LOCUS       XM_061429694            4074 bp    mRNA    linear   MAM 13-DEC-2023
DEFINITION  PREDICTED: Bos javanicus NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), transcript variant X3, mRNA.
ACCESSION   XM_061429694
VERSION     XM_061429694.1
DBLINK      BioProject: PRJNA1049397
KEYWORDS    RefSeq.
SOURCE      Bos javanicus (banteng)
  ORGANISM  Bos javanicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Bovinae; Bos.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_083877) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_032452875.1-RS_2023_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4074
                     /organism="Bos javanicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9906"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="whole blood"
                     /dev_stage="adult bull"
                     /geo_loc_name="USA: Glen Rose, Texas"
                     /collection_date="2020-06-27"
                     /breed="banteng"
     gene            1..4074
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon."
                     /db_xref="GeneID:133255095"
     CDS             1077..3854
                     /gene="NRDE2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2 isoform X3"
                     /protein_id="XP_061285678.1"
                     /db_xref="GeneID:133255095"
                     /translation="

MNVDGLAVSSQPEALALEPLSFIPVKGVDDAAPPATSWLNPLGIYDQATTQWLQGQGPSEQESRPPDSQPDRESALLKARVEEFNRKVRESPRDTELWMAFVAFQDELMRSPGLYAVEEGEPETRKRSLRLVLEKKLAILERAIESNPSSVDLKLAKLKLCAEFWEPATLLKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSVSKIQSLYGKCLSTLSAVRDGSIVSHPELPGTEEAMFALFLQQCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKGLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQEWGGWVAVGADDDDEEPEEEDQEIRDKALPRWQIWLAAERSRDHRHWRPWRPDKARKQTEEDCEDPERQVLFDDLGQSLIRLSSPDLQFQMMAAFLQFLGVPSGFSPPTPCLYLAMDENSIFDSELYDEKPLTFLDLSCSGVSCVGRMEPLGGRRWPRGPSREGEEFIRNVFHLALPLFAGRERSQLCVSWLRYEITKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPDNRNSFCLWQQYAHLEWLLGNTEDARKVFEAALGTAGSRGLEDPELCELGLLYAALETELSPPVGGAAPARAVHVLSGLAERRPYGPCTGQVSAVHVLKARRAYEHALQDWLVERRGPDPGPPDRFSHLVSLAKCFMLFQYLTVGVDAAGRVYEQVFAGLRGSVSMEAAGLEGALEAVTLMHTSLLRFHGRVAVHPLAPLREALSEALRLYPGNQLLWRAYVQIQSKSHSASRTRRFFHAITRSAKLLEPWLFAIEAERMRKRLVDAVQRVDGREVHATLPETGLTHRIRALFESAVRSDHGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKALYMDAIEYFPDEMQEVVDLMTEKELRVRLPLEELELLLED"

     misc_feature    1323..2321
                     /gene="NRDE2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:462472"
ORIGIN      

cccttctccagcgtttgctgtttcgagtacgcttgtaacaagcttgcgagaacgcttgtgcacagccctttgtgtagggttgcggtttcccttttcttgggtaaatccctgggaatagaattgctgggccacggggcgaggtctgcgtttgggtttcgtttgtttttaaactgccaggcccgttccccccagcggcccgtgagccccggctcccctccaggtcgctggccgcggctcggtgtcgcccggcctttccctcatcctggctgtcctggtgggtctgcgctcggggcaccgtgcttctcgcgggcctttcgttggtgactcacgacgctgaccacttcttcatgtgtttaccggccgcgcgtgtcttttgtgccgtttctgctcacatcttttgctgatgtttgaattgggttgtttgtgtagcacacacacggaaagggcacagttttcctcagctttcctacagatactcagcagtcatgtgtctgtagctccggggacgcctacacgacccataaaagcattttagagcccagcctcttttcctgtagggtagaaaatagccaaatgtaattttatttgacacactttgtctcgggattaaaaaaagaaccttagacctctctattattttctgaagtagacagcacggaggaaaagggactggtgtaggagtcggagggcctggtgtcacctgaggcctcagcgtccttatttaagaacaccgtcgagggggaggcgatggtttccccttgcctgtcacatgcggtgcggcctgaggtggcgtgatgacggtgctgtgcagagcttaggggcgggtaggtactaaggtctggaagacaggcgtgatctgaaattcgtgagacgcagatgaaacagcaggatagaggaaaagtcctcgtacttctctgagtagaaacagtttggagggaagatacaagaggaaaggagactcctgcctcggcctcaacccgaagaagcaatgtatatcttgggaggggacttccacagaaaagaagcgttcccacaagcacatcgagcgctactttacgaagaagagcgtggggttgatgaacgtggacggccttgctgtcagcagtcagcctgaagctctggcgttggagccgctctcctttatcccggtgaagggcgtggatgacgcggctccccctgctaccagctggctgaaccctctggggatttacgatcaagccactacgcagtggttacagggacagggtccttcagagcaggagtccaggccaccagactcacagcccgacagagagagcgcgctcctcaaggccagggtggaggagtttaacaggaaggtccgcgagagccctcgggacacggagctgtggatggccttcgttgctttccaggacgagctcatgagaagtccgggcctctatgccgtggaggaaggagagccggagacgcggaagcggtccctccggctggtcctggagaagaagctggccatcctggagcgggccatcgagagcaacccgagcagtgtggacctgaagctcgccaagctgaagctctgcgccgagttctgggagcccgccactctgctcaaagagtggcagaaactgatcttcttacatcccaacaacacagccctctggcagaaatacctgttgttctgccagagccagttcagcaccttctccgtatcaaaaattcagagtctgtacgggaagtgcttgagcaccctgtccgccgtgagggacggcagcatcgtctcccaccccgagctgcccggcaccgaggaggccatgtttgccctcttcctccagcagtgccacttcctgcggcaggctggccactccgagaaggccgtgtctctgttccaggccatggtcgacttcacgttcttcaagccggacagcgtgaagggcctgcccaccaaaggccaggtggagttctttgagcccttctgggacagcggcgagccccgggccggggagaagggcgcccgaggctggcgagcctggatgcaccagcaggagtggggcggctgggtggccgtcggcgcagatgacgacgacgaggagccggaggaggaagaccaggagattagagacaaggctctgccccggtggcagatctggctggctgccgagcggtcccgagaccacaggcactggaggccgtggcgcccggacaaggccaggaagcagacggaggaagactgcgaggaccccgagagacaggtgttgtttgacgatctcgggcagtctctgatccgactgtccagcccggatctccagtttcagatgatggcggccttcctgcagttcctgggggtgccttccggcttcagcccccccaccccctgcctctatctggccatggatgagaacagcatcttcgacagcgaactttatgatgaaaagcctttgactttcctcgacctctcctgctccggcgtcagctgtgtgggccgcatggagcctctgggtggccggcgctggccccggggtcccagtcgagagggcgaggagtttatccgcaatgtcttccacctggcactgcctctgtttgcaggcagggagcggtctcagctctgcgtctcctggctacggtacgagatcaccaaggtcatttggtgtctgcacactaaaaacaagaagagattaaagtcacaaggaaagaactgcaaaaaactagccaagaatctcctcaaggagccggacaaccgcaacagcttttgcctctggcagcagtatgcgcatctggagtggttgctgggcaacacagaggatgcccggaaggtcttcgaggcggccctgggcactgccgggagccggggcctggaggacccggagctctgtgagctcggcctgctctacgccgcgctggagacggagctgtcgccgcccgtgggcggggccgccccggcccgcgccgtgcacgtgctgagcgggctggcggagcgccggccctacgggccgtgcacgggacaggtgtcggccgtgcacgttttgaaggctcggagggcgtacgaacacgcgctgcaggactggctggtggagcgccgcggccccgacccaggcccccccgaccgcttcagccacctggtcagcctggcgaagtgcttcatgctcttccagtacctgaccgtgggggtcgacgccgctgggcgcgtctacgagcaggtgtttgcggggctcaggggctctgtctccatggaggctgccggcctggagggcgccctggaggccgtcaccctgatgcacaccagcctgctcaggttccacggcagggttgccgtgcacccgctggctcccctgcgagaggcgctctcagaggctttacggttgtacccgggcaaccagcttctctggagggcgtacgtgcagattcagagcaagtcgcacagcgccagcaggaccagaagattcttccacgccatcaccaggtccgccaaactcctggagccctggctgtttgcgatcgaagcggagaggatgcggaagaggctggtggatgccgtgcagagggtggacggtagagaggtccatgccacccttcccgagaccggcctgacgcaccggatcagagccctgtttgagagcgccgtgcggagcgaccacggcagccagtgccccctgctgtggaggatgtacctgaacttcctggtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcactgcagaattgtccttgggcaaaggcgctgtacatggacgccatcgagtacttccccgacgagatgcaggaggtcgtggacctgatgacggagaaggagctgcgggtgcgcctgccgctcgaggagctggagctgctgctggaggactagacgctgggggccgggcccagccccggaacacgggcacgtgcgtgcccagacctgtgccctgaagggtcctccctgacgcgcgtgtctaggctgtcagtctcaccttctgcagtttctgcacatgcgaatgacacaaagctgacgttctgcacacgatacatgtgaatgtgtgtaagcgtgcacagacaaggatcacgccaaagctgtcacggctcgtgtg

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