2024-09-08 11:08:45, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_058618365 7995 bp mRNA linear VRT 08-AUG-2023 DEFINITION PREDICTED: Solea solea argonaute RISC catalytic component 3b (ago3b), transcript variant X3, mRNA. ACCESSION XM_058618365 VERSION XM_058618365.1 DBLINK BioProject: PRJNA1000511 KEYWORDS RefSeq. SOURCE Solea solea (common sole) ORGANISM Solea solea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081153) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_958295425.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7995 /organism="Solea solea" /mol_type="mRNA" /db_xref="taxon:90069" /chromosome="20" gene 1..7995 /gene="ago3b" /note="argonaute RISC catalytic component 3b; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:131446955" CDS 120..2753 /gene="ago3b" /codon_start=1 /product="protein argonaute-3 isoform X3" /protein_id="XP_058474348.1" /db_xref="GeneID:131446955" /translation="
MEIGTTGAVGAQAVGAQAVGAQDLFALPRRPGYGTVGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDTMVQHFKVTIFGDRLPVYDGKRSLYTASPLPVATSGVDLDVTLPGEGGKDRPFKVTIRFVSLVSWHLLHEVLTGRAMAEPVDLEKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSSPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPATLQTFPLQLENGQTVERTVAQYFREKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNVVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYEADPFVQEFQFRVRDEMAQVLGRVLPAPMLQYGGRVSSEPFMNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKSFTEQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKDTYAGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFSADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 366..650 /gene="ago3b" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 678..830 /gene="ago3b" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 831..1193 /gene="ago3b" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(987..989,1032..1034,1074..1076,1086..1088, 1140..1142,1161..1163,1167..1169) /gene="ago3b" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1326..2624 /gene="ago3b" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1758..1760,1770..1772,1806..1817,1824..1826, 1848..1850,1857..1859,1869..1871,1881..1883) /gene="ago3b" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1962..1964,1968..1970,2178..2180,2592..2594) /gene="ago3b" /note="active site" /db_xref="CDD:240015" ORIGIN
tcaccggagcaggggaaaccgggggagagcggcgcgtcggcccagggggagttttactccacgcagaggcagagagagcgatcactgggtgccgggttttccggacagagacctcatgaatggaaatcggaacaacaggagccgttggagcccaagccgttggagcccaagctgttggagcccaagacctctttgcgttgccacgacgaccgggctatggcactgttgggaagcccatcaagcttctggccaactgcttccaagtggaaatccccaaaattgacgtctacctgtatgaagtggatattaaacctgacaaatgtcctcgcagagtcaacagggaggtggtggacaccatggttcagcatttcaaggtgaccatctttggtgaccgcctgccggtttacgatgggaaaaggagtctctacaccgcgagcccacttcctgtcgccaccagtggtgtggatctggatgtcaccctgccaggtgaaggagggaaggaccgcccgtttaaagtcaccatcaggtttgtgtcgttggtcagctggcacttgctgcacgaggtcttgactggacgtgctatggctgaacctgtggacctggagaaacccatcagcactaatcctgttcacgctgtggacgtcgtccttcgacacctcccctccatgaagtacacccccgttggacggtctttcttctcctccccagaaggctatgaccacccactgggtggggggcgagaggtttggtttggtttccatcagtcagtacggccggccatgtggaaaatgatgctcaacattgatgtgtcagccacagccttttacaaagctcagccggtcattcagttcatgtgtgaggtcctggacattcacaacattgacgagcagccccgcccactcaccgactcccacagggtcaagtttaccaaagagatcaaaggtctcaaagtggaagtgacacactgtggaaccatgcgtaggaagtacagagtgtgcaacgtgacacgacgccctgcgaccctccagacgtttcctttgcagcttgagaacggtcagacagtggaacgcacagtggcgcagtatttcagagagaagtacagtctgcagctgaaatatccccacctgccttgtctgcaggtgggccaggagcagaaacatacctacctgccactggaggtttgcaacgttgtagctggtcagcgctgcattaaaaaactaaccgataaccagacatcgactatgataaaagcaactgctcgttcagcaccagacaggcaggaggagatcagcaggctggtgcggagcgcaaattatgaggccgacccattcgtccaagagtttcagttccgcgtccgggacgagatggctcaggtgttgggccgcgtactgccggcccccatgctgcagtatggcggcagggtgagctctgaaccatttatgaaccgcacggtggccacacccagccacggggtgtgggacatgagggggaagcagtttcacaccggagtggaaatcaagatgtgggccatcgcctgctttgccacccagaggcagtgcagagaggagatcctcaagagcttcactgaacagctgcggaaaatctcaaaggatgctgggatgccaatccaaggccagccgtgcttctgcaaatacgcccagggagctgacagcgtggagcccatgttcagacacctgaaggacacctacgccgggctgcagctcattatcgtcatactgccagggaaaacacccgtctacgctgaagtgaaacgcgtcggggacaccctcctcggcatggccacgcagtgtgtccaggtgaagaacgtcgtgaaaacgtctccacagacgctctccaacctctgcctcaagatcaacgtcaaactgggaggaatcaacaacatcctggttccacaccagcggccgtctgtgttccagcagcctgtcatcttcctcggcgcggacgtcactcatcctcctgccggtgatgggaaaaaaccatctattgcagcggtggtgggcagcatggacgcccaccccagcaggtactgcgctacagtgcgagtccagaggcccaggcaggaggtcattcaagacttggcgtctatggtgcgagagcttctgatccagttctacaaatcaacgcgttacaaaccgaccaggatcatcttctacagggatggagtgtccgagggccagttcagacaggtgctgtactatgaactgctggccatcagggaggcttgcatcagtctggagaaagattaccagccggggattacgtacatcgtcgtacagaaacgccatcacacgcgcctcttctgtgctgatcgcaacgagagggttggacgaagtggaaacattcctgccggcaccacagtggacacagacatcactcacccatatgagtttgacttttacctctgcagtcacgctgggatccagggtacgagtcgtccttctcactaccacgttttgtgggacgacaactgcttctccgctgatgagttccagctcctcacctaccagctgtgccacacctacgtccgctgcactcggtccgtttccatcccagcgccggcatactacgcacacctggtggccttccgtgcgcgataccacctggtggacaaagaacacgacagtgcggagggcagccacgtgtcggggcagagtaacggcagagaccctcaggctttggccaaagctgttcagatccaccacgacacgttgaggaccatgtactttgcctgaacctccttccacatcgcctcctcttgtctcagcctctcatccagtcttaaggtttgactccacgctagggcgcctctggtgtgaggtgatggctactgcaggccgcgcgaggaatcacagccacgttatgcaacatgaaaaccagccaatcgttcctgccactgcgtcacttactcctctccacatcatctccattctgaatctccttatagcctccaggtttgacgacacaaactcaaaactacgttgttgcagggattatcgtaatgtgcgtatggattacggcatagccggtgggaaaatatgaaaaaaaactgacgattctttggtgcgtggttgtgaacgaagcagaaccggagaaaagtcctgacttcttcacattgagcctaacgttgctggtttatactgtattttattttattttatttttcagctttctagatactgtatgtgtttgtgtgtcgagcagatgtgcggtcgccatagcaacatgtgagcggagtgcgacccccccccccttttttttccctttataacaacagtcattcttgtgtctccctcattaatccagtggtttaacagtcgtggaatcgagtcacgactcttctctctcccgacaaagacactgaatgaaatctttaaccttttttttgttttgtttttttctaaaggaaaagccacgtatattctgtcctttttaaaggctttgtttgtgcatcaattgtttgcaagtcgaattcctctaaagagaactgtgttcaattttaaacttttctaactcaaatttcagtttggtgcagcgtcttataccaaatttattcttgtatgttttattactctcatttatttatgagtgtgtttctatttaaacttttaaattaaacacgtatgcagcaataaaaacgaaagacggactgtttttaatcttcaaatctatcacaccacaaacgtcggcttcttcttcttaaaaacacgagttgatgagagctccttcagcgcgatgtgagattcaaacgtagaagaagcagagggtgtttgtcgagtgtttgtgtgccacagtggtttgttgtgagtgagtttttggacgtgacgatgagcgaggattcaggaatgtgttgtttgtgaccgtgatgctggatcagtaaggatcagtgaggaggtgcttggagaaaagtgatgatcaaagtgcctgatgtcgttgaaactgaggttgttggtttcgcatgttggtttgagtgttgatgcagaagtgcgcagatactgcactgtgttgaagatggcgctgcaactaacagttattttcataatcgatttaatatgtccgtcattttctgatgaatcgaggaagtatttggcccacaaaccgaaattaattcagttttaatggtttcttcattaaaaggaagcaaagacacctggatatagtcacatttaggcagctgaaaatgtgttaataaactagttggcgattcatttagttatagattagtcattgattaggaagatttttttcataatttggtgatgaaatctttcgatttcatcatgttttgatgcagattctgcacatacatcatttatgaattatacacttattttcttttatcaacaataattcaaaaacaatttgatctcttaaggtttcatcatcatctgagtttttcctgtttgcacttttaacaaaatttaatcaaattggatgttttttttagtttcggtgagttttttaactgtttctcagacgtctgaagacgtcaaatcaggctttttggcttcagactatgaaaaaaatgattagttgcagctctgctcggtttgttttataagtgtttcggctccactgatggaaatctaacattttcttgagtataaatctctcttttggcatgaaatcatgtcaatatgtaataagttaatatacattcaattattataattttttttttcataatgagaatttgatcgttgttgccagagttttggaaacggtacatgtgtttgttttaacaaaaacaaaaaagagttattgatatttttcagtgcttggaccaaaccaatgtgcctggtggttgggggggcagggggtcggtgtaggactcaagaaggtgtcgatacttgtacggcgtcgttcttaaaaatgctgcgtcaccacaaccaaactgtagctgctatatttaatatcagtaggttttaaataaaatgctttaggagaaataggaacttatggtattttacatcacttaaaattagctgggtgtgtttgtggttgagtccagttttgaagtctaaatgtttttaattcttcgattgtcagagacgattgtctccgctgcgtttgtttgtcgttgtgttagaagccgtttcccgaggtcagacattaccagcatttaattttacttgaatagttttagtagtttttgtgggcatgtttaacatagtgctctgcttgtttttcaaagtttataatatacagtatatatagatgtaattatgtatacacagagccttattgcagaacccccctgttttcctgtcatgatgccacttcaagcaaattgacttttaaggccttgacgagctgattgatgccttttcccccctttaggaaaataaaagccttttttaaaaactgtaaaaggagatatatttatatttacagatactaatcgtacacagtaaaccacttatttttcctatttgaagcagaacagctgtgttgaaataatggtcacttttcccaaatgtgacgatgcaaatctcatgctttgagaagaaatgtgttttttttgttgttttttttcgttgatctgctatttctgagattgtcggagaagacgttgccgttgttttgtcgaagtgccgaccctcctccgtcgtgacaaacggctcgataccactctttcacgtccgatataccgatatcacaaccttttacgactgtcggacgtaattctccaactgtgtaacaaatataagcagcttaaaacatgactaggctaaaatgctgtcgctgattttgatctttctgatatctgatccagtgatttatcattttctttccagtatcggaccgataccaagtattgctaacgagttcttgaatttctaccgataaatcgatattatgtcatgatgcaaacttttacctcatgacttttaaacaactttgcttaataataagtttgtgtcgtttcagaaacgcagtgtctaacggtgtggcaggcgtttgtcgtcacggtcacatgacgccatgtctctttccagcatgttgtgtcagatttgaccgatatctcatacatgatatctactgtgctcagctttatttcagtgatgagctgatgcaatacttgttatcactggattggatattaaaatgtgattttaaatgcttcactcgacaaaggcaacatcgttttgtttttaaaatcagaaggttatagcgggtaggcgtgagagaacatacagatatactaaaatattgcaatatttcatggcatcagtttttaaagtgctgtatatcacaaatattctcgatagtgttttttttttggttgcatttaagcctccggccactagttagcagcaggctttcagccatttgactccctcccccctcctttaactcttcacctgtccatataatgttattaatttcactatgagaactttaattaaaatagtcaatctttggtgtgaaaaaatccgaactgtaacaacttgtaaacctagtatagtgatatacatcgtatcggaataaatccatcagtacaaacttcttaagagggaaaagactggtgtcgatatcggtaacatctggtgtgaggaaaatcttgatatacaaaactattgtgatatttcatggtatgatactgtattaattctttaaagcacttgatagcggtttaagcctctgacctctagttggcagtaggacttcggccatttgatctcaaactaggtaaaaagaaaacaacctttaacatttacatcgtaacgggacatgtatcgtatcgctagtggcttggagataaatgtgtcacatgaaaactgtcgactggtgtcgatatcggtagatcatagtatcagtaatatcgggcgtgagaaaatattgatatgcaaaaatactgcgatatttcgtggcatgatactgtaagcctccgaccactaggcccaaattggcatcgcaagtgcacaagtgtgtgcgcagaaatattgtagcttttaagttgagaccttgccagatttttgtcgcaaaagtggtaaaagtctgatgtcgttatcggtttgtcgtaaaatctgactcagtaaaagtggctttgactaaattctatcatctgaaaagctcactggaggcattaaggactcgatctcgtcacacgtacgaactgcgagaatcaattttaacgttgaaaataaaagcggaggagggtctggggatcctcggactccataaaaacttgctgtgcctttttctcgtggtgctacaagaaagaaaatcaaagactgtaatgcaaaaaaacacaagtatataatattaatattaataatacatggcgatactgtaaagagcgagtgagtgtgtgtgtgtgtgtgtgattctgacaccaagaacaggaaaattatgtagaactgatgggtttggagtgaacaggaccaaaagttctgtggtatcagttttgaaaaggacaaacacaaagacagggaacacgactcgccactccgtacgtaaacaagtagctcagcgtagactttatgtagcataatttatttaactaatatttctatcgggactttgactcccctttctttgttttttctttctttctcactgcctttgaaacatttatctgctttatcactcgtgtgtgagtgagtgtttgttcttaaatcgacggcagtaacgtcgtaagtttccgtgcgaacggtttattcttccctctccgtgtgtttgcatgtcgcttttatttctttttaatgtgaaatctaaacgtttacaaacatcttccttgtctccatatttaacttacgtcccccacaaaaataaaacacttgtgtgttttggctgcatatcatcaaactcaaaactatctatttttgcctgattatgaatttgtgtcacttttagaattttttttttttttgtcttaacactcatgtgatcctggtcctacattgagcctttttatttggttgttattatatttaattgtttgttttttttggaataaatacacttctgtat
//
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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