2024-04-30 09:03:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_060278307 7847 bp mRNA linear VRT 23-OCT-2023 DEFINITION PREDICTED: Zootoca vivipara serine/arginine repetitive matrix protein 2 (LOC118079504), transcript variant X6, mRNA. ACCESSION XM_060278307 VERSION XM_060278307.1 DBLINK BioProject: PRJNA1028606 KEYWORDS RefSeq. SOURCE Zootoca vivipara (common lizard) ORGANISM Zootoca vivipara Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Zootoca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_083284) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963506605.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/17/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7847 /organism="Zootoca vivipara" /mol_type="mRNA" /db_xref="taxon:8524" /chromosome="9" gene 1..7847 /gene="LOC118079504" /note="serine/arginine repetitive matrix protein 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:118079504" CDS 2848..7458 /gene="LOC118079504" /codon_start=1 /product="serine/arginine repetitive matrix protein 2 isoform X4" /protein_id="XP_060134290.1" /db_xref="GeneID:118079504" /translation="
MVKSKKKKNQQNNGYCQDYRWGPGGNMPPWMGGPCPDDKWGPGGDMPPWMGGPYPDDKWGPGGDMPPWMGGPCPDDKWGPGGDMPPWMGGPCPDDMRGPGRNMPPWMRDPCLDDTGGPGGDMPPWAGGPCPDDMRGPGRYMPPWMRDPCLDDTGGPGGDMPPWAEGPCPDDTGGPGGNMPPWMRDPCPDDMWQPRKRRKYMQPNMRGPCPNMGDPRENMYSGPNAPDQRQCRTFGGPGKSLSGKEQPMENGRDNGPLPPGNCSSDQPASLNLFDKNNFKKRKDQPTSRNAAESASNTQKHYRMLTEEGAARILSNFGLSTEDLVEFGHYSDDQLKPENMAMILRDIVERKKARQLPTSSQGKEEETSSRHGGSDSLMKTGPVVPSAAQPTTTPAASFMPQSSVSPSPSMMKDYHAVSPTVLPHVCSLCKIECANTTDWNLHVGTTAHSKKCAQLRQQYPDWNPEDCSLLQRHEGDKKEKHIAMPCSTSSNSNASQHSVPGHASSQTQSHSVPGHASSQTQSQSRSSRSSERPSSPSLSSQSSSIQRRELGISTRSPASSAEAGSSRQPPAKSDVAEQPPNTSDAQKVKRLPTLSMINDYYAASPKIFPHVCSLCNVECRHLKDWNLHVGTTAHSEKRVQLRQQYPDWNPEDCSLLQRHEGAKKEKHIAMPCSTSSNSNASQHSVPGHASSQTRSRSRSSERSRRKRSRSRSSERSRRKRSRSRSSERSRRKRSRYRSPRCRSLSSKRPSSPSSSSQISSTRRRELGRSTRSPASSAKAGSSRQPPAKSGVGEQPPNKSEHPLQTNPGHQKLPKKEGATLEQGDRQPPAKSGVGEQAPNKSDAQKLKRLPTLSMINDYYAASPRIFPHMCSLCNIECRHLMGWNLHVSTTAHSEKCAQLRQQHPDWNPEDCSLLQRDEGDKKEKHIAMPCSTSSNLNASQHSVPGHASSQTRSQSRSPGPHSRKRSRSRSSERSRRKRSRSRSSERSRRKRSRSRSSERSRRKRSRSRSSERSRRKRSRSRSSERSRRKRSRSRSSERSRRKRSRSRSSERSRRKRSRSRSSERSRRIQSQYRSSQHCRRTQSQSRSSEGCRTQLRSRIPRCRSSERPSSSSQSSSIQRRELGRSTRSPASSAKAGSSRQPPAKPDVGEQPPNKSEHPLQTNPGHQKLPKKEGATLEQGDRQPPAKSGVGEQPPNKSEHPLQTNPDHQKLPKKEAATQEQGDQQREDLLHLVLTPLAEQSVMQALSVLQSGGVVGAGLAQGTSLPPLPPVQIDPASLSLVSMMQLVATQVVEAALASKETSSVQGRPSVAGSPQLSIPAESEEKKQEGSQEVVPGFVPSCSGLAAVRIWIVGHSIVHWASLRAMESGLGRHLGLPNYVSVSWMSRCGMRWDEFLPMVKAKVSCEGPPAAMVVQLGENDLALVHSFSLRLRMQNDLEELAAAHPGLKIFWSEFLQRRVWLGSRCPTAIERSRKRVDHAVGKKVVALGGSVIHHAGITLKDAGLYRPDGVNLSNAGNDVWLSNVSVELMGWLQMCWLQV"
polyA_site 7847 /gene="LOC118079504" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tcgggggaccggagagggagggtccgcgcctggagaggcctcgttctccttcctcccctcgccgccatggctccgaggcgtcttcgtcctctgcctcagggagggaaagagcgggccctgagtggctgcccccataggcctttccagttgccaggcagaagccggaatggcgggtcccctgggaggaggaggagggggcgcggctgttgttgtaattaccatttatatatatatatgtatatatatatatatatatgtatatatataattggccaagggagccggtgtacagcttccaggtcatgtggccaacatgacaaagccgcttctggcaaacgcagagcagcacatggaaacgccgtttaccttccattcttattaatggaattaccattcttattaattgtggttcataccccgcccatcaggctgggtttcctcagccactctgggcggcttccaacaaaatattaaaattcggtacaataattcatcaactattaaaagctttcctaaacagggctgccgccttgttgttattgttgttcatggttgttttcttcttgttattactactactacagaccctccaagtgtcgctgttttccagggacagttgcggatttacagaagccttcccaatttttaatatgatcccggaatgtcccattttccctttggacagtggagtccaaacttttttcaaagggggccagatttgatgaagtgaagggctgtgagggccgaccaaagttcttgaccttttttttaggattgtagtgcttgaaggtgtttttttttaaaaagggctgaagttgttgagggtttttttaggattttacccctgccttaggacgtccctgttttcatgggagaaatgttagagggtctggagttacgtgacccccaagccaaagaaataagtaactgtacaacctttagaagacatctcaaggcagccctggatagggaaggttttattatatttttatatatgtcggaagctgcccagagtggctgggaaacccagtcagatgggtggggtataaagagtaaaattatcatcatggaatgggacatccctattttcattagagaaaggttggagggcatgtttctgccttggtcagaccacgcttggagtcctgtgttcggtttcggggcaccacaatttaaggaggagatcaacaagttggattgtgtgcagaaaagagtgacccagatgaccaagggtctggaaaccaatcctgaggagggtgctaggtatgttaagcctggagaagaggacgcggagagctgagataagttgtagccaaaaatacggtattcaacccccaaggcaaatcaggcttcttgtcaaaatttgcagactttcagctgtttgccacgagcaaatcaaacaaaaccagtagaaatgactcagcagaagggatgcttcaagtggcttccccaaattcagctgaaatggcaacttataaattgtaaattttgataataaacccaatttgcaatgggggttgaataattttgattgcaactgtatgaaggccagttctaagtgtgaagctcttctccccttgtgtttcgcacttcttgtgagcctgaaggtaggggcttgctttgttctgttggacagctgagtaacaaatgctataaataaggtaaaacaatgtgatgtatgtcagggcaaaaatatcccttaccttcacatctttccttgggggggtctgagctagcagtgatggaccaggaacgagtccttgaggtggtggtagtagtaccctgtttcctttattttaagacatagtcataaaataagccatagcaggatttttaagtattaaaataagacatcccctaaaaataagccatagtgtgtttttgtgaggggggggaatataagaaagtgtcttttgtttttgaagaaacacagtagtagtagtaataagatgtctgtcttcccccagagactctggggggcctccaacacaagacgacctcagccatcaaaaacagggctacctttggatgtctgccttggcagtggcacccaccttgtgggacaacctcccgtcagttaaggaagtaaacaattatctgacttttagaagacatctaaaggcagtccttctgtgtgcctcctcaagaggtctggagggtggcaacacgagagcagggtcttttctgcagaggctatccccggggaggcttgcctggtggcttccttattttaggctccaggcagaaaatttcctcgtctgctaagcctttggctaattgacaactgatgcccttttaaactatgtggggaattttgtgtgtgtggtttttattgtcaagtgccctgtaatcctcagataaaaggtaatacagaaatttaataaataataccagtaatagtgttaataactatgcactggagacttcgtagagctgaacaatactcctaccttctaaaaatggccacccagtaagaactgaaagcatcacgaagctgtgtcgcccacccacaatttggataggtaccctattataataccatgatctatattcctaattaccatcaactattaggattcctccacctctccctggaggactatcctcagcacaagaggacaactgaagcctctgcacccctccttcctttctgattacattttgtgtttttactttcagcttggtggtggtgtctgctgtgaattgcagatttggcatttccctccgtagtgtccctctgcaggttgttcagtttaagaccaagcaatctcagtggttgaaccctgttgcttctgaccattatgccacacttcaggcttcattaatttgacacaggtgtaattagtcatggtcaagtctaaaaaaaagaaaaaccaacagaataatgggtattgccaggattataggtggggacctggaggaaatatgcccccatggatgggaggtccttgcccagatgacaagtggggacctggaggagatatgcccccatggatggggggtccttacccagatgacaagtggggacccggaggagatatgcccccatggatgggaggtccttgcccagatgacaagtggggacccggaggagatatgcccccatggatgggaggtccttgtccagatgacatgagaggaccgggaagaaatatgccgccatggatgagagatccttgtctagatgacacggggggacccggaggagatatgcccccatgggcgggaggtccttgtccagatgacatgaggggaccgggaagatatatgcccccatggatgagagatccttgtctagatgacacggggggacccggaggagatatgcccccatgggcggaaggtccttgtccagatgacacggggggaccgggaggaaatatgcccccatggatgagagatccttgtccagatgacatgtggcaaccgaggaaacgcagaaaatatatgcagccaaatatgagaggcccctgtcctaatatgggtgatcctagagagaacatgtattcaggacctaatgcacctgaccaaaggcagtgtaggacttttggagggccaggaaagtcattgtctgggaaggagcagccgatggagaatggtcgggacaatggtccattgccacctggtaattgtagctcagatcagcctgcttcattaaatttgttcgataaaaataattttaaaaaaaggaaagatcagcccacttcaagaaatgctgcagaaagcgcctcaaatactcagaagcattacagaatgcttacagaagagggtgctgcaagaattctatcaaactttggcttatctactgaagatttggtggaatttggccattattcagatgatcagctgaagcctgaaaacatggctatgattttgagggacatcgtggagcgcaagaaggctcgtcagttgcccacttcatctcagggcaaagaagaggaaacctctagcagacatggcggatctgattccctgatgaaaacaggacctgtggtaccttcagcagctcaacccacaacaacacctgcggcttcatttatgcctcagtcttcagtatctccatctccgtcaatgatgaaagattatcatgctgtgtcaccaacagtacttccacacgtgtgttctctatgtaaaatagaatgtgcaaatacgacggactggaatctgcacgtgggcactactgcacactccaagaaatgtgctcagctacgccagcagtatcctgactggaatccagaagactgctctttgttacagagacatgaaggtgataagaaggaaaaacatattgcaatgccatgctctaccagttctaactcgaatgcttcacaacactcagtccctggccatgcctcgagtcagactcagtcacactcagtccctggccatgcctcgagtcagactcagtcacaatctaggagctccaggtcttcagagcgaccaagctcccccagcttgagttctcaaagctcttctatccagaggagagaactaggaatatcaactagatctccagcgtcctctgcagaagcaggaagctctaggcaacctccagccaaatctgatgtggcagaacaaccacccaacacgtcagatgcccagaaagtgaagagattgccaactctgtcgatgattaatgattactatgctgcatctccaaaaatatttccacatgtgtgttctctgtgtaatgtggaatgtagacatttgaaggactggaatctgcacgtgggtactactgcacactccgagaaacgtgttcagctacgccagcagtatcctgactggaatccagaagactgctctttgttgcagagacatgaaggtgctaagaaggaaaagcatattgcaatgccatgctctaccagttctaactcaaatgcttcacaacactcagtccctggccatgcttcgagtcagactcggtcacgatctaggagttctgaacgtagcaggagaaaacggtcacgatctaggagttctgaacgtagcaggagaaaacggtcacgatctaggagttctgaacgtagcaggagaaaacggtcacgatataggagccccagatgtaggtccttgtcttcaaagcgaccaagctcccccagctcgagttctcaaatctcttctacccggaggagagaattgggaagatcaactagatctccagcgtcctctgcaaaagcaggaagctccaggcaacctccagccaaatctggtgtgggagaacaaccacccaacaagtcagagcatccactgcagacaaatcccggccatcagaagctgcccaagaaggagggagcaacactggaacaaggagacaggcaacctccagcgaaatctggtgtgggagaacaagcacccaacaagtcagatgcccagaagctgaagagattgccaactctgtcgatgattaatgattactatgctgcatctccaagaatatttccacatatgtgttctctgtgtaatatagaatgtagacatttgatgggctggaatctgcacgtgagcactactgcacactccgagaaatgtgctcagctacgccagcagcatcctgactggaatccagaagactgctctttgttacagagagatgaaggtgataagaaggaaaaacatattgcaatgccatgctctaccagttctaacttgaatgcttcacaacactcagtccctggccatgcctcgagtcagactcggtcacaatctaggagccctgggccccacagcagaaaacggtcacgatctaggagttctgaacgtagcaggagaaaacggtcacgatctaggagttctgaacgtagcaggagaaaacggtcacgatctaggagttctgaacgtagcaggagaaaacggtcacgatctaggagttctgaacgtagcaggagaaaacggtcacgatctaggagttctgaacgtagcaggagaaaacggtcacgatctaggagttctgaacgtagcaggagaaaacggtcacgatctaggagttctgaacgtagcaggagaaaacggtcacgatctaggagttctgaacgtagcaggagaatacagtcacaatataggagttctcagcattgcaggagaacacagtcacaatctaggagttctgaaggttgcagaacacagttacgatctaggatccccagatgtaggtcttcagagcgacccagctcaagttctcaaagctcttctatccagaggagagaactaggaagatcaactagatctccagcgtcctctgcaaaagcaggaagctccaggcaacctccagccaaacctgatgtgggagaacaaccacccaacaagtcagagcatccactgcagacaaatcccggccatcagaagctgcccaagaaggagggagcaacactggaacaaggagaccggcaacctccagccaaatctggtgtgggagaacaaccacccaacaagtcagagcatccactgcagacaaatcccgaccatcagaagctgcccaagaaggaggcagccacacaggaacaaggagaccagcaacgtgaagatctgttgcacttggtattgacgcctcttgcagaacaaagtgtcatgcaggccctgtcggtgctgcagtctggaggtgtagtgggtgctggactcgcccaaggaacgagcttgcccccacttcctcctgtgcagatcgatccagcatccctatcccttgtctccatgatgcagctggttgcaacacaggtggtggaagctgccttagcctccaaggagacctcaagtgtgcagggaagaccaagtgtggctggaagtccccagttaagtattcctgcagaaagcgaagaaaagaagcaggagggcagtcaggaagtggtgccaggatttgttccttcttgctcaggtctagcagccgtgcgtatttggattgtcggccacagcattgtgcactgggccagtctgcgggctatggagtctggactggggcgccatcttggccttcccaattacgtgagcgtatcctggatgtccagatgtggaatgcgatgggatgaatttctcccaatggtgaaggcaaaggtgtcctgtgaaggacctcccgcagcgatggtggtgcaactgggcgagaatgatttggcgttggtacatagctttagtttgcgtttacgcatgcaaaatgacttggaagagctggcagctgctcaccctggactcaaaatattttggtcggaatttctacagcgacgtgtgtggcttggtagccgctgcccaactgccatcgaaaggtccaggaagcgcgtggatcatgccgtgggcaagaaggttgttgccctcggaggctctgttatccaccatgcgggcattactttaaaggatgctggcttgtacaggccagatggtgtaaatctttccaatgctggaaatgatgtttggctgagcaacgtgtcagtggagttgatgggttggttgcagatgtgttggttgcaggtgtgagtggtttggcggtaagcacaggtgttcgtgtggcagttaggcattggttcaaggtgtggtcaaggggaggttgtcacacctgcccctcccaatgcgcgaatggggtattctgttaaaggaatccaggggctcgccttgcttttctccaatcccctttcaggtgttagggccacgccagagcccctgggagcatttggggtgagcttgagactgcctggtccaatgctcccccagttttcccttactgacctctggtgtggtccagttgtcaatggctgccctgccaaggtgcacgggcagttagtcgggaaccaatgcctaagcaaactactcacattctgtaattgataaaattgtggccagaattaatgccagtaaataatcttaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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