LOCUS       XM_060878913            3349 bp    mRNA    linear   VRT 08-NOV-2023
DEFINITION  PREDICTED: Tachysurus vachellii NRDE-2, necessary for RNA
            interference, domain containing (nrde2), partial mRNA.
ACCESSION   XM_060878913
VERSION     XM_060878913.1
DBLINK      BioProject: PRJNA1034989
KEYWORDS    RefSeq.
SOURCE      Tachysurus vachellii
  ORGANISM  Tachysurus vachellii
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Bagridae; Tachysurus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_083469) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030014155.1-RS_2023_11
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 11/04/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..3349
                     /organism="Tachysurus vachellii"
                     /mol_type="mRNA"
                     /isolate="PV-2020"
                     /db_xref="taxon:175792"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /geo_loc_name="China: Wuhan"
     gene            1..>3349
                     /gene="nrde2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins"
                     /db_xref="GeneID:132851933"
     CDS             80..>3349
                     /gene="nrde2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2"
                     /protein_id="XP_060734896.1"
                     /db_xref="GeneID:132851933"
                     /translation="

MALFPAFNGVTDADISKNSGLEWLQNCSFSSVDALSLHQHTTHRDTAERHTPHHTHTSEETSDEDNDDGYVDVKKKRRKKEKKKRRKKQKKRSRDDSVNSNSDTIYPSDLLNRELEPSQRQEDLANVGGVLWLDDLQCPNEKLFYLDRKSDPVNWEYKSLYRAHIARYKRKGRSALGLDSRIQGVSWEDSGPERKRKEKREERYFSPTNRRLLSSETPPTLSVPPTDSDLSIDPASFIPLPPCKEESDSAPQTSTSTDPLRVYDLATSLWLEGKGQPDVKVQVQPPPSDMLMTRVEDFNKQLRENPSDVKMWLEFIQFQDELGSSLSGQGAESERALLDRKLSVVERALQLNPGCVELKLHRLTLGRGLWDGPTQLKEWKKVVFIHPNSASLWKSYIQFTQSQFSSFSVPMVTSVYRKCLSTLSAVQDGQLLSHPPLPGTEHHLLDVFVRQCHFLRQAGHSEKAVCLFQALIEFTFFKPDSVRHLNTKQQVEFFETFYDSGEPRLGESGARGWGTWMKQQERGGWIQTPDTEEEDEIDDEDEIKDKSQPRWRIWLNVESWREANHWLPWRPDRTKGQPEEECEDPDRQVVFDDIGPSLIRVELPELRLRLLLSFLHFLGVPIGSASSLSSLIVDDSTLLDDSALLDETLDLERPLTSHDLPVTGVSAVGHMTSRCDSRRKTVGLYKLGEDFVRNVLEKTLPLFPAQDRRALTLCWMQYEKLKVLRCVHSGSKKSIRVQGKCTKRLLKHLLKQQENRCSLLLWREYGHVEWLLGNIDEARRVFDSALSLGGASGLRDSALCHLCLLYAQLEMEQMCLRGAQSVKTTPVSVTSSRAVYILTTLSEDATYRPFTGEISPMAILKARKAYEHSISEGRSYENAYGLIGCFGLFQYLTVGVDAADSVFTEARKYIKCTKQLEAVCVLHVTLLHHHSRIRAFPLRRVRSVLNDALTLLPHSTSLWRMHLQVDTCYYNAANTRRFLHTITKRNQSILPRLFTLTTEQQRKKRIDAVLRSGLPDSSLPMFPEIGLCNRIRSLFEVAVASEPGAHCPLLWRCYINFVVCDGDVERGRGIFYRALQHVPWVKVLYMDAVS"

     misc_feature    509..802
                     /gene="nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(509..532,539..544,554..559,563..565,569..613,
                     620..628,632..640,662..670,680..685,689..694,701..721,
                     746..757,776..802)
                     /gene="nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    971..1882
                     /gene="nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:462472"
ORIGIN      

cggcgtatgacgtcatatgtgtgcgacagtgcttggttagcttgctagctagcaggttgtacccagtgttagctgcagtatggcgttatttcctgcatttaatggagtgacagatgctgatatttctaaaaactcaggtctagaatggctccaaaattgtagtttcagcagcgtggatgctttgtctctacaccaacacaccacccacagggacacagcggagagacacactccacaccacacacacaccagtgaggagacatctgatgaagacaacgatgatggttatgttgatgtcaagaagaaaaggagaaagaaagagaaaaagaaaaggagaaagaagcagaagaagcgcagcagagacgattcagtgaacagcaactcagacacaatttaccccagtgaccttctgaaccgagaactggaaccatcacagagacaggaggacttggctaatgtgggtggagttttgtggcttgatgatcttcagtgtcccaatgagaagctgttctacttggacaggaagtctgaccctgtgaactgggagtacaaatcactgtacagagctcacattgccaggtataagcggaagggcaggtctgctcttggattggacagcaggattcagggcgtgtcctgggaagactccggcccagaaaggaaacggaaagaaaagagagaggaacgttatttctctcccaccaaccgccgtcttctcagctctgaaactccacccactctctcagtccctcccactgattctgacctatctattgatcctgcttcatttatccccctccccccctgtaaggaagagtctgactccgcccctcagaccagcaccagcactgatccacttcgagtgtatgaccttgcaacctcactgtggctggagggaaaaggtcaaccagatgtcaaagttcaggtgcagccgcctccatcagacatgttaatgacacgagtggaggactttaacaagcaactgagggaaaaccccagtgatgtaaaaatgtggctggagttcatacagtttcaggacgagttgggcagctccctctcggggcagggggcggagtctgagcgtgcactgttggacaggaagttgagtgtggtggagcgtgctcttcagctgaaccccggctgtgtggagttgaagctgcacagactcaccctgggcaggggattgtgggatggcccaacacagctgaaggagtggaagaaggtggtgttcatccacccgaacagtgcctccctgtggaaaagctacatccagttcacccagagccagttcagctccttttctgtccccatggtgaccagtgtatacaggaagtgtctgagcaccctcagtgcggtacaggatggacagctgttgtctcacccaccgctgccagggacagaacaccacctgctggacgtgtttgtgagacagtgccacttcctacgtcaggcgggtcactctgagaaagctgtgtgtcttttccaggctctgattgagttcaccttcttcaaacctgacagtgttagacacctaaacactaaacaacaggtggagttctttgagacattctatgacagcggagagccaaggttgggggagagtggtgccagagggtggggaacctggatgaagcagcaggagagaggaggatggatacaaacacctgatacagaggaggaggatgaaatagatgatgaagatgagattaaagataaatcccagccgaggtggagaatctggctcaatgttgagtcatggcgggaagccaaccattggttaccatggagaccagacagaactaagggccaaccagaggaggaatgtgaggatccagatagacaggtggtgtttgatgatatcggaccatctctgatccgagttgagttgccagaactgcgtctgcgtctcctgctctctttccttcactttctgggcgtgcccattggctctgcttcttctttgtccagccttattgtggatgactccaccctcctggatgactccgccctgttggacgagactcttgaccttgagagacctttgacctcccatgacctcccagtgactggagtcagtgctgtgggtcacatgacctctcgatgtgactctaggaggaagacagtggggttatataaactgggggaggattttgtcaggaatgttctggaaaagaccctcccactgtttccagctcaggacagaagagcactcactctctgctggatgcaatacgaaaaactcaaggtgctgcggtgtgtgcatagtggcagtaagaagagtattagggtgcaggggaagtgcactaagcgtttattgaagcatttactgaagcagcaggagaatcgttgctctttgttgctgtggcgtgagtacggccatgttgaatggttgttaggaaacatagatgaagcacgcagggtttttgactccgccctctcgttgggtggagcatctggcttacgtgactccgccctctgccacctctgcctgctgtatgcacaattagaaatggaacagatgtgtctgcgtggggctcagagtgtaaagaccacacctgtttctgtcacctcctctcgggcagtgtacatactgactacattatcagaggatgccacctataggccttttacaggagagatcagccccatggccatactaaaggcacgcaaagcgtacgaacattccatctcagagggaaggtcatatgagaatgcctatggactgattggctgttttggtctgttccagtatttaacggtgggggtcgatgcggccgactcagtgttcactgaggccagaaagtatattaagtgcactaagcagcttgaggccgtgtgtgttttgcatgtgacactgttacatcatcactcacgcatcagggcgtttcctttgaggcgtgtgaggtccgtgctgaatgatgcgctcaccctgctgccccacagcacatccctttggaggatgcacctacaggtcgacacctgctactacaatgctgccaacacccgacggttcctacacaccataactaaacgcaaccagagcatcctgcctcgactgttcaccttaacaactgaacagcagaggaaaaaacggatagatgctgtgctacggtcagggctcccagacagttctcttcctatgtttccagagatcggcctttgcaaccgtatccgctctctgtttgaggttgccgtggcctcagagcctggtgctcactgccctctgctgtggagatgctacatcaactttgtggtgtgtgatggggatgttgagagaggaagaggaatcttctacagagccctacagcatgtcccctgggtgaaagttctgtacatggatgctgttagc

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