2024-09-08 11:11:15, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_058647118 5771 bp mRNA linear VRT 08-AUG-2023 DEFINITION PREDICTED: Solea solea argonaute RISC catalytic component 3a (ago3a), transcript variant X2, mRNA. ACCESSION XM_058647118 VERSION XM_058647118.1 DBLINK BioProject: PRJNA1000511 KEYWORDS RefSeq. SOURCE Solea solea (common sole) ORGANISM Solea solea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081146) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_958295425.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5771 /organism="Solea solea" /mol_type="mRNA" /db_xref="taxon:90069" /chromosome="13" gene 1..5771 /gene="ago3a" /note="argonaute RISC catalytic component 3a; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins" /db_xref="GeneID:131470985" CDS 777..3359 /gene="ago3a" /codon_start=1 /product="protein argonaute-3 isoform X2" /protein_id="XP_058503101.1" /db_xref="GeneID:131470985" /translation="
MEIGTTGAVGAQSLFSMPRRPGYGTMGKPIKLLANCFQVEIPKMDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKKSLYTANPLPVAPTGVDLDVTLPGEGGKDRPFKVSIKFVSLVSWHMLHEVLTGRSMPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYEADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKEYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 993..1277 /gene="ago3a" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1305..1457 /gene="ago3a" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1458..1820 /gene="ago3a" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1614..1616,1659..1661,1701..1703,1713..1715, 1767..1769,1788..1790,1794..1796) /gene="ago3a" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1953..3230 /gene="ago3a" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2364..2366,2376..2378,2412..2423,2430..2432, 2454..2456,2463..2465,2475..2477,2487..2489) /gene="ago3a" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2568..2570,2574..2576,2784..2786,3198..3200) /gene="ago3a" /note="active site" /db_xref="CDD:240015" ORIGIN
tgtggctggagctcggactccgttcatctgtcaccggactgaaaacccggttctgctcggcggacgcggtttgtcagctttatttaccggctcaccgggacacggacacccgcacagacgccgtcggtgagactcggtgccgcgtcagctgctgtttttttcattatttttgtttaatttaatgacatttttttcaacgcggtaaaaaaaaaaaaaaaaaaaagtcgccgtcgtccgtctgaaactgtgcgagctaacggctaaagctaagcgctgtggctgcttcgacgctatacggagagcagacgcgggttgttgactgacgcgttcggtgtccggtgctcggtgttgagtcatgtgtccggacttgtttggactcggtgacctggctgtgatggtttcctgacacatcgtctccgctgctaacacctacttttcctccagcggggctagttagcaaacagcgagctaactcggctaactagctgcttccgactgacactcggcgtcagcagcggttttttctctctttttccttcgtggcattgaaatccggttggacacgttggccgtgtggtgattaacggcggaacgaaccaggcccgggggtctgttacccccgctctttcgcccactgttcggggggaggaagttacccgacagccggctcctgcagaggcggtactccgccgcaggagagcccgcactgaagcgagggagagtcggaaggtttgacagctgtgatccgggacgtgaaccgggcagagacctcatgaatggaaatcggaactacaggagccgttggggcccagtccctgttctccatgcctcggcggcctggctatggcaccatggggaagcccatcaagctgctggccaactgcttccaggtggagatccccaagatggatgtctacctctacgaggtggacataaagcctgacaagtgtccgcggcgagtcaacagggaagtggttgactcgatggtgcagcacttcaaggtgacgatcttcggggatcgcaggccggtctacgatgggaagaagagcctgtacacagccaacccactgcccgtggctcccacaggggtggacctggatgtcactctgccaggtgaaggagggaaagaccgtcccttcaaagtgtcaatcaaatttgtgtctctggtcagctggcacatgctgcacgaggtactgacgggccgcagcatgcctgagcccctggagctggacaaacccatcagcaccaacccggtccacgcggtggacgtggtcctgcgacacctgccctccatgaagtacactccggtgggtcgatccttcttctcggctccagagggctatgatcatcctctgggaggcgggagggaggtgtggtttggcttccatcagtctgtgcggcccgccatgtggaagatgatgctcaacattgacgtgtctgccaccgcgttctacaaggcccagcctgtcatccagttcatgtgtgaagtgctggacatccacaacatcgacgagcagccgcgtccactcacagactcacaccgggtcaaattcaccaaagagatcaaaggcttgaaggtggaggtgacgcactgtggaacaatgcggaggaagtaccgcgtctgcaacgtgacccgccgacctgccagccatcaaacgttccctttacagttggaaaacggtcagacagtggagcgaactgtcgcccagtacttcagggagaagtacagcctgcagctcaagtatccacatttgccctgtttacaagtgggtcaggagcagaagcacacctacctccccctggaggtgtgtaacattgtagcaggacagcgatgcatcaagaagctgacggataatcagacgtccaccatgatcaaagccacagctcgttctgcaccggacaggcaggaggagatcagcagactggtgcgtagtgccaactacgaggccgacccatttgtgcaggagttccagttcaaagtgcgcgacgagatggcccacgtgacggggcgagtgctacccgcccccatgctgcagtacggcggcaggaaccgcactgtggccacgcccagccacggcgtgtgggacatgagagggaagcagttccacaccggggtggagattaagatgtgggccatcgcctgcttcgccacacagaggcagtgtcgagaagaaatcctgaagggtttcaccgaccagctacgtaagatctccaaggacgctgggatgcccattcaaggtcagccatgtttctgtaaatacgcccagggagcggacagcgtggagcccatgttcagacacctgaagaacacctacgccgggctgcagctcatcattgtcatcctgccaggaaagactcccgtctacgcggaggtgaagcgtgtgggcgacactctccttggcatggccacccagtgtgttcaggtgaagaacgtggtgaagacgtcgcctcagactctgtccaacctctgcctcaagatcaacgtgaagctgggaggcatcaacaacatcctggtgcctcatcaacgaccttcagtgtttcagcagccagtgattttcttgggagcagacgtaacacatccgcctgctggagatggaaagaagccttcaatagctgcagtggtcggcagcatggacgcccaccccagcaggtactgtgcgactgtgcgggtccagaggcccaggcaggaggtcatccaggacctggcctccatggtgcgggagctgctcatacagttctacaaatccacgcgctacaagcccaccaggatcattttctacagggatggagtttcagaaggccagttcagacaggtgctgtattatgagctgctggccatccgcgaggcctgcatcagtctggagaaagagtatcagcctggcatcacctacattgttgtacaaaaacgtcaccacacacgtctcttctgtgccgaccgcaacgaaagagttggacgcagtggaaacattcctgctggtacgaccgtggatacggacatcacacatccgtacgagtttgacttttacctctgcagtcacgctggaatacagggcaccagtcgaccctctcactaccacgtcctgtgggacgacaactgtttcaccgctgacgagttccagctgctcacctaccagttgtgccacacctacgtgcgctgcacccgctcagtctccatccccgctccagcctactacgcccacctggtggccttccgcgctcgctaccacctggtggacaaagaacacgacagcgctgagggcagccacgtgtccggtcagagtaacggccgggacccgcaggcgctggccaaagctgttcagatccaccacgacaccctgaggaccatgtacttcgcctgagctccgcacacacacacacacacacacacttctctccctgtcattgcccaccctgttaacacacacacacacacagacgcaaccatgtacgccagtggaggagtcctcaccttgtcgcgccccgcctggcgcctggcccccgccacccccacccccaccagacgcctcgtcaatccggacctgacactgtgcagagggaaggagggagggaaggagggaaggagacacacccacattggactgaggacgcaaacgtcgctttaaaacagaaaaaaaaacacacaagagagaaactattatgcaaaatcaaaccagccaacgcgttgttttattctccgccctctcacagcgcctgctctggtctctggaggtgtatgttttcttttagtttacccctctttttttccactctttcactcgtctgctcctcggccgttcacacgtacctcaagtcagttttgagcagcagcacttttcacatttgtcgtggagcagagaagagtcggtctccgctggcgtctgttttccctctggattacaatttcacggttgccacttattattattcttattattattattattattgttgatattattattattattttcccctcgctgtatttcctctcatgtttcactcgtgtatgtgtgtgtgtgtgtgtgtggtcagcagttcgtgtgagcacactgccacctgttggctgacgaggtatgacgagctgtcgctgtgtccgtgtcagatcatttttctctcacctattttaaacgtgggtttagtttttaagtggctgatttctatatcaattgcttaaatgcagccatgtatgagttttatttaaagtataacactgttatttttccttcttctacattatggacattatattatttgtttgtttttaaaaaaaaatcatttaaacgtgtaatcctatgtttttaatctcggtaaatgtcatttcttactccagtgctttatctcacatttccctctgtggagtctgaggcggacgtgttttcctcgagtgcaataatcagttgaacgaggaggaaagaggacgtaaaaaaaaacaaccataaaaacagtttccacatttcatttgaagacattgtgacgtgttttcctcagagaggtgtcgatgatgagttttgccttttttgaggcaaagaaaaaacaaaaccggtgcgagtgcagtttatggtagttttcatgtttttacttgaattgaagaattttatcggcctcttttaccagaaaaatcaaagcttttcttcaccagagagcagcggaacgagtcaaagagaggtcgtagagaggtggtagagtttaagtgcctggtggaagtggaattgtttgacggtcagaagctgcacagccttatgacgacgaccctgtttgttttgttttttgtggctaaaagaaagtttcacctgaagcctctgaagtctctgatgcctctgatgtctctgaagtctctgatgcctctgaagcctgtgaagtctatgatgcctcgtttgcacgacacgattgtcagacatgtttccggcatggttcggtttggtgcagtacggtaaagtcctggatcaggctggtgttttggactgagaacagtacttttacccggtaggcgggggtgtgggtgtggtctgtgcccgatggtgacgtagcgtgacgtcgcacggcaacgaatgtgacaacagacgtccagcagctcttttttttttctgctcagtttgtggctgttgtgggcggagccagtcttgctccgccttgactgtaccgtaccattttaaggaatggaatgtttggttctttatttagcttttatggctgtagaattgtcagaaaatgttcagtgagtgagttcttctgctccttttttttttttattcaaccgttcactgagaagctaacgttgctaacgtgtgacgcaccggtgaatctcgtctgtgattggatgctcgttctgcgggaagtcctgaggttctaccgtaatgacaagtatattaacgcaaacgctctgctctctggtatctttccatccatcttctaccctggacagaacgccagtgcatagtttttgaatttactagacatcacaaacggtctataggagttacggtaatgagaagaacacgtgaccgatcctgtcttgtgacgacagaagagttgatttggttctattgctgaaggaaatgcaaagaaaactgtactggaccaaactgaaccgttccactgggtggaagcgcggctgtttatgttatgaacgttgtgaatcctcagtgcgagttgagcgatcgcccagaggaatacgacatctaaagatgatcaaagatcgggtttgatgaaacgattaaggctgcaaccgatactcaaccaagggtctactttgatcatcgactgatcgagtt
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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