2024-09-08 11:30:16, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_061429694 4074 bp mRNA linear MAM 13-DEC-2023 DEFINITION PREDICTED: Bos javanicus NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X3, mRNA. ACCESSION XM_061429694 VERSION XM_061429694.1 DBLINK BioProject: PRJNA1049397 KEYWORDS RefSeq. SOURCE Bos javanicus (banteng) ORGANISM Bos javanicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_083877) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_032452875.1-RS_2023_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4074 /organism="Bos javanicus" /mol_type="mRNA" /db_xref="taxon:9906" /chromosome="10" /sex="male" /tissue_type="whole blood" /dev_stage="adult bull" /geo_loc_name="USA: Glen Rose, Texas" /collection_date="2020-06-27" /breed="banteng" gene 1..4074 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:133255095" CDS 1077..3854 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X3" /protein_id="XP_061285678.1" /db_xref="GeneID:133255095" /translation="
MNVDGLAVSSQPEALALEPLSFIPVKGVDDAAPPATSWLNPLGIYDQATTQWLQGQGPSEQESRPPDSQPDRESALLKARVEEFNRKVRESPRDTELWMAFVAFQDELMRSPGLYAVEEGEPETRKRSLRLVLEKKLAILERAIESNPSSVDLKLAKLKLCAEFWEPATLLKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSVSKIQSLYGKCLSTLSAVRDGSIVSHPELPGTEEAMFALFLQQCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKGLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQEWGGWVAVGADDDDEEPEEEDQEIRDKALPRWQIWLAAERSRDHRHWRPWRPDKARKQTEEDCEDPERQVLFDDLGQSLIRLSSPDLQFQMMAAFLQFLGVPSGFSPPTPCLYLAMDENSIFDSELYDEKPLTFLDLSCSGVSCVGRMEPLGGRRWPRGPSREGEEFIRNVFHLALPLFAGRERSQLCVSWLRYEITKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPDNRNSFCLWQQYAHLEWLLGNTEDARKVFEAALGTAGSRGLEDPELCELGLLYAALETELSPPVGGAAPARAVHVLSGLAERRPYGPCTGQVSAVHVLKARRAYEHALQDWLVERRGPDPGPPDRFSHLVSLAKCFMLFQYLTVGVDAAGRVYEQVFAGLRGSVSMEAAGLEGALEAVTLMHTSLLRFHGRVAVHPLAPLREALSEALRLYPGNQLLWRAYVQIQSKSHSASRTRRFFHAITRSAKLLEPWLFAIEAERMRKRLVDAVQRVDGREVHATLPETGLTHRIRALFESAVRSDHGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKALYMDAIEYFPDEMQEVVDLMTEKELRVRLPLEELELLLED"
ORIGIN
cccttctccagcgtttgctgtttcgagtacgcttgtaacaagcttgcgagaacgcttgtgcacagccctttgtgtagggttgcggtttcccttttcttgggtaaatccctgggaatagaattgctgggccacggggcgaggtctgcgtttgggtttcgtttgtttttaaactgccaggcccgttccccccagcggcccgtgagccccggctcccctccaggtcgctggccgcggctcggtgtcgcccggcctttccctcatcctggctgtcctggtgggtctgcgctcggggcaccgtgcttctcgcgggcctttcgttggtgactcacgacgctgaccacttcttcatgtgtttaccggccgcgcgtgtcttttgtgccgtttctgctcacatcttttgctgatgtttgaattgggttgtttgtgtagcacacacacggaaagggcacagttttcctcagctttcctacagatactcagcagtcatgtgtctgtagctccggggacgcctacacgacccataaaagcattttagagcccagcctcttttcctgtagggtagaaaatagccaaatgtaattttatttgacacactttgtctcgggattaaaaaaagaaccttagacctctctattattttctgaagtagacagcacggaggaaaagggactggtgtaggagtcggagggcctggtgtcacctgaggcctcagcgtccttatttaagaacaccgtcgagggggaggcgatggtttccccttgcctgtcacatgcggtgcggcctgaggtggcgtgatgacggtgctgtgcagagcttaggggcgggtaggtactaaggtctggaagacaggcgtgatctgaaattcgtgagacgcagatgaaacagcaggatagaggaaaagtcctcgtacttctctgagtagaaacagtttggagggaagatacaagaggaaaggagactcctgcctcggcctcaacccgaagaagcaatgtatatcttgggaggggacttccacagaaaagaagcgttcccacaagcacatcgagcgctactttacgaagaagagcgtggggttgatgaacgtggacggccttgctgtcagcagtcagcctgaagctctggcgttggagccgctctcctttatcccggtgaagggcgtggatgacgcggctccccctgctaccagctggctgaaccctctggggatttacgatcaagccactacgcagtggttacagggacagggtccttcagagcaggagtccaggccaccagactcacagcccgacagagagagcgcgctcctcaaggccagggtggaggagtttaacaggaaggtccgcgagagccctcgggacacggagctgtggatggccttcgttgctttccaggacgagctcatgagaagtccgggcctctatgccgtggaggaaggagagccggagacgcggaagcggtccctccggctggtcctggagaagaagctggccatcctggagcgggccatcgagagcaacccgagcagtgtggacctgaagctcgccaagctgaagctctgcgccgagttctgggagcccgccactctgctcaaagagtggcagaaactgatcttcttacatcccaacaacacagccctctggcagaaatacctgttgttctgccagagccagttcagcaccttctccgtatcaaaaattcagagtctgtacgggaagtgcttgagcaccctgtccgccgtgagggacggcagcatcgtctcccaccccgagctgcccggcaccgaggaggccatgtttgccctcttcctccagcagtgccacttcctgcggcaggctggccactccgagaaggccgtgtctctgttccaggccatggtcgacttcacgttcttcaagccggacagcgtgaagggcctgcccaccaaaggccaggtggagttctttgagcccttctgggacagcggcgagccccgggccggggagaagggcgcccgaggctggcgagcctggatgcaccagcaggagtggggcggctgggtggccgtcggcgcagatgacgacgacgaggagccggaggaggaagaccaggagattagagacaaggctctgccccggtggcagatctggctggctgccgagcggtcccgagaccacaggcactggaggccgtggcgcccggacaaggccaggaagcagacggaggaagactgcgaggaccccgagagacaggtgttgtttgacgatctcgggcagtctctgatccgactgtccagcccggatctccagtttcagatgatggcggccttcctgcagttcctgggggtgccttccggcttcagcccccccaccccctgcctctatctggccatggatgagaacagcatcttcgacagcgaactttatgatgaaaagcctttgactttcctcgacctctcctgctccggcgtcagctgtgtgggccgcatggagcctctgggtggccggcgctggccccggggtcccagtcgagagggcgaggagtttatccgcaatgtcttccacctggcactgcctctgtttgcaggcagggagcggtctcagctctgcgtctcctggctacggtacgagatcaccaaggtcatttggtgtctgcacactaaaaacaagaagagattaaagtcacaaggaaagaactgcaaaaaactagccaagaatctcctcaaggagccggacaaccgcaacagcttttgcctctggcagcagtatgcgcatctggagtggttgctgggcaacacagaggatgcccggaaggtcttcgaggcggccctgggcactgccgggagccggggcctggaggacccggagctctgtgagctcggcctgctctacgccgcgctggagacggagctgtcgccgcccgtgggcggggccgccccggcccgcgccgtgcacgtgctgagcgggctggcggagcgccggccctacgggccgtgcacgggacaggtgtcggccgtgcacgttttgaaggctcggagggcgtacgaacacgcgctgcaggactggctggtggagcgccgcggccccgacccaggcccccccgaccgcttcagccacctggtcagcctggcgaagtgcttcatgctcttccagtacctgaccgtgggggtcgacgccgctgggcgcgtctacgagcaggtgtttgcggggctcaggggctctgtctccatggaggctgccggcctggagggcgccctggaggccgtcaccctgatgcacaccagcctgctcaggttccacggcagggttgccgtgcacccgctggctcccctgcgagaggcgctctcagaggctttacggttgtacccgggcaaccagcttctctggagggcgtacgtgcagattcagagcaagtcgcacagcgccagcaggaccagaagattcttccacgccatcaccaggtccgccaaactcctggagccctggctgtttgcgatcgaagcggagaggatgcggaagaggctggtggatgccgtgcagagggtggacggtagagaggtccatgccacccttcccgagaccggcctgacgcaccggatcagagccctgtttgagagcgccgtgcggagcgaccacggcagccagtgccccctgctgtggaggatgtacctgaacttcctggtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcactgcagaattgtccttgggcaaaggcgctgtacatggacgccatcgagtacttccccgacgagatgcaggaggtcgtggacctgatgacggagaaggagctgcgggtgcgcctgccgctcgaggagctggagctgctgctggaggactagacgctgggggccgggcccagccccggaacacgggcacgtgcgtgcccagacctgtgccctgaagggtcctccctgacgcgcgtgtctaggctgtcagtctcaccttctgcagtttctgcacatgcgaatgacacaaagctgacgttctgcacacgatacatgtgaatgtgtgtaagcgtgcacagacaaggatcacgccaaagctgtcacggctcgtgtg
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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