2024-09-08 09:59:02, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_058633464 1920 bp mRNA linear VRT 08-AUG-2023 DEFINITION PREDICTED: Solea solea claudin-4-like (LOC131462346), mRNA. ACCESSION XM_058633464 VERSION XM_058633464.1 DBLINK BioProject: PRJNA1000511 KEYWORDS RefSeq. SOURCE Solea solea (common sole) ORGANISM Solea solea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081140) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_958295425.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1920 /organism="Solea solea" /mol_type="mRNA" /db_xref="taxon:90069" /chromosome="7" gene 1..1920 /gene="LOC131462346" /note="claudin-4-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 278 Proteins" /db_xref="GeneID:131462346" CDS 93..1238 /gene="LOC131462346" /codon_start=1 /product="claudin-4-like" /protein_id="XP_058489447.1" /db_xref="GeneID:131462346" /translation="
MVSLGRQMLGFALAVIGFLGTIIVCALPMWKVTAFIGANIVTAQVIWEGLWMNCVTQSTGQMQCKIYDSLLALPQDLQAARALVVIAIIVSAFGVIVGIAGGKCTNFVENQNAKAKVAIAAGIIFICAGVLILIPVCWSANTIIRDFYNPIMTNTHRETQRTMASMGMQMAGCALALLGWIGVIVVCGAPMWRVSAFIGNNIVTSQIIWEGIWMNCVVQSTGQMQCKVYDSMLALSADLQAARALTVVSIITGIVGLLIAFAGGKCTNFIAEERAKARASVAAGVVLIISGLLCLIPVCWTAGSIIRNFYSPLLIDAQKRELGASLYIGWGAGALLLLGGGLLCATCPPKEDHPPSVNYLLNKSTNKDTSFRSLTPTKTYI"
misc_feature 105..557 /gene="LOC131462346" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" misc_feature 588..1076 /gene="LOC131462346" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" polyA_site 1920 /gene="LOC131462346" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
atgtgccacagtctttattcagctttacaaaccacacttatctgacacactttacttgctccagaaacccttcactcttcagcagactcatcatggtgtcattgggacgacagatgctgggctttgccctggcagtcatcggcttcctggggacgatcatcgtgtgcgccctccccatgtggaaggtcacggcctttattggagccaacattgtgacagcgcaggtcatctgggaaggcttatggatgaactgtgtcacgcagagcacgggccagatgcagtgcaagatctacgactctctcctggctctacctcaggacctccaggccgccagggctctcgtggtcatcgccattatcgtctcggccttcggcgtcatcgtgggcattgccggtggcaagtgcaccaactttgtggagaaccagaacgccaaagccaaggtggccatcgccgcagggattatctttatttgcgctggtgttctcatcctcatccctgtgtgctggtctgccaacaccatcatcagggatttctacaacccaatcatgaccaacacgcacagagagactcagaggacaatggcttccatgggcatgcagatggccggctgtgctctggcccttttgggctggattggggtgatcgtcgtctgtggcgcgcccatgtggagggtctccgctttcatcggcaacaacatagtgacatcacagatcatatgggagggcatctggatgaactgcgtggttcagagcacaggccagatgcagtgtaaggtgtacgactccatgttggctctgagcgcagacctgcaggcggctcgagccctcactgtggtttccatcatcacgggcatcgtggggctcctcatcgctttcgctggtgggaagtgcaccaacttcatcgcagaggagagggccaaggcgagggcctcagtggcggccggcgtggtgctgatcatcagtgggctcctctgcctcatcccagtttgctggactgccggctccatcatcaggaacttttacagccctctgcttatagacgcacagaagagggagctcggggcctcgctgtacatcggctggggagccggggccctgctgctcctgggaggggggctcctgtgtgccacctgtccccccaaagaagaccatcccccatctgtgaactacctcctcaacaagtcaaccaataaagacacttcgttccgatccttgacaccaacaaagacatacatttgaagatgagcatctgtgcttgtactcaagaaacttggagtttaatgaaggattttttttaagcttttcattagctgctgaaaagcctgaagaaaaaggacaattcatgatgaaggaatgtgcgtttgaatttaagagactttaaagctgaacatgacccttggtaatgaacgtccactgtgcatacaggtatcgtttaaagtgtgtttaaactgtgtttgaaatgtttgggaaattataaaactttgtgaggttttttttcttttgaatttgtgtctgtatttttcacattaaataactttctttgttagttagtttccactgtgtttctgtcttcatgatgatacttattctgattatgtggttattaaaagcaaaccgagagtagtatgagaacccgtttggcaggtatttacccgagatcaccgcacaggaaacaaacagtgagtcacagacttacatgcctactgttggctgaggtgtttagttagtaaagctttatatacttttaaatgttttcatttgtttttgaaagaaactataacctgacactcctgatgtgagaccactgacctcatgggagtgctatgttatcagcttctatatcaaagataaaaaagggagtcaaataactcaggcgtcacagaatgagtcagaagagctgacgatgtttaaaaaaagaaac
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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