2024-09-08 11:16:36, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_058553673 6000 bp mRNA linear MAM 31-JUL-2023 DEFINITION PREDICTED: Diceros bicornis minor argonaute RISC catalytic component 3 (AGO3), transcript variant X6, mRNA. ACCESSION XM_058553673 VERSION XM_058553673.1 DBLINK BioProject: PRJNA998007 KEYWORDS RefSeq. SOURCE Diceros bicornis minor ORGANISM Diceros bicornis minor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Rhinocerotidae; Diceros. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_080752) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_020826845.1-RS_2023_07 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 07/26/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6000 /organism="Diceros bicornis minor" /mol_type="mRNA" /isolate="mBicDic1" /sub_species="minor" /db_xref="taxon:77932" /chromosome="13" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /geo_loc_name="USA" /lat_lon="32.1795 N 97.7972 W" /collected_by="Budhan Pukazhenthi" gene 1..6000 /gene="AGO3" /note="argonaute RISC catalytic component 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:131413135" CDS 91..1971 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X5" /protein_id="XP_058409656.1" /db_xref="GeneID:131413135" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 91..432 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(226..228,271..273,313..315,325..327,379..381, 400..402,406..408) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 565..1842 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(976..978,988..990,1024..1035,1042..1044,1066..1068, 1075..1077,1087..1089,1099..1101) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1180..1182,1186..1188,1396..1398,1810..1812) /gene="AGO3" /note="active site" /db_xref="CDD:240015" polyA_site 6000 /gene="AGO3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
aaattgtggaggtgtttataaagtttatttggatggaagtttagcatttctgccactgccttctacaaagcacaacctgtaattcaattcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggcacaatgaggcggaaatatcgtgtttgtaacgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagttgcgcagtatttcagagaaaagtatactcttcagctgaagtacccacaccttccctgtctgcaagtggggcaggagcagaaacatacctatctgccgctagaagtctgtaatattgtggcagggcaacgatgtatcaagaagttaacggacaatcagacttctactatgatcaaagcaacagcaagatctgcgccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggaatttcaatttaaagttcgagatgaaatggcccatgtaaccggacgagtacttccagcacctatgctccaatatggaggacggaatcggacagtagcaacaccaagccacggagtatgggacatgcgagggaaacaattccacacaggagttgaaatcaaaatgtgggctatagcttgttttgccacacagaggcagtgcagagaagaaatattaaagggtttcacggaccaactgcgtaagatttctaaagatgcaggaatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactctggcctccagctcattatcgtcatcttgccggggaagacaccggtatatgcggaggtgaaacgtgtaggagatacgcttttgggtatggctacacagtgtgttcaagtcaagaatgtaataaaaacatcccctcaaactctctcaaacctgtgcctaaagataaatgttaaacttggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgcgctacagtaagagttcagagaccccgacaggagatcatccaggacttagcctccatggtccgagaacttctcattcagttttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttaggcaggtattatattatgagctactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctatattgtagttcagaagagacatcacacgcgattattttgtgctgataggacagaaagggtcggaagaagtggcaacatcccagctggaacaacagttgatacagacattacacacccatatgagttcgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttgtgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttatgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtggcatttagagccagatatcatctcgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaatgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaaggccaagaatattctctgagaggaagaactgaaagatgaatcgacatacaacgtatgtttccagtggagtaattgagtggggatgcctccagctatacagaaaccaacactgtgtgggggccagggtctgatctttatgttgatacaaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttttgtgcggtctcctgtaggaagtatcgcagttgttttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaattatctttgcaaaaaaagtaaagaaaaagaaaatgatggtttaaaaaaatacacctacatgaataatcaaagtgattgttcacaattatgtgtgcaaaaaaaatgtgcattcatctattcttgtaaaaggtatctgtgtatattttaaatatatacatgcatacttcatatgcatatatatctggatctacattgataatagatatatatgtgtctctgtatatattttatagttcattccattggggaactttccttccctcttattatccccacaccaccacttttatttctctctctacctcccttgccttcatcacctacattttttttcctaatgctaccagtgacattcaaatgttcatgtatctggttcatttgaatatgaagcatgacaaactagattttaatttttattttgcacaccctactcctgtgtcttgtctcatacacaattctgaatcctcaactcttgatagtgctttcttaagaaacagaattattttatatatacatttgtttttgtgagagtatgtgtctgccccctcctgctctgaacttacatttgccatttgtgcaatgtgtacataagcagtagcaacctaaactattctttttctttagtgagtttgttaaagctgctgtaagtataaaaccttgtcagaagttgtaactctttctctctataagtgatatgtattctaaagccttctgtttctatggattatacatggaaatcccttaaagcttttataaaggataaatattttgaatgattggaactctgtagggttgaagcctctgaaattggatggagggggagttgttgaagtttttaaaaaaattttttttgctagtttacttgctgcctcccataccttaatgtgattttcatatatatatttttatatatatgtgtgtgtatatataaacatatatgtatgtgttttgaagtacagcttccttttcttttatatttattagaatagtgctttaataattatagaaccatattggcaacatcttttatagaaatataatcatgtttattttaagaactgacaacttgtttttgctatcttttagtgcaataagcagttttaatggaaagctgtgtctgacatctttaccacagatagtgggagaaacaggcacctccataattttaaaagggcaaagtaatacagccttaatttcagaaggaaagttttgtaattttcaagtttaaagcatgtcttttaaaaatcataatgaaaatgaaggaagttaaatttcctcaatgagtctgacctttaatgttagaaataaagttgaactttgatttaaaaagtgacagtgaatagcttaagatttagaagatatttaaattctttgaaaatagatcatgtttattgaagaatcatactggttaggtgtccattttcatgtactaaaatcaatcaggaaaatgtaaaatgatattttaaaaatatttttgctaacatcaccagtgtaactttccttttaaaattagggttatggtgacaaaggaagttaggactttgatcattttaaatgagttaaatcactgaaatatgggaaaaagttttacaaaacttttgttttattgacttcacattaagatactaaaaagtattataaagctgtcaaaactgagctcatcagtaacattggattcaggggagctttgcactttgtaactcatgaaaattgcattttaattttttattttttgcactggttcagagtatagatattacagattgtttccagtgggcattgttgttaacctttcagaattccatctgcatgtgaaaacgaatggattagctctttattttctctcttacctataatccactcttattgccaatttactgtattttgagcctaaaatctgagcccgtgtcctccaacaggtatgaaatcttttgtccctctgccagaaaactaggaaagtactgtattttgtatgtctattatactgaagtgtctgaaatgcaatttacaacactgtttcaaagctctttacatgagatagtattgtatagtatatacattttttctcccaacactcccctcctccaaaatattcctataaagcacgtattttttttttaattgaaatgtcattgaatatagtcaggaacatgggcaagaggagaaaatagtatatcctagatggtaaaaacttgattgctctgtgcttgcttggtatgagtacaacatcttcctttatggttgagaggaagagttgcacaaattcacacaggaaactttagggcctgggaagaactgtagataacccttgccctatttactgctttacctaattttcagttacctggtttcacatacgctagagtgaagctcataatttaaatctatttggaaaaaaaaaaaaagattttttgaatataaagctttacctttgaagtgagttcttttttagggtttctttcttacggtttcaacattgctagtttaaggttggttaacttgaaagagtatatatagcatatttctattttgcttactaacaagttggtgtatcaaacttaattatgcgaaatcttgtgcttagaattttacgataaaagtctaagtggcaaatactttttgaaatttgttttaattattattgcacttctggtgtcaaattcttgatcattttatttaaaaaaaaaaagtttgttttgaatttaatagtcatgaaactcaacagtgacctttttgttcctgcccttgctcattaactatataatgaatgctaaattttggtttgctgttttctgtgatgtataagtgactttaaaatgtcagtctcagcaactggtataattgattttcatgtgaagaagagttgggagttaaatgtatattctggacggcaaatgtgtctgtgtaaagtgctgatacatgttattatcttacagtatcaagttactggcattgaggaccatacgtttataatactgtagctgctatatttatttaattaagtagagtctgacagttactgcactaaacaataaggagatgagcaggattcaaggctagtgttgtagatcccctttttttgttcctaaataagattaagaacgtgaactatcaaggtaacaatgggtgctgccattttagtttcagtttaatatcaggatactcttttttttgttttgttttataaatgtggattttgactttagcagttttgaaaaagggtacctcaacctcctcagtactgatttttggcatattttcacagaagtacagatgccctttattttttcttaatatttgccttttaacaagtttctcagaaaaaatattcttctatggaaatcttcctgtttataacctattaatttatttttcttcctagaagagagtctagaagggattctagtaggaatgtactgggtgttttggaaggcaattgataaagattcatctccaccttctagcatagggactcctagccttctaaagacctatactagtattccaaactagattctctgatgacccaccactgcctaatgtttacttgtatattctctagtggattttagtatggcgggcttagtcatgacagacttaaggaatgtctagggaaataaaaggtgacttgccattcagtagaaatggctggcaagaggatctcagtgtttaaagaaaaggtgaacactcagagtgccagtaatagatc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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