggtacacgtggaatcgagcaggcatggagaccgggactaccgtaggacaagtagcgaccatcacaagaggagtcggtcacgcagtagtgatggtccaccatctaaatctcgtattgcagacaaagactacaggcacaatggatcaaagccaaggttctcagctgaaccgaagaacgagctgccctcaaggcactctagttcctcttcatctggcacagcttcacaggataccagcaagaagttgcctacttctgccttgataagtgatttctctggcacgtgtccgaaagtgtttcctcattcctgcaccctgtgccacattgagtgtgatcatgaaaaggactggtttgaccacgttaatactgttaaccacacagccgcctgcagggacctgcgcaacaagtatcctgaatggaaactagatcggaaaagccctacccacagcgcgagcggattggagcctccttcccacaaacctggctggtcttattctcataacgaccgttaccattactttgcaggaggtggatcaagtcaaagtggtttgaagcgcccttacaatgatctaaacaaacaatctgacaccagcttgaagttttctaactccaaggctgatcatggacgatctcacttctccgctaatacagacaagaaggcaacaaggcctggaaacaaaaccactaaaactgcacctaccaaggctgatgagcattccactaagcctccaccagccaaaaagaaaaacacatcgacttcagcattatcagactccatagaagaacgcctcgtttacctgactgggattccaaagcaaaccacagagcaggaagttactaaattagtggcgtcctttggcaagatcaacaatgtgattctcatcccatgctttgaaaaagaaagtgataccttgaaggcatcggtgtgcatggaaaaagctgcagatgctcaggctttggcaaactctgcaaacatcaaaattggagatcagctaatcactgcttcagtggccaagaaatcagaaccaggccagtctcctgtctgctccaacagcaaacctatttcaagtttggacaaagttgcggatagaaaagacttaacggttgatgctaaccagaacattttggcaaagaagggcttagtgcttatcacaggacttcctggttgtgactgctcagaaagtgacatcatcgagctcattcagccattcggacatccaactgacattatcttggcatcgtcagtcagaaaggttctcgtgtctctgccagatgtggcaactgctcaagaggtggtgaaagttcactcttcaactcctgcaaaaatgaaggattgtgaactcaagatggtgaatatcaagcagcatattggcatcgacacaccggtggctctctacaatctactgatggagtcactggacccattggagagttcagttccagttggctggaacagtctcttggtgatcagtaatgttcctaacacatcgacaagctcctcagatgtaaagcaactggttgagcgttttggcacagttgtcaaaagtctggaactcaagaatatggttatttgcgaaatgacaactgcacctatggcgttgtctgtctacaaacgtttccagagattcccatgcgttatccagagcaaccatctgttattttcgcgcaagccggaccccaaagctagcacacggactcaaatctgttctccaaacctgcattcacctaaggatattcttgaacgtgatgactgcaaatcaggtgcaaacaaccaagaggcaaaaggaaatgaagaaaactattctctgaaaaagaataaacaagggccagagatgttaaacagccctgagaaggtggtcagtgaagatgaagagatggcaaagaatggaagcaaaattgtcacaaatacagaccaagtgccttattctgcatatgaggcagacagactgtcaaagaccaacaaggtaaacataccagctattcaagcagacatgaagaccaacaaggaattgtcagttgaagcagacatgaagacgaacaagaaaatgtcagctcttgaaacagacaaggagatccccactattgaaacatacatgaagaccgtcaaggagatgtctattgaaacagacatgaagacggacaaggacatatccgctattaaaacagacacaaagacggaaatggacacgtccgctattgaaacagacatgaagacggacaaggacatgtccgctattgaaacagacatgaagacggacaaggacatgtccgctattgaaacagacacgaggacggacaaggacatgtccgctattgaaacagacacaaagacggaaatggacacgtccgctattgaaacagacatgaagatggacaaggacatgtccgctattgaaacagacacgaggacggacaaggacatgtccgttattgaaacagacacgaagacagacaaggagatgtccgctattgaaacagacacgaagacagacaaggagatgtccgctattgaaacagacacgaagacagacaaggagatgtccgctattgaagcagacacgaagacagacaaggagatgtccgctattaaaacagacacaaagacggaaatggacacgtccgctattgaaacagacacaaggacggacaaggacatgtccgctattgaaacagacacgaggacggacaaggacatgtccgctattgaaacagacataaggatggacaaagacatgtccactattaaaacagacacaaagacagacaaggagatgtccgctattgaagcagacatgaagacagacaatgagatgtccgctattgaaacatacacgaagacagacaaggagatgtccgctattaaaacagacacaaagacagacaaggagatgtccgctactgaaacagacacgaagaccgacaaagatatgtctgctatcaaaatagacttgaagacggacaaggaaatgttcgttattgatacacacaggcccactattgaaacagacataaagactgagaagaagatgtctgatgttgaaacagacatgaacactgacaagaagatgtctgatattgaaacagacatgaagacagacacggagatgaccgttattgatactaatatgtccactattgaaaccgacatgaaggcggacaaaacggtgacaactattaaaacggtcatgcagacaaccataaatgaaactaagctcggagaagagatatctacagatatggccatagcagagttaaccaaggatgctcaaaaggcgaaagacaccggaaaaagaactggcggcctttcaaataaaatggcaatttctgcagatggagatcagacacatctggagtccgagagggaaaaggcggatgatgaaacaaaagagacgaggagaaaaagagcagttgatgtaacaaacgagtcagtaaagagccacatagagccggctttaaggacacaagacagggtgagaattgaaagagaggccagaagggagaaggaagcaaaagagagagagagacgagagaaggagaggagactctgggagaaggagcgcagggccaaatgggagaacgagcgggaggaaagaattatgagacataggcgtgaaagagaaaggagggatagaaagagggatcgtgatgataggtccttagaacttagatcatcttacaggtcggagacacataagacctcctccttcgataagccggcaacttcaagaaaatcagatgctaagccacctgaaatgggtatggatggggattttgattcctttccatttaacatgagtgaatttgtgaccgtggatgaagtaggggatgtgattgacttccccaactctcctcctgctgctgctccagaggatacgacaaaacaagagcaacaggattccccgacatgtgtcccacagagcgctcttgaggacacacctttggaaatcacagagggaatgttaatatgtcagcctgtgaagtctgatgaccccttaacggagtgtcaacatcagcccattaagtccgatgagcccataactgattgtcagcatcagtttggtgattccatatcaggatgtgaagatccgcctacattctcagctgagaccaatttatcatcggatgtgatgggcatgctgagctgcgaaactgcagccccacccacagaagctcaacaagaaatctctccctttgacccaaaccttgtgccagcttgtcaaccagaagagtgtgagacagatggtcccactacagagatgggtatgactgcagaaattaaagctgcagaaggaaaggaagataaaacggcaaccctggatagcagccctggaaaggagagtgtgaccatgatgttgaataaagaagaggaaaagatgcaaaaaacagaggacaaagagacaagcattccatctcaggagccagtaaagcatgaggtgtctgagaacccaacaatcacagaaaagaagagtgatatagaaacgccaacaactacagacaacgctctccattttgaccccagcaacccagttggtatggaattcttgatgccaaaaaccggcttcttctgtaaggtgtgtaaccgtttcttcagcggaaacaaggacgctcaaatcactcactgcaaaaccttcaagcattttgagaacctgcagaaacacttggagaggaacaaaaaggtggatgcaacgtccagctgattttgttaacagcttttgagcgaataacgacattcatcttgttttatttcttgttgcacctgtgaaacgatgacctacaaatgttttatcttcagtccactgcgacagtaagtcatcaatcatttgtattcttcagactttctgatcaagatccaggttcaatttctttaaacgactgcagtaactgaactaaaaaaatcaatacatgatctttaggcacactatatgatttcaaaacagtaaccctaaagatactcattatttatgtggtcttcttcacgtggttgtgagagagaatagattggctgatgaaagatgtttcagatatttgaacatatttgatgtaactgacatcaaataccattaatcagtgcatgtctcatagatttcttcatagatgttttagcgtagttagtctagtcagttattgttctgatcctgtttaaacacttggacatttttcatgtaatattcaatggaaaatgggccaattctgatttacaaacatgactgcaaataatttttctgatttagttttttgtttttcttttactttttcagcttcttgattagttgaccttgtactttgcattaaagagcttgcttggtatgacactttgattag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]