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2024-10-04 20:18:54, GGRNA.v2 : RefSeq release 225 (Jul, 2024)

LOCUS       XM_060620531            3436 bp    mRNA    linear   MAM 01-NOV-2023
DEFINITION  PREDICTED: Panthera onca NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), transcript variant X3, mRNA.
ACCESSION   XM_060620531
VERSION     XM_060620531.1
DBLINK      BioProject: PRJNA1028623
KEYWORDS    RefSeq.
SOURCE      Panthera onca (jaguar)
  ORGANISM  Panthera onca
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae;
            Pantherinae; Panthera.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_083312) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_028533385.1-RS_2023_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/19/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3436
                     /organism="Panthera onca"
                     /mol_type="mRNA"
                     /isolate="Sample0147"
                     /db_xref="taxon:9690"
                     /chromosome="18"
                     /sex="female"
                     /tissue_type="blood: Jugular"
                     /collection_date="2015-07-29"
                     /collected_by="Julia Jones, Liz McCrae"
     gene            1..3436
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:132670204"
     CDS             145..3309
                     /gene="NRDE2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2 isoform X2"
                     /protein_id="XP_060476514.1"
                     /db_xref="GeneID:132670204"
                     /translation="
MALFPAFAGIGETSGSGSARKELDWLSNPSFCAGAITSLSQQTEGATALVSEGSPLTRSPLKSEPSDESDTNKKPKQTSRKKKKEKKKKRKHHHKKTRRKHGQSSSSGSEPDSDSEKDKTSRSIRDSKKESEKPNREGNAVADTGHRCIWLEDVQALTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGAATEKKHSHKHVERYFTKKSVGLMNIDGVAVGGKTEPPSSEPVSFIPVKASDDVAPPVTTWLNPLGIYDQPTTQWLQGQGPSEQESKQPDSQTDREHALLKAKVEEFNRRVRENPRDIQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLRLVLEKKLAILERAIESNQSSVDLKLAKLKLCSEFWEPSALAKEWQKLIFLHPNDTALWQKYLLFCQSQFSTFTVSKIHGLYGKCLSTLSAVKDGSILSHPALPGTEDAMFGLFLQQCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVVISPDDDDDEPEDEDQEIREKSLPRWQIWLATERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIAQSMIRLSSQDLQFQLVAAFLQFLGVPSGLSPPASCLYLAMDENSIFDDGLCDEMPLTFLNLSSSGVSCVGCSDPLGRRRWTRGHNREGEEFIRNIFHLVMPLFSGRERSQLCFSWLRYEIEKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNSFCLWKQYAHLEWLLGNTEDARKVFDTALSMAGGRDLRDRELCELGLLYAGLEAELLPDPRGAATARAVHVLTRLTEQGPCGPYSGQALAVHILKARKAYEHALQDCLGDSCVSAPAPSDSFDRLTSLVKCFMLFQYLTVGIDAAVRVYEQVLAKLKGSIPPGGSGPEDGARAQGPHGALEAVTLMHTSLLRFHTKVSLYPLAPLRQALSEALRLYPGNQVLWRAYVQIQSRSHAASETRRFFDAVTRSTKLLEPWLFAIEAEKMRKRLVESVQRW"
ORIGIN      
ccaggtccccgggtcaagccccagggattgcgagtgggaaaaaccacacttcccagagtgcaccgcaaccgcgaaggcctcactaccggcgtccgctcgccggcgccatttctggagaggggaacggcggtgcggcctgcagtcatggcgctgttcccggcctttgcaggcattggtgagacttccggtagcggcagcgccaggaaagaattagactggctgagcaacccaagcttttgtgctggagccataacctctctgagccaacaaactgaaggggccacagccctggtttctgaagggtcacctctgacaaggagccctctgaaatcagagccttcggatgaaagtgacactaacaaaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcatcaccacaagaaaactaggagaaaacacggccagtccagtagcagtgggtctgagccagatagtgattctgaaaaggataaaacttccagaagcattagagacagtaaaaaggaatccgagaaaccaaaccgagaagggaacgccgtcgctgatactgggcaccgctgcatctggcttgaggacgttcaggctctcacaggggaaaccttcagaacagataagaaaccggatcctgcaaactgggagtacaagtctctctaccgaggagatatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgcatatcctgggagggggctgccacagaaaagaagcactcacacaagcatgtcgagcgctatttcacgaagaagagcgtgggactgatgaacattgacggagtcgccgttggcggtaaaaccgaacctccctcatctgagccggtctcatttatcccagtgaaggcctcggatgatgtggctcctcctgttacgacctggttgaaccctctggggatttacgatcagcccaccacgcagtggttacaaggacagggtccttcagagcaagaatcaaagcagccagactcacagacagacagagagcatgccctgctcaaggccaaggtggaggagtttaacaggagagttcgggagaatccccgggatattcagctgtggatggcatttgttgcttttcaggacgaggtcatgaagagccctggcctgtatgccatcgaggaaggagagcaggaaaagcggaagcggtctctgaggctcgttctggagaagaagctggccatcctggagcgggccatcgaaagcaaccagagcagcgtggacctgaaactcgccaagctgaagctctgctccgagttctgggagccctccgccctggccaaagagtggcagaaactgatctttctgcatcccaacgatacagccctgtggcagaaataccttttattctgccagagccagtttagcacctttacggtgtcaaaaattcacggtctgtacggcaagtgcttgagcaccttgtctgccgtgaaggacggcagcatcttatcgcaccccgccctgccgggcaccgaggacgccatgtttggtctctttcttcagcaatgccacttcctgcggcaggctggtcactctgagaaggcggtctctctgttccaggccatggtcgacttcaccttcttcaaacccgacagtgtgaaagacctgcccaccaaaggacaggtggaattctttgagcccttctgggacagtggggagccccgggttggcgagaagggcgcccgaggctggagagcgtggatgcaccagcaggagcggggcggctgggtggtcatcagtccagatgatgatgatgatgagccagaagatgaggaccaggaaataagagagaagagcctgcccaggtggcagatctggcttgccaccgagcggtcccgagaccagaggcactggcggccgtggcgccctgataagaccaagaagcaaaccgaggaagactgtgaggatccagagagacaggtgctgtttgatgacattgcccagtctatgatccgtctttccagccaggatcttcagtttcagctggttgcggcctttctgcagttcctgggcgtgccttctggcctcagccctccagcctcctgcctctacctggccatggatgagaacagcatcttcgatgacgggctttgtgacgaaatgccactgacttttctcaacctttcctcttccggtgtcagctgtgttggctgctcagacccactgggccgccggcgctggacccggggtcacaatcgagagggcgaggagttcatccgcaacatctttcaccttgtgatgcctttgttttcaggccgggagaggtctcagctctgcttctcttggttacggtacgagatcgagaaggtcatttggtgtctgcacactaaaaacaagaagaggctaaagtcacagggaaagaactgcaagaaactagccaaaaatctcctgaaggagccagaaaaccgcaacagtttctgcctctggaagcagtacgcacatctggagtggctgcttggcaacaccgaggacgccaggaaggtgttcgatacggcgctcagcatggcggggggcagagacctgagggaccgtgagctgtgtgagctcggcctcctctacgccgggctggaggcggagctgttgccggacccgagaggggccgccacggcgcgagccgttcacgtactgaccaggctgacggagcaggggccctgcgggccctactccgggcaggcgctggccgttcacatcttgaaagctcggaaggcgtacgaacacgcgctgcaggactgtttgggcgacagctgtgtgtccgctccggctcccagcgactccttcgaccgcctgactagcctggtgaaatgcttcatgctctttcagtacttgaccgtagggatcgatgcggccgtgcgggtgtacgagcaggtgctcgcaaaactgaagggctctattcccccagggggctccggcccggaggacggagcccgcgcccagggcccccacggcgcgctggaggccgtgacgctgatgcacacgagcctgctcaggttccacacgaaagtcagcctttaccccctggctcctctgcgccaggctctctccgaggcgttaaggttgtacccaggcaaccaggtgctttggcgggcgtacgtgcagattcagagcaggtcccacgcagccagtgagaccagaagatttttcgacgcggtcaccaggtctaccaaactcttggagccttggttgtttgcgatcgaggccgagaaaatgaggaagagactggtggagagtgttcagagatggtagagaggtccacgccacaattcccgagaccggcttgacacatcgcatcagagccctgtttgaaaatgcgttgcggagcgacaacggcagccagtgccccttactgtggaggatgtacctgaattttttg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]