2024-09-08 11:18:59, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_058618363 8007 bp mRNA linear VRT 08-AUG-2023 DEFINITION PREDICTED: Solea solea argonaute RISC catalytic component 3b (ago3b), transcript variant X2, mRNA. ACCESSION XM_058618363 VERSION XM_058618363.1 DBLINK BioProject: PRJNA1000511 KEYWORDS RefSeq. SOURCE Solea solea (common sole) ORGANISM Solea solea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081153) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_958295425.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8007 /organism="Solea solea" /mol_type="mRNA" /db_xref="taxon:90069" /chromosome="20" gene 1..8007 /gene="ago3b" /note="argonaute RISC catalytic component 3b; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:131446955" CDS 120..2765 /gene="ago3b" /codon_start=1 /product="protein argonaute-3 isoform X2" /protein_id="XP_058474346.1" /db_xref="GeneID:131446955" /translation="
MEIGTTGAVGAQAVGAQAVGAQDLFALPRRPGYGTVGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDTMVQHFKVTIFGDRLPVYDGKRSLYTASPLPVATSGVDLDVTLPGEGGKDRPFKVTIRFVSLVSWHLLHEVLTGRAMAEPVDLEKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSSPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPATLQTFPLQLENGQTVERTVAQYFREKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNVVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYEADPFVQEFQFRVRDEMAQVLGRVLPAPMLQYGGRPQQINPALSFQNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKSFTEQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKDTYAGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFSADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 366..650 /gene="ago3b" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 678..830 /gene="ago3b" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 831..1193 /gene="ago3b" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(987..989,1032..1034,1074..1076,1086..1088, 1140..1142,1161..1163,1167..1169) /gene="ago3b" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1326..2636 /gene="ago3b" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1770..1772,1782..1784,1818..1829,1836..1838, 1860..1862,1869..1871,1881..1883,1893..1895) /gene="ago3b" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1974..1976,1980..1982,2190..2192,2604..2606) /gene="ago3b" /note="active site" /db_xref="CDD:240015" ORIGIN
tcaccggagcaggggaaaccgggggagagcggcgcgtcggcccagggggagttttactccacgcagaggcagagagagcgatcactgggtgccgggttttccggacagagacctcatgaatggaaatcggaacaacaggagccgttggagcccaagccgttggagcccaagctgttggagcccaagacctctttgcgttgccacgacgaccgggctatggcactgttgggaagcccatcaagcttctggccaactgcttccaagtggaaatccccaaaattgacgtctacctgtatgaagtggatattaaacctgacaaatgtcctcgcagagtcaacagggaggtggtggacaccatggttcagcatttcaaggtgaccatctttggtgaccgcctgccggtttacgatgggaaaaggagtctctacaccgcgagcccacttcctgtcgccaccagtggtgtggatctggatgtcaccctgccaggtgaaggagggaaggaccgcccgtttaaagtcaccatcaggtttgtgtcgttggtcagctggcacttgctgcacgaggtcttgactggacgtgctatggctgaacctgtggacctggagaaacccatcagcactaatcctgttcacgctgtggacgtcgtccttcgacacctcccctccatgaagtacacccccgttggacggtctttcttctcctccccagaaggctatgaccacccactgggtggggggcgagaggtttggtttggtttccatcagtcagtacggccggccatgtggaaaatgatgctcaacattgatgtgtcagccacagccttttacaaagctcagccggtcattcagttcatgtgtgaggtcctggacattcacaacattgacgagcagccccgcccactcaccgactcccacagggtcaagtttaccaaagagatcaaaggtctcaaagtggaagtgacacactgtggaaccatgcgtaggaagtacagagtgtgcaacgtgacacgacgccctgcgaccctccagacgtttcctttgcagcttgagaacggtcagacagtggaacgcacagtggcgcagtatttcagagagaagtacagtctgcagctgaaatatccccacctgccttgtctgcaggtgggccaggagcagaaacatacctacctgccactggaggtttgcaacgttgtagctggtcagcgctgcattaaaaaactaaccgataaccagacatcgactatgataaaagcaactgctcgttcagcaccagacaggcaggaggagatcagcaggctggtgcggagcgcaaattatgaggccgacccattcgtccaagagtttcagttccgcgtccgggacgagatggctcaggtgttgggccgcgtactgccggcccccatgctgcagtatggcggcaggccccagcagataaaccctgcactgtcgttccagaaccgcacggtggccacacccagccacggggtgtgggacatgagggggaagcagtttcacaccggagtggaaatcaagatgtgggccatcgcctgctttgccacccagaggcagtgcagagaggagatcctcaagagcttcactgaacagctgcggaaaatctcaaaggatgctgggatgccaatccaaggccagccgtgcttctgcaaatacgcccagggagctgacagcgtggagcccatgttcagacacctgaaggacacctacgccgggctgcagctcattatcgtcatactgccagggaaaacacccgtctacgctgaagtgaaacgcgtcggggacaccctcctcggcatggccacgcagtgtgtccaggtgaagaacgtcgtgaaaacgtctccacagacgctctccaacctctgcctcaagatcaacgtcaaactgggaggaatcaacaacatcctggttccacaccagcggccgtctgtgttccagcagcctgtcatcttcctcggcgcggacgtcactcatcctcctgccggtgatgggaaaaaaccatctattgcagcggtggtgggcagcatggacgcccaccccagcaggtactgcgctacagtgcgagtccagaggcccaggcaggaggtcattcaagacttggcgtctatggtgcgagagcttctgatccagttctacaaatcaacgcgttacaaaccgaccaggatcatcttctacagggatggagtgtccgagggccagttcagacaggtgctgtactatgaactgctggccatcagggaggcttgcatcagtctggagaaagattaccagccggggattacgtacatcgtcgtacagaaacgccatcacacgcgcctcttctgtgctgatcgcaacgagagggttggacgaagtggaaacattcctgccggcaccacagtggacacagacatcactcacccatatgagtttgacttttacctctgcagtcacgctgggatccagggtacgagtcgtccttctcactaccacgttttgtgggacgacaactgcttctccgctgatgagttccagctcctcacctaccagctgtgccacacctacgtccgctgcactcggtccgtttccatcccagcgccggcatactacgcacacctggtggccttccgtgcgcgataccacctggtggacaaagaacacgacagtgcggagggcagccacgtgtcggggcagagtaacggcagagaccctcaggctttggccaaagctgttcagatccaccacgacacgttgaggaccatgtactttgcctgaacctccttccacatcgcctcctcttgtctcagcctctcatccagtcttaaggtttgactccacgctagggcgcctctggtgtgaggtgatggctactgcaggccgcgcgaggaatcacagccacgttatgcaacatgaaaaccagccaatcgttcctgccactgcgtcacttactcctctccacatcatctccattctgaatctccttatagcctccaggtttgacgacacaaactcaaaactacgttgttgcagggattatcgtaatgtgcgtatggattacggcatagccggtgggaaaatatgaaaaaaaactgacgattctttggtgcgtggttgtgaacgaagcagaaccggagaaaagtcctgacttcttcacattgagcctaacgttgctggtttatactgtattttattttattttatttttcagctttctagatactgtatgtgtttgtgtgtcgagcagatgtgcggtcgccatagcaacatgtgagcggagtgcgacccccccccccttttttttccctttataacaacagtcattcttgtgtctccctcattaatccagtggtttaacagtcgtggaatcgagtcacgactcttctctctcccgacaaagacactgaatgaaatctttaaccttttttttgttttgtttttttctaaaggaaaagccacgtatattctgtcctttttaaaggctttgtttgtgcatcaattgtttgcaagtcgaattcctctaaagagaactgtgttcaattttaaacttttctaactcaaatttcagtttggtgcagcgtcttataccaaatttattcttgtatgttttattactctcatttatttatgagtgtgtttctatttaaacttttaaattaaacacgtatgcagcaataaaaacgaaagacggactgtttttaatcttcaaatctatcacaccacaaacgtcggcttcttcttcttaaaaacacgagttgatgagagctccttcagcgcgatgtgagattcaaacgtagaagaagcagagggtgtttgtcgagtgtttgtgtgccacagtggtttgttgtgagtgagtttttggacgtgacgatgagcgaggattcaggaatgtgttgtttgtgaccgtgatgctggatcagtaaggatcagtgaggaggtgcttggagaaaagtgatgatcaaagtgcctgatgtcgttgaaactgaggttgttggtttcgcatgttggtttgagtgttgatgcagaagtgcgcagatactgcactgtgttgaagatggcgctgcaactaacagttattttcataatcgatttaatatgtccgtcattttctgatgaatcgaggaagtatttggcccacaaaccgaaattaattcagttttaatggtttcttcattaaaaggaagcaaagacacctggatatagtcacatttaggcagctgaaaatgtgttaataaactagttggcgattcatttagttatagattagtcattgattaggaagatttttttcataatttggtgatgaaatctttcgatttcatcatgttttgatgcagattctgcacatacatcatttatgaattatacacttattttcttttatcaacaataattcaaaaacaatttgatctcttaaggtttcatcatcatctgagtttttcctgtttgcacttttaacaaaatttaatcaaattggatgttttttttagtttcggtgagttttttaactgtttctcagacgtctgaagacgtcaaatcaggctttttggcttcagactatgaaaaaaatgattagttgcagctctgctcggtttgttttataagtgtttcggctccactgatggaaatctaacattttcttgagtataaatctctcttttggcatgaaatcatgtcaatatgtaataagttaatatacattcaattattataattttttttttcataatgagaatttgatcgttgttgccagagttttggaaacggtacatgtgtttgttttaacaaaaacaaaaaagagttattgatatttttcagtgcttggaccaaaccaatgtgcctggtggttgggggggcagggggtcggtgtaggactcaagaaggtgtcgatacttgtacggcgtcgttcttaaaaatgctgcgtcaccacaaccaaactgtagctgctatatttaatatcagtaggttttaaataaaatgctttaggagaaataggaacttatggtattttacatcacttaaaattagctgggtgtgtttgtggttgagtccagttttgaagtctaaatgtttttaattcttcgattgtcagagacgattgtctccgctgcgtttgtttgtcgttgtgttagaagccgtttcccgaggtcagacattaccagcatttaattttacttgaatagttttagtagtttttgtgggcatgtttaacatagtgctctgcttgtttttcaaagtttataatatacagtatatatagatgtaattatgtatacacagagccttattgcagaacccccctgttttcctgtcatgatgccacttcaagcaaattgacttttaaggccttgacgagctgattgatgccttttcccccctttaggaaaataaaagccttttttaaaaactgtaaaaggagatatatttatatttacagatactaatcgtacacagtaaaccacttatttttcctatttgaagcagaacagctgtgttgaaataatggtcacttttcccaaatgtgacgatgcaaatctcatgctttgagaagaaatgtgttttttttgttgttttttttcgttgatctgctatttctgagattgtcggagaagacgttgccgttgttttgtcgaagtgccgaccctcctccgtcgtgacaaacggctcgataccactctttcacgtccgatataccgatatcacaaccttttacgactgtcggacgtaattctccaactgtgtaacaaatataagcagcttaaaacatgactaggctaaaatgctgtcgctgattttgatctttctgatatctgatccagtgatttatcattttctttccagtatcggaccgataccaagtattgctaacgagttcttgaatttctaccgataaatcgatattatgtcatgatgcaaacttttacctcatgacttttaaacaactttgcttaataataagtttgtgtcgtttcagaaacgcagtgtctaacggtgtggcaggcgtttgtcgtcacggtcacatgacgccatgtctctttccagcatgttgtgtcagatttgaccgatatctcatacatgatatctactgtgctcagctttatttcagtgatgagctgatgcaatacttgttatcactggattggatattaaaatgtgattttaaatgcttcactcgacaaaggcaacatcgttttgtttttaaaatcagaaggttatagcgggtaggcgtgagagaacatacagatatactaaaatattgcaatatttcatggcatcagtttttaaagtgctgtatatcacaaatattctcgatagtgttttttttttggttgcatttaagcctccggccactagttagcagcaggctttcagccatttgactccctcccccctcctttaactcttcacctgtccatataatgttattaatttcactatgagaactttaattaaaatagtcaatctttggtgtgaaaaaatccgaactgtaacaacttgtaaacctagtatagtgatatacatcgtatcggaataaatccatcagtacaaacttcttaagagggaaaagactggtgtcgatatcggtaacatctggtgtgaggaaaatcttgatatacaaaactattgtgatatttcatggtatgatactgtattaattctttaaagcacttgatagcggtttaagcctctgacctctagttggcagtaggacttcggccatttgatctcaaactaggtaaaaagaaaacaacctttaacatttacatcgtaacgggacatgtatcgtatcgctagtggcttggagataaatgtgtcacatgaaaactgtcgactggtgtcgatatcggtagatcatagtatcagtaatatcgggcgtgagaaaatattgatatgcaaaaatactgcgatatttcgtggcatgatactgtaagcctccgaccactaggcccaaattggcatcgcaagtgcacaagtgtgtgcgcagaaatattgtagcttttaagttgagaccttgccagatttttgtcgcaaaagtggtaaaagtctgatgtcgttatcggtttgtcgtaaaatctgactcagtaaaagtggctttgactaaattctatcatctgaaaagctcactggaggcattaaggactcgatctcgtcacacgtacgaactgcgagaatcaattttaacgttgaaaataaaagcggaggagggtctggggatcctcggactccataaaaacttgctgtgcctttttctcgtggtgctacaagaaagaaaatcaaagactgtaatgcaaaaaaacacaagtatataatattaatattaataatacatggcgatactgtaaagagcgagtgagtgtgtgtgtgtgtgtgtgattctgacaccaagaacaggaaaattatgtagaactgatgggtttggagtgaacaggaccaaaagttctgtggtatcagttttgaaaaggacaaacacaaagacagggaacacgactcgccactccgtacgtaaacaagtagctcagcgtagactttatgtagcataatttatttaactaatatttctatcgggactttgactcccctttctttgttttttctttctttctcactgcctttgaaacatttatctgctttatcactcgtgtgtgagtgagtgtttgttcttaaatcgacggcagtaacgtcgtaagtttccgtgcgaacggtttattcttccctctccgtgtgtttgcatgtcgcttttatttctttttaatgtgaaatctaaacgtttacaaacatcttccttgtctccatatttaacttacgtcccccacaaaaataaaacacttgtgtgttttggctgcatatcatcaaactcaaaactatctatttttgcctgattatgaatttgtgtcacttttagaattttttttttttttgtcttaacactcatgtgatcctggtcctacattgagcctttttatttggttgttattatatttaattgtttgttttttttggaataaatacacttctgtat
//
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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