2024-10-04 20:18:54, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_060620531 3436 bp mRNA linear MAM 01-NOV-2023 DEFINITION PREDICTED: Panthera onca NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X3, mRNA. ACCESSION XM_060620531 VERSION XM_060620531.1 DBLINK BioProject: PRJNA1028623 KEYWORDS RefSeq. SOURCE Panthera onca (jaguar) ORGANISM Panthera onca Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_083312) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_028533385.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/19/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3436 /organism="Panthera onca" /mol_type="mRNA" /isolate="Sample0147" /db_xref="taxon:9690" /chromosome="18" /sex="female" /tissue_type="blood: Jugular" /collection_date="2015-07-29" /collected_by="Julia Jones, Liz McCrae" gene 1..3436 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:132670204" CDS 145..3309 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X2" /protein_id="XP_060476514.1" /db_xref="GeneID:132670204" /translation="
MALFPAFAGIGETSGSGSARKELDWLSNPSFCAGAITSLSQQTEGATALVSEGSPLTRSPLKSEPSDESDTNKKPKQTSRKKKKEKKKKRKHHHKKTRRKHGQSSSSGSEPDSDSEKDKTSRSIRDSKKESEKPNREGNAVADTGHRCIWLEDVQALTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGAATEKKHSHKHVERYFTKKSVGLMNIDGVAVGGKTEPPSSEPVSFIPVKASDDVAPPVTTWLNPLGIYDQPTTQWLQGQGPSEQESKQPDSQTDREHALLKAKVEEFNRRVRENPRDIQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLRLVLEKKLAILERAIESNQSSVDLKLAKLKLCSEFWEPSALAKEWQKLIFLHPNDTALWQKYLLFCQSQFSTFTVSKIHGLYGKCLSTLSAVKDGSILSHPALPGTEDAMFGLFLQQCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVVISPDDDDDEPEDEDQEIREKSLPRWQIWLATERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIAQSMIRLSSQDLQFQLVAAFLQFLGVPSGLSPPASCLYLAMDENSIFDDGLCDEMPLTFLNLSSSGVSCVGCSDPLGRRRWTRGHNREGEEFIRNIFHLVMPLFSGRERSQLCFSWLRYEIEKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNSFCLWKQYAHLEWLLGNTEDARKVFDTALSMAGGRDLRDRELCELGLLYAGLEAELLPDPRGAATARAVHVLTRLTEQGPCGPYSGQALAVHILKARKAYEHALQDCLGDSCVSAPAPSDSFDRLTSLVKCFMLFQYLTVGIDAAVRVYEQVLAKLKGSIPPGGSGPEDGARAQGPHGALEAVTLMHTSLLRFHTKVSLYPLAPLRQALSEALRLYPGNQVLWRAYVQIQSRSHAASETRRFFDAVTRSTKLLEPWLFAIEAEKMRKRLVESVQRW"
ORIGIN
ccaggtccccgggtcaagccccagggattgcgagtgggaaaaaccacacttcccagagtgcaccgcaaccgcgaaggcctcactaccggcgtccgctcgccggcgccatttctggagaggggaacggcggtgcggcctgcagtcatggcgctgttcccggcctttgcaggcattggtgagacttccggtagcggcagcgccaggaaagaattagactggctgagcaacccaagcttttgtgctggagccataacctctctgagccaacaaactgaaggggccacagccctggtttctgaagggtcacctctgacaaggagccctctgaaatcagagccttcggatgaaagtgacactaacaaaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcatcaccacaagaaaactaggagaaaacacggccagtccagtagcagtgggtctgagccagatagtgattctgaaaaggataaaacttccagaagcattagagacagtaaaaaggaatccgagaaaccaaaccgagaagggaacgccgtcgctgatactgggcaccgctgcatctggcttgaggacgttcaggctctcacaggggaaaccttcagaacagataagaaaccggatcctgcaaactgggagtacaagtctctctaccgaggagatatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgcatatcctgggagggggctgccacagaaaagaagcactcacacaagcatgtcgagcgctatttcacgaagaagagcgtgggactgatgaacattgacggagtcgccgttggcggtaaaaccgaacctccctcatctgagccggtctcatttatcccagtgaaggcctcggatgatgtggctcctcctgttacgacctggttgaaccctctggggatttacgatcagcccaccacgcagtggttacaaggacagggtccttcagagcaagaatcaaagcagccagactcacagacagacagagagcatgccctgctcaaggccaaggtggaggagtttaacaggagagttcgggagaatccccgggatattcagctgtggatggcatttgttgcttttcaggacgaggtcatgaagagccctggcctgtatgccatcgaggaaggagagcaggaaaagcggaagcggtctctgaggctcgttctggagaagaagctggccatcctggagcgggccatcgaaagcaaccagagcagcgtggacctgaaactcgccaagctgaagctctgctccgagttctgggagccctccgccctggccaaagagtggcagaaactgatctttctgcatcccaacgatacagccctgtggcagaaataccttttattctgccagagccagtttagcacctttacggtgtcaaaaattcacggtctgtacggcaagtgcttgagcaccttgtctgccgtgaaggacggcagcatcttatcgcaccccgccctgccgggcaccgaggacgccatgtttggtctctttcttcagcaatgccacttcctgcggcaggctggtcactctgagaaggcggtctctctgttccaggccatggtcgacttcaccttcttcaaacccgacagtgtgaaagacctgcccaccaaaggacaggtggaattctttgagcccttctgggacagtggggagccccgggttggcgagaagggcgcccgaggctggagagcgtggatgcaccagcaggagcggggcggctgggtggtcatcagtccagatgatgatgatgatgagccagaagatgaggaccaggaaataagagagaagagcctgcccaggtggcagatctggcttgccaccgagcggtcccgagaccagaggcactggcggccgtggcgccctgataagaccaagaagcaaaccgaggaagactgtgaggatccagagagacaggtgctgtttgatgacattgcccagtctatgatccgtctttccagccaggatcttcagtttcagctggttgcggcctttctgcagttcctgggcgtgccttctggcctcagccctccagcctcctgcctctacctggccatggatgagaacagcatcttcgatgacgggctttgtgacgaaatgccactgacttttctcaacctttcctcttccggtgtcagctgtgttggctgctcagacccactgggccgccggcgctggacccggggtcacaatcgagagggcgaggagttcatccgcaacatctttcaccttgtgatgcctttgttttcaggccgggagaggtctcagctctgcttctcttggttacggtacgagatcgagaaggtcatttggtgtctgcacactaaaaacaagaagaggctaaagtcacagggaaagaactgcaagaaactagccaaaaatctcctgaaggagccagaaaaccgcaacagtttctgcctctggaagcagtacgcacatctggagtggctgcttggcaacaccgaggacgccaggaaggtgttcgatacggcgctcagcatggcggggggcagagacctgagggaccgtgagctgtgtgagctcggcctcctctacgccgggctggaggcggagctgttgccggacccgagaggggccgccacggcgcgagccgttcacgtactgaccaggctgacggagcaggggccctgcgggccctactccgggcaggcgctggccgttcacatcttgaaagctcggaaggcgtacgaacacgcgctgcaggactgtttgggcgacagctgtgtgtccgctccggctcccagcgactccttcgaccgcctgactagcctggtgaaatgcttcatgctctttcagtacttgaccgtagggatcgatgcggccgtgcgggtgtacgagcaggtgctcgcaaaactgaagggctctattcccccagggggctccggcccggaggacggagcccgcgcccagggcccccacggcgcgctggaggccgtgacgctgatgcacacgagcctgctcaggttccacacgaaagtcagcctttaccccctggctcctctgcgccaggctctctccgaggcgttaaggttgtacccaggcaaccaggtgctttggcgggcgtacgtgcagattcagagcaggtcccacgcagccagtgagaccagaagatttttcgacgcggtcaccaggtctaccaaactcttggagccttggttgtttgcgatcgaggccgagaaaatgaggaagagactggtggagagtgttcagagatggtagagaggtccacgccacaattcccgagaccggcttgacacatcgcatcagagccctgtttgaaaatgcgttgcggagcgacaacggcagccagtgccccttactgtggaggatgtacctgaattttttg
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@meso_cacase at
DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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