ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2025-10-24 19:07:25, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_060723365 3221 bp mRNA linear INV 03-NOV-2023
DEFINITION PREDICTED: Ruditapes philippinarum uncharacterized LOC132736264
(LOC132736264), mRNA.
ACCESSION XM_060723365
VERSION XM_060723365.1
DBLINK BioProject: PRJNA1033681
KEYWORDS RefSeq.
SOURCE Ruditapes philippinarum (Manila clam)
ORGANISM Ruditapes philippinarum
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
Autobranchia; Heteroconchia; Euheterodonta; Imparidentia;
Neoheterodontei; Venerida; Veneroidea; Veneridae; Ruditapes.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_026853244) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_026571515.1-RS_2023_10
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.2
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 10/30/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3221
/organism="Ruditapes philippinarum"
/mol_type="mRNA"
/isolate="M1"
/isolation_source="lagoon"
/db_xref="taxon:129788"
/chromosome="Unknown"
/sex="male"
/tissue_type="mantle"
/dev_stage="adult clam"
/geo_loc_name="USA: Puget Sound region, Pacific Northwest"
/collection_date="2014-10"
gene 1..3221
/gene="LOC132736264"
/note="uncharacterized LOC132736264; Derived by automated
computational analysis using gene prediction method:
Gnomon."
/db_xref="GeneID:132736264"
CDS 237..563
/gene="LOC132736264"
/codon_start=1
/product="uncharacterized protein LOC132736264"
/protein_id="XP_060579348.1"
/db_xref="GeneID:132736264"
/translation="
MKKRLLDLTLIVLIYSIIFDKGYCQEDIEQGVYHAEFQGRKCIAQMKPVEDPNMEYINHLEIEGYKFPFYCSRATEEATQNKDELLTEVARENTEVDEKSTDTIKDEL"
ORIGIN
agaaataaaactgtatcgcattaaaagcttatgaaatgaaacgttttccaattcggtctgtcgcttcaaccgaacatcgagtttgggtttttaacaggcaatgaacatggcgacaatttataacgcggaaatataaaaatattttttttttgaaaatgatgaaattaataaacacgttcatttcctcgtatacatgtacatatatcattcaaaaagtataaattactgtttcgaacatgaagaaacgtttactagacttaacgcttattgttttgatatattcaataatttttgataaaggttattgtcaagaggatatagaacaaggggtttatcatgctgagtttcaaggccggaaatgtattgcgcaaatgaaacctgttgaggacccgaacatggaatacataaatcatctcgagatagagggctacaaatttcctttctactgttctcgagctaccgaagaagcgactcaaaataaagacgaacttctgactgaggtggctagagaaaataccgaagttgatgaaaaatcaacagatacaatcaaagatgaattatagcattgtgatatgacagaagaccggggagcatcgtcatgagtggatactgtttgttagctaacattcactgtgtcaattatttctttttatttgactccttatataaatacgagggttggtcaaaaagtaataggactgcagctctactgttcacatttttaaatttacgttcacaattttacaagagacaaaatttaatatcggaacatgtcctctatatacactgaaaaaatcaatacataacaattctgtgaaaattttaaaatgataaacgtacgcgtgccggcgagcattaaaacacaatgatgtcgcaaaagaaatacaaaatatagcattttcttacagaaagtattctccctagggctctaagtgtctgaaccatgttactataaattaagtctcgtttgtggaaatgaagagagaaataaagcgatcacattcttattccacttcccgaaagaattgcccggtataaatattctcttctattgagcacagactattatttattaaccttttactccatgagcataattattgcgaaaaatggtcgttttcattgaaaagcctcctgtaacaagttcaaactgctatgaaactatgggaaatgctttaatactgatgaaacttggcacaaatgttaactagaccacagcctttgtaacaccatgctcaatcgtaaatttcctgttaccatggcaacgggggacgtctcaaaattgccaaaaatcactattttgcattgtttttttcccccatcaaaactgatttcaaagtgctgcaacttctcaatgaattgagatagagtaaaaggcttttcagcgtcggttactagttaccctaagatcgacctgaggccatttttagcctgtcacatgtccaaacttttcttgacgatgagggggacttccgccccccttcaaaccccccaaacagaaaggggcacatcccctcaaccccctgatgtaacatttggatgggggacggcgccaaaaaagtggtcacttttttaacaacatttctcaaacgcaaaacagtgttttgggccattttgtcactgtttgaggcctcaaaaagggggggggggggcaaaaagccgtcaaaacacgcttatataagggaaaaggttaaacaaaatcggggaaaataatactaataattaccgggtatcattattatattaatttattgatatagaaatacagtaaaaaccctcaattaaaaccaccttcgggactggactaaagtggtcttataaatttaaattgcggggtggtcttaattgtgaatattctcatcaatgcttacacactttttgaccatggtctattttagtcattttgtatgaacaaacaaaatatatatacctgcaaatacaacttaaaagtatgttataaattaacatctgatggggtgaaagaaattttatatcaaattctgttttgtctgatttcaatatcaatttcaatattaattattatatgatgtaaataattcacccatcaaataaaaaaagtatatcttcgtatattcaatgtgcttaaagcaagataaaacaactgtaaaattaactttctcaccttatttcatacaatatcccgatgatataaggtgttttgacaccttgtgaaattaggtgtcatgcctgaaagcattcaagctgataataacagcaattttaaaatctaggtaggtgttgactttaaatccttctccaaatccctccagaggcgtgcacgtcgcggagaaggcacacggcaggtcaaggtcaagtcatcttaagtaccagaggtgattggttgacctgtcgtgactaactctggagggttggcgctaatgagagccgtttttgtttccgtcagtatggagcttgatgcctggccagtattgtcgtactcctctaccaccaacgaacgaagaataggctacaggaagattcagcttgaaaaagacgtccccgatgtgactaccctagtggaccggcatggatgctatattctcggacagatggttataccggcgccgagtataaataaacttaaactgactgactaactgactttaaatcagtggtctcaatagtggggtcaaataaggaacaaaacaaagaattgggactgaatctggtggtcttaaaagtggataagcgaggtggtcttaattctggatcatgtaaccattgacataaagaacagaaaattccgtacttttaaaaaatggtctcaatagcggggtggtcttaattccggggtggtcttaagtagggattctactgtacacaataaaacagtgtttaaaactatattcaattatttggtcagaaaagaattggtggacccgatgaagacattaaatgtgccccacagttcgcggattgtttaccgtcgatcgttttgtagcctttttgcaattgacgtcctgtcaattttctttctgcctcgcccttctcgtattcgccgtttttgaattcttgcgccagctgaaaacgagtgtcctgagtgtctcgtttccaatgaacatttaacgtttgaacctcgtgttgttcaaatagaaatcattgttgaatccaatcttatcaacttagctttgtttccattttcaaagtccaaaaatgtcgatatcaaaatgaaatacatatcgtaccccctaaagccttgt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]