LOCUS       XM_061880847            6686 bp    mRNA    linear   VRT 26-DEC-2023
DEFINITION  PREDICTED: Nerophis ophidion zinc finger protein 638-like
            (LOC133538927), transcript variant X2, mRNA.
ACCESSION   XM_061880847
VERSION     XM_061880847.1
DBLINK      BioProject: PRJNA1054578
KEYWORDS    RefSeq.
SOURCE      Nerophis ophidion (straightnose pipefish)
  ORGANISM  Nerophis ophidion
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei;
            Syngnathidae; Nerophis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_084630) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_033978795.1-RS_2023_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/20/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6686
                     /organism="Nerophis ophidion"
                     /mol_type="mRNA"
                     /isolate="RoL-2023_Sa"
                     /db_xref="taxon:159077"
                     /sex="male"
                     /tissue_type="Whole Body minus internal organs"
                     /dev_stage="adult"
                     /geo_loc_name="Sweden"
                     /collection_date="2022-06-15"
                     /linkage_group="LG20"
     gene            1..6686
                     /gene="LOC133538927"
                     /note="zinc finger protein 638-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon."
                     /db_xref="GeneID:133538927"
     CDS             363..5936
                     /gene="LOC133538927"
                     /codon_start=1
                     /product="zinc finger protein 638-like isoform X1"
                     /protein_id="XP_061736831.1"
                     /db_xref="GeneID:133538927"
                     /translation="

MYHNRSQSQDQQSFPSASRLGQNQQTHLQHNSPASNMHGFPFPRRTQLPDELESALAIRGARDTDHRLSDHTNQQSQHQGKRQVSIVSQHGGYSSSPIALSSDNQANQQRADWSSFQPPNKLFASPTSGGSHHSHHQGPHQQSQTNQTGTTNPGWTSGNMSSSQVQRLCRVGAQGQGLYTPENAGSILASFGLSNEDLEVLSHYPDDQLTPDTLPFILRDIQINKSDNQKTVAPNIHDKLLLPTTSSQLKVSNSPEVPSLLTVTKTAGQVIDYGHASRTKDSTTTKTFKREKFSSERKIEMYPSSSSASTSKVEKAEKRQVRLVHVESSRHGDRDYRRTSSDHHKRSRSRSSDGPPYKSRISDKDYRQNGSKPRFSTEPKKELPSRHSSSSSSGTASQDTSKKLPTSAMISDFSATCPKVFPHSCTLCHTECDHEKDWFDHVNTVNHTAACRDLRNKYPEWKPDRKSPAQSTSGLEPPSHKPDSSYSHYDRYHYFAGGESRQSGLKRPYNDLNKQSDTSLKSSNSKADHGRSHFSASTDKKATRPGNKTTKTAHTKADEHSTKPSPAKKKNTSTSALSDSIAERLVYLTGIPKQTTEQEVTKLVASYGKINNVILIPCFEKESDTLKASVCMENAADAQALADSANIKIGDQLITASVAKKSDPCQSTVCSNSKPISSLDEVADKKDLTGDANQNILGKKGLVLITGLPECDCSESDIIELIQPFGHPTNIILASSVRKVLVSLPDVATAQEVVKVHSSTPAKMKDCELKMVTIEQHVGIDTPVALYNLLMQSLDPLESSVPIDWNSLLVISNVPNTSTSSSDVKQLVQRFGTVVKSLELKNMVICEMTTAPMALSVYKRFQRFPCVIQSNPLLFSRKPDPKASTRTQICSPNLHSLKDILERDDCKSGANNPEAKGNEENYSLKNTKQGPEMLNSPEEVVSEDEEMAKNGSKIVKNTDQVPYSANEADRLSKTNIPAIQAHMKTNKELSSEADMKKNKTMSAIETDMKTDKEIPTIETYMKTVNKMSIETDMKTDKDVSAIKTDTKTDKDMSAIETDIRMDKDMSAIKTDTKPNKEMCAIETDTKTDKDMSAIETDTKPNKEMCAIEADMKTDKEMSAIETDTKTDKEMSAIKTDTKTEMDTSAIETDTRTDKDMSAIETDIRTDKDMSAIETDKRMAKDMSAFKTDMKTDKEMSAIEADMKTDKEMSTIETDTNTDKDIKIDLNTDREMFVIDTHMPTIETDMKTDKKMSDIETDMKTDKKMSDIETDMKTDKEMTVIDTTMSTIETDMKTDKTVTTIKTVMQTTINETNLGEETPTDMAISEFTKDTQKARETGKRTGGLSDKMTISADGDQTHLESKRETANEETKETRRKRAVDETNESVKSHIEPAFKTQDRVRIEREARREKEARERERREKERRLWEKERRARWENEREERIMRQRRERERRDRKRDRDDRSSALRSSYRLETYKTSSFDETATSRKSDAEPPEMGMDGDFDSFPLNMSEFVTVDEVGDVFDFPNSPAAAAPEDTTKQEQQDSPTCVPQSAREDTTLEITEGMLIYQPVKSDDSLTECQHQPIKSDEPITDCQHQFGDSISGCEAPPTFSAETNLSSDVMDMLSCETAASPAEGQQEISPFDPNLVPSCQPEECQTDGPTTEMGMTAEGKEDKTATLDSSPGKECVTLMLNKEEEKMQKTEDKETSIPSQEPDGPTTEMGMTAEGKEDKTATLDSSPGKECVTLMLNKEEEKMQKTEDKETSIPSQEPGKHEVSENPTITEKKSDIETPTTTDNALHFDPSNPVGMEFLMPKTGFFCKVCNRFFSGNKDAQIAHCKTFKHFENLQKHLERKKTVDATSS"

     misc_feature    2112..2345
                     /gene="LOC133538927"
                     /note="RNA recognition motif (RRM) superfamily; Region:
                     RRM_SF; cl17169"
                     /db_xref="CDD:473069"
     misc_feature    2475..2660
                     /gene="LOC133538927"
                     /note="RNA recognition motif (RRM) superfamily; Region:
                     RRM_SF; cl17169"
                     /db_xref="CDD:473069"
     misc_feature    3309..>3941
                     /gene="LOC133538927"
                     /note="RNA polymerase sigma factor; Provisional; Region:
                     PRK05901"
                     /db_xref="CDD:235640"
     misc_feature    5790..5897
                     /gene="LOC133538927"
                     /note="U1-like zinc finger; Region: ZnF_U1; smart00451"
                     /db_xref="CDD:197732"
     polyA_site      6686
                     /gene="LOC133538927"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

atcttgaactccagtccagaaggtggtggtaatgcgctcgccaacgactattaaacacgaagaagaaaaagccaagaagaagtaggaacactcggctgtgtgactcagtgtacaaaagcaccagaggagactctcccgttttgcatttggatcttcagcagatgatactttcaacactttgacaagattgaaatttgttttaagtatctctctttccttgtggcaaaaaaagtggaagcaacatgatcagagccacgactggactgctgagttatccgagcacctgatccgcacaaatattctccatagaaaaagactctcaaactgcaaaactatcactacaactgcatctgtctgctgctatgtatcacaaccggtctcagtcacaagaccaacagtctttccccagtgcgtcaaggcttggtcagaatcaacaaacacatctacaacataattcccctgcctctaacatgcatggcttcccatttcctcgccgtactcaacttcctgatgagctagagtcagctctggctattcgaggagccagggatacagaccaccgcctatctgaccacacaaatcagcaaagtcaacatcagggaaaacgccaagtgtctatagtcagtcaacatggaggctacagttcaagcccaatagcactcagctctgataatcaagcaaatcagcaaagggcagactggtcaagctttcagcctccaaataaactgtttgcaagccctacatctggtggaagtcatcactctcatcatcagggccctcaccaacagtctcagactaaccaaacaggaacaaccaatccaggttggacatcaggcaacatgtcctcttctcaagtccagcgactatgtcgtgttggtgcgcaaggccagggtttgtatacacctgaaaatgcaggaagtatcttggcaagctttggactatcaaatgaggaccttgaagtgttgagtcattacccagatgatcagcttaccccagatacattgccgtttatacttcgtgacatacaaatcaacaaatcggacaaccaaaaaaccgtggcacccaacattcatgacaagctgctccttccaacaacctcttcccagctgaaagtttcaaactcccctgaagtacccagtcttctgaccgttacaaaaacagcaggtcaagtcattgactatggtcatgccagccgaacaaaagacagtactactacaaagacttttaaaagagagaaattttcaagtgaaagaaaaattgagatgtacccatcatcctcctctgcatccacttcaaaagtagaaaaggctgaaaaacggcaggtacgtttggtacacgtggaatcgagcaggcatggagaccgggactaccgtaggacaagcagcgaccatcacaagaggagtcggtcacgcagtagtgatggtccaccatataaatctcgtatttcagacaaagactacaggcaaaatggatcaaagccaaggttctcaaccgaaccgaagaaagagctgccctcaaggcactctagttcctcttcatctggcacagcttcacaggataccagcaagaagttgcctacttctgccatgataagtgatttctctgccacgtgtcctaaagtgtttcctcattcctgcaccctgtgccacactgagtgtgatcatgaaaaggactggtttgaccacgttaatactgttaaccacacagccgcctgcagggacctgcgcaacaagtatcctgaatggaagccagatcggaaaagccctgcccaaagcacgagcggattggagcctccttcccacaaacctgactcgtcttattctcattatgaccgttaccattactttgcaggaggtgaatcacgtcaaagtggtttaaagcgcccttacaatgatctaaacaaacaatctgacaccagcttaaagtcttctaactccaaggctgatcatggacgatctcacttctccgctagtacagacaagaaggcaacaaggcctggaaacaaaaccactaaaactgcacataccaaggctgatgagcattccaccaagccttcaccagccaaaaagaaaaacacatcgacttcagcattatcggactctatagcagaacgccttgtttacctgactgggattccaaagcaaaccacagagcaggaagttactaaattagtggcgtcctatggcaagatcaacaatgtgattctcatcccatgttttgaaaaagaaagtgataccctgaaggcatcagtgtgcatggagaatgctgcagatgctcaggctttggcagactctgcaaacatcaaaattggagatcagcttatcactgcttcagtggcgaagaaatcagacccatgccagtctactgtctgctccaacagcaaacctatttcaagtttggacgaagttgcagataaaaaagacttaacgggtgatgctaaccagaacattttgggaaagaagggcttagtgcttatcacaggacttcctgaatgtgactgctcagaaagtgacatcatcgagctcattcagccattcggacatccaaccaacattatcttggcatcgtcagtcagaaaggttctcgtgtctttgccagatgtggcaactgctcaagaggtggtgaaagttcactcttcaactcctgcaaaaatgaaagattgtgaactcaagatggtgactatcgagcagcatgttggcatcgacacaccggtggctctctacaatctactgatgcagtcactggacccattggagagttcagttcccattgactggaacagtctcttagtgatcagtaatgttcctaacacatcgacaagctcctcagatgtaaagcaactggttcagcgttttggcacagttgtcaaaagtctggaactcaagaatatggttatttgcgaaatgactactgcacctatggcgttgtctgtctacaaacgtttccagagattcccatgcgttatccagagcaaccctctgttattttcgcgcaagccggaccccaaagctagcacgcggactcaaatctgttctccaaacctgcattcacttaaggatattctagaacgtgatgactgcaaatcaggtgcaaataacccagaggcaaaaggaaatgaagaaaattattctctgaaaaacaccaaacaagggccagagatgttaaacagccctgaggaggtggtcagtgaagatgaagagatggcaaagaatggaagcaaaattgtcaaaaatacagaccaagtgccttattctgcaaatgaggcagaccgactgtcaaagaccaacataccagctattcaagcacacatgaagaccaacaaggaattgtcaagtgaagcagacatgaagaagaacaagacaatgtcagctattgaaacagacatgaagacagacaaggagatccccactattgaaacatacatgaagaccgtcaacaagatgtctattgaaacagacatgaagacggacaaggacgtatccgctattaaaacagacacgaagacggacaaggacatgtccgctattgaaacagacataaggatggacaaagacatgtccgctattaaaacagacacaaagccaaacaaggagatgtgcgctattgaaacagacacgaagacggacaaggacatgtccgctattgaaacagacacaaagccaaacaaggagatgtgcgctattgaagcagacatgaagacagacaaggagatgtccgctattgaaaccgatacgaagacagacaaggagatgtctgctattaaaacagacacaaagacggaaatggacacgtccgctattgaaacagacacaaggacggacaaggacatgtccgctattgaaacagacataaggacggacaaggacatgtccgctattgaaacagacaaaaggatggccaaagacatgtcggcttttaaaacagacatgaagacagacaaggagatgtccgctattgaagcagacatgaagacagacaaggagatgtccactattgaaacagacacaaacactgacaaagatatcaaaatagacttgaacacggacagggaaatgttcgttattgatacacacatgcccactattgaaacagacatgaagactgacaagaagatgtctgatattgaaacagacatgaagactgacaaaaagatgtctgatattgaaacagacatgaagactgacaaggagatgaccgttattgatactactatgtccacaattgaaaccgacatgaagacggacaaaacggtgacaactattaaaacggtcatgcagacaacgataaatgaaactaacctgggagaagagacacctacagatatggccatatcagagtttaccaaggatactcaaaaggcgagagaaactggaaaaagaactggcggcctttcagataaaatgacaatttctgcagatggagatcagacacatctggagtccaagagggaaacggcaaatgaagaaacaaaagagacgaggagaaaaagagcagttgatgaaacaaacgagtcagtaaagagccacatagaaccggctttcaagacacaagacagggtgagaattgaaagagaggccagaagggagaaggaagcaagagagagagaaagacgagaaaaggagaggagactctgggagaaggagcgcagggccagatgggaaaacgagcgggaggaaagaattatgagacagaggcgggaaagagaaaggagggatagaaagcgggatcgtgatgataggtcctcagctcttagatcatcctacaggttggagacatataagacttcttccttcgatgagacggcaacttcaaggaaatcagatgctgagccacctgaaatgggtatggatggggattttgattcctttccattgaacatgagtgaatttgtgaccgtggatgaagtaggggatgtgtttgacttccccaactctcctgctgctgctgctccagaggacacgacaaaacaagagcaacaggattccccgacatgtgtcccacagagtgctcgtgaggacacaactttggaaatcacagaaggaatgttaatatatcagcctgtgaagtctgatgactccttaacggagtgtcaacatcagcccattaagtccgatgagcccataactgattgtcagcatcagtttggtgattccatatcaggatgtgaagctccccctacattctcagctgagaccaatttatcatcggatgtgatggatatgctgagctgcgaaactgcagcctcacccgcagaaggtcaacaagaaatctctccgtttgacccaaaccttgtgccaagttgtcaaccagaagagtgtcagacagatggtcccactaccgagatgggaatgactgcagaaggaaaggaagataaaacggcaaccctggatagcagccctggaaaggagtgtgtgaccctgatgttgaataaagaagaggaaaagatgcaaaaaacagaggacaaagagacaagcattccatctcaggagccagatggtcccactacagagatgggaatgactgcagaaggaaaggaagataaaacggcaaccctggatagcagcccaggaaaggagtgtgtgaccctgatgttgaataaagaagaggaaaagatgcaaaaaacagaggacaaagagacaagcattccatctcaggagccaggaaagcatgaggtgtctgagaacccaacaatcacagaaaagaagagtgatatagaaacgccaacaactacagacaacgctctccattttgaccccagcaacccagttggtatggaattcttgatgccaaaaacaggcttcttctgtaaggtgtgtaaccgtttcttcagcggaaacaaggacgctcaaatcgctcactgcaaaaccttcaagcattttgagaacctgcagaaacacttggagaggaagaaaacggtggatgcaacatccagctgattttgttaaccgcttttgagcgaataacgacattcatcttgttttatttcttgttgcaaatgtgaaacgatgacccacaaatgttttatctttcatattcttcagactttctgatcaagttccaggttcaattcctttaaacgactgcagtaactgaactaagaaattaaaaaaatgatctttaggcacactatatgatttcaaaacagtaaccctaaagatactcattatttatgtggtcgtcttcacgtgtttacgtggttgtcagagagaatagattggctgatgtaagatgtttcaaatatttgaacatatttgatgtaacaaacgtcaaataccattaatcagtgcatgtttaatagatttcttcatagacgttacagcttaaattggctgatgaaagatgtttcagatattttaacatatttgatgtaacaaacgtcaaatacctttaatcagtgcatgtctaacagatttcttcatagacgtttcagcttagttagtctagtcagttattgtcctgatcctgtttaaacacacttggacatttttcatgtaatactcaatagaaaataggccaattctgcttacttggacatttttcatgtaatactcaatagaaaatgggccaattctgctttacaataatggctgcgaataatttctctgattttgtttttcttttagctttttcaacttcttcattagttgaccttgtactttgcaataaagaacttgcttggtatgaca

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