2024-10-18 15:32:47, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_058999546 3401 bp mRNA linear VRT 18-AUG-2023 DEFINITION PREDICTED: Acipenser ruthenus protein argonaute-1 (LOC117413876), transcript variant X1, mRNA. ACCESSION XM_058999546 VERSION XM_058999546.1 DBLINK BioProject: PRJNA1003472 KEYWORDS RefSeq. SOURCE Acipenser ruthenus (sterlet) ORGANISM Acipenser ruthenus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081213) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_902713425.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/10/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3401 /organism="Acipenser ruthenus" /mol_type="mRNA" /db_xref="taxon:7906" /chromosome="25" gene 1..3401 /gene="LOC117413876" /note="protein argonaute-1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 55 Proteins" /db_xref="GeneID:117413876" CDS 369..2948 /gene="LOC117413876" /codon_start=1 /product="protein argonaute-1 isoform X1" /protein_id="XP_058855529.1" /db_xref="GeneID:117413876" /translation="
MEPGTPGAGLAGPFLPQQLQQVFQAPRRPGLGSIGKPIRLLANYFQVEIPKMDVHHYEVDIKPEKCPRRVNREVVEYMVQHFKPQIFGERKPVYDGKRNIYTVTALPIGNEQVDFEVTIPGEGKDRIFKVSIKWVAMVSWRLLHDALVSGRVPVPLDSVQALDVAMRHLSSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIAEQPRSLSDSQRVRLTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNGSYNLDPYIQEFGIKVKDDMVEVTGRVLPAPILQYGGRNRAVATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEEEYQPGITYIVVQKRHHTRLFCADRSERIGKSGNIPAGTTVDTSITHPFEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSGEGSHISGQSNVRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 474..866 /gene="LOC117413876" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 894..1046 /gene="LOC117413876" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1047..1409 /gene="LOC117413876" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1203..1205,1248..1250,1290..1292,1302..1304, 1356..1358,1377..1379,1383..1385) /gene="LOC117413876" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1542..2819 /gene="LOC117413876" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1953..1955,1965..1967,2001..2012,2019..2021, 2043..2045,2052..2054,2064..2066,2076..2078) /gene="LOC117413876" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2157..2159,2163..2165,2373..2375,2787..2789) /gene="LOC117413876" /note="active site" /db_xref="CDD:240015" ORIGIN
ctctgtctttgttcagcagcttggaggctcttgtgcggagagagacgagctgacaaacccgagctgggaggctagatctccgaacagcaaagccatcgagtccgagcagacgagactgcaccgccgagcgcagcaagacgaggggggcgtgcagcggctcctgcgtctcacagcgccgggagagctgccggcttgtagctgtacgctcaccggacacggggtctaggggctccgagaggggacgggggacggaaaagggggtctcgcttgaaggcgcagacaggaggcggggtgcagtgttgatgcgataatattattttataaaattccgaaattccccggagcggctcagcggcagagtgtatgggatggaaccggggacgcctggagccgggctggcaggtcccttcctgccccagcagctgcagcaggtgtttcaggctcctcgccggccggggctcggctccatcgggaagcccatcaggctgctggcaaactacttccaggtggagatccccaagatggacgtgcaccactacgaggtggacatcaagccagagaagtgtccccggcgcgtcaacagggaggtggtggagtacatggtgcagcatttcaaaccccagatcttcggcgagaggaagccggtctacgatggaaagaggaacatctacacagtgacagcgctgcccatcggcaacgagcaggtggatttcgaggtgacgatccctggtgaagggaaggaccggatattcaaggtgtcgataaagtgggtggcgatggtgagctggcggctgctgcacgacgcgctggtcagtggccgggtcccagtcccgctggactctgtgcaggcgctggacgtggccatgcggcacctctcctccatgaggtacactccagtggggcgctccttcttctcccctcccgaggggtactatcacccgctgggcgggggcagggaggtgtggtttgggttccaccagtccgtgcggcccgccatgtggaatatgatgctgaatattgacgtgtcggccactgcgttttacaaagcccagcctgtgattgagttcatgtgtgaggtgctggatatccgcaacatcgccgagcagccccgatccctcagcgattctcagagggtgcgactcacaaaggaaatcaaaggcctgaaggtggaggtgactcactgtgggcagatgaagaggaaataccgagtgtgcaacgtgacccgtcggcccgccagccaccagacgttccctttgcagctggagaacggccaggcaatggagtgcacggtggctcagtacttcaaacagaagtacagcctgcagctcaagtacccgcacctgccctgcctgcaggtgggccaggagcagaagcacacctacctgcccctggaggtgtgtaacatcgtagcggggcagcgctgtatcaagaaactgacggataatcagacttccaccatgatcaaagcgaccgcgcgctcagcacccgacaggcaggaggagatcagcaggctgatgaaaaacggcagctacaatctggacccgtacatccaggagttcgggatcaaggtgaaggatgacatggtggaggtgacgggcagagtgctgccagcacccatcctgcagtacggaggcaggaaccgagccgtcgccacccccaaccagggcgtgtgggacatgcgggggaagcagttctacaatggcatcgagatcaaggtgtgggccatcgcctgcttcgctccgcagaaacagtgtcgcgaggaggtgctcaagggcttcactgaccagctgcgcaagatctccaaggacgcggggatgcctatccagggccagccctgcttctgtaaatacgcgcagggtgctgacagcgtggagcccatgttccgccacctgaaaaacacctattcagggctgcagctcatcatagtcatcctgcccgggaaaacgcccgtctacgcggaggtgaagcgtgtgggagacactctcctgggaatggccactcagtgtgttcaggtgaagaatgtggtgaagacctccccccagaccctctccaacctctgcctgaaaatcaacgccaagctggggggcattaacaacatcctggtcccgcaccagcgctctgcagtgttccagcagcctgtgatcttcctgggcgctgatgtcacgcacccccctgcaggcgacggcaagaagccctcgattactgcggtggtggggagcatggacgctcaccccagccgatactgtgccacggtgagagtacagcgcccccggcaggagatcatccaggacctggcctccatggtgcgggagctgctcatccagttctacaagtcgacccgctacaagcccaccaggatcatcttctacagagacggggtgccggaggggcagctcccacagatcctgcactatgagctgcttgctatcagagatgcctgcatcaagctggaggaggagtaccagcctggcatcacctacatcgtggtgcagaagcgccaccacacccggctcttctgtgccgaccggagcgagaggattgggaaaagtgggaatataccagcgggaacgacagtggacaccagcatcacacacccgtttgagtttgacttctacctgtgcagccatgcagggatacagggcaccagccgcccctctcactaccacgtgttgtgggatgacaactgcttcactgcggacgagctgcagctcctcacctaccagctgtgccacacgtacgtgcgctgcacccgctccgtctccatccccgcgcccgcttactacgcgaggctggtggcgttccgagcgcggtaccacctggtggacaaggaccacgacagtggggaaggcagccacatctcggggcagagtaacgtccgagacccccaggctctagccaaggcagtgcaggtgcaccaggacacgctgcggaccatgtacttcgcctgaacggagccccttccctcacacagagccccagaggcctgtccctgtccctccacagccagggggctgcctctgtacagacagcaaggatccagggagcgggatcgtcttccaagagaacaagcaaaaccttttcatcattcagctacttctgttgttttatatttccacacgagtctgtatgcaatattgaagaaaggagtccttgactgacacgcacgcacacacactgactgacacgcacgctcacacacacactgacacacacacacatgactgcgttctcttctccagtgagcttcgggaacattttaacgcagcgctttcctttagatgtagctgttaagtgttgttgttgatattttattgtagctctggtgtgaggcccaagagcgtgtagggtagaagtagcctccggagggtggagggaggaaagagggagggagaggaggggag
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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