2024-10-18 15:48:23, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_058553671 6184 bp mRNA linear MAM 31-JUL-2023 DEFINITION PREDICTED: Diceros bicornis minor argonaute RISC catalytic component 3 (AGO3), transcript variant X4, mRNA. ACCESSION XM_058553671 VERSION XM_058553671.1 DBLINK BioProject: PRJNA998007 KEYWORDS RefSeq. SOURCE Diceros bicornis minor ORGANISM Diceros bicornis minor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Rhinocerotidae; Diceros. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_080752) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_020826845.1-RS_2023_07 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 07/26/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6184 /organism="Diceros bicornis minor" /mol_type="mRNA" /isolate="mBicDic1" /sub_species="minor" /db_xref="taxon:77932" /chromosome="13" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /geo_loc_name="USA" /lat_lon="32.1795 N 97.7972 W" /collected_by="Budhan Pukazhenthi" gene 1..6184 /gene="AGO3" /note="argonaute RISC catalytic component 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:131413135" CDS 185..2155 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X4" /protein_id="XP_058409654.1" /db_xref="GeneID:131413135" /translation="
MRKRFLLSSYRVPGTISATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 254..616 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(410..412,455..457,497..499,509..511,563..565, 584..586,590..592) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 749..2026 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1160..1162,1172..1174,1208..1219,1226..1228, 1250..1252,1259..1261,1271..1273,1283..1285) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1364..1366,1370..1372,1580..1582,1994..1996) /gene="AGO3" /note="active site" /db_xref="CDD:240015" polyA_site 6184 /gene="AGO3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
taacagaaatttttagttctgacacagtggaaagcaaatttaagaatcctaatctcttcttcatggaacatttctcccgtacaacctcttcaaggagttagtttacatcgacaaaaccgttttgcctagaattaagaccttggtaaatcagcaagcaaggacatgagtagacacttctgcaaaaatgagaaaaagatttctgttgagctcctatcgtgttccaggcacaatttctgccactgccttctacaaagcacaacctgtaattcaattcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggcacaatgaggcggaaatatcgtgtttgtaacgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagttgcgcagtatttcagagaaaagtatactcttcagctgaagtacccacaccttccctgtctgcaagtggggcaggagcagaaacatacctatctgccgctagaagtctgtaatattgtggcagggcaacgatgtatcaagaagttaacggacaatcagacttctactatgatcaaagcaacagcaagatctgcgccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggaatttcaatttaaagttcgagatgaaatggcccatgtaaccggacgagtacttccagcacctatgctccaatatggaggacggaatcggacagtagcaacaccaagccacggagtatgggacatgcgagggaaacaattccacacaggagttgaaatcaaaatgtgggctatagcttgttttgccacacagaggcagtgcagagaagaaatattaaagggtttcacggaccaactgcgtaagatttctaaagatgcaggaatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactctggcctccagctcattatcgtcatcttgccggggaagacaccggtatatgcggaggtgaaacgtgtaggagatacgcttttgggtatggctacacagtgtgttcaagtcaagaatgtaataaaaacatcccctcaaactctctcaaacctgtgcctaaagataaatgttaaacttggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgcgctacagtaagagttcagagaccccgacaggagatcatccaggacttagcctccatggtccgagaacttctcattcagttttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttaggcaggtattatattatgagctactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctatattgtagttcagaagagacatcacacgcgattattttgtgctgataggacagaaagggtcggaagaagtggcaacatcccagctggaacaacagttgatacagacattacacacccatatgagttcgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttgtgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttatgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtggcatttagagccagatatcatctcgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaatgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaaggccaagaatattctctgagaggaagaactgaaagatgaatcgacatacaacgtatgtttccagtggagtaattgagtggggatgcctccagctatacagaaaccaacactgtgtgggggccagggtctgatctttatgttgatacaaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttttgtgcggtctcctgtaggaagtatcgcagttgttttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaattatctttgcaaaaaaagtaaagaaaaagaaaatgatggtttaaaaaaatacacctacatgaataatcaaagtgattgttcacaattatgtgtgcaaaaaaaatgtgcattcatctattcttgtaaaaggtatctgtgtatattttaaatatatacatgcatacttcatatgcatatatatctggatctacattgataatagatatatatgtgtctctgtatatattttatagttcattccattggggaactttccttccctcttattatccccacaccaccacttttatttctctctctacctcccttgccttcatcacctacattttttttcctaatgctaccagtgacattcaaatgttcatgtatctggttcatttgaatatgaagcatgacaaactagattttaatttttattttgcacaccctactcctgtgtcttgtctcatacacaattctgaatcctcaactcttgatagtgctttcttaagaaacagaattattttatatatacatttgtttttgtgagagtatgtgtctgccccctcctgctctgaacttacatttgccatttgtgcaatgtgtacataagcagtagcaacctaaactattctttttctttagtgagtttgttaaagctgctgtaagtataaaaccttgtcagaagttgtaactctttctctctataagtgatatgtattctaaagccttctgtttctatggattatacatggaaatcccttaaagcttttataaaggataaatattttgaatgattggaactctgtagggttgaagcctctgaaattggatggagggggagttgttgaagtttttaaaaaaattttttttgctagtttacttgctgcctcccataccttaatgtgattttcatatatatatttttatatatatgtgtgtgtatatataaacatatatgtatgtgttttgaagtacagcttccttttcttttatatttattagaatagtgctttaataattatagaaccatattggcaacatcttttatagaaatataatcatgtttattttaagaactgacaacttgtttttgctatcttttagtgcaataagcagttttaatggaaagctgtgtctgacatctttaccacagatagtgggagaaacaggcacctccataattttaaaagggcaaagtaatacagccttaatttcagaaggaaagttttgtaattttcaagtttaaagcatgtcttttaaaaatcataatgaaaatgaaggaagttaaatttcctcaatgagtctgacctttaatgttagaaataaagttgaactttgatttaaaaagtgacagtgaatagcttaagatttagaagatatttaaattctttgaaaatagatcatgtttattgaagaatcatactggttaggtgtccattttcatgtactaaaatcaatcaggaaaatgtaaaatgatattttaaaaatatttttgctaacatcaccagtgtaactttccttttaaaattagggttatggtgacaaaggaagttaggactttgatcattttaaatgagttaaatcactgaaatatgggaaaaagttttacaaaacttttgttttattgacttcacattaagatactaaaaagtattataaagctgtcaaaactgagctcatcagtaacattggattcaggggagctttgcactttgtaactcatgaaaattgcattttaattttttattttttgcactggttcagagtatagatattacagattgtttccagtgggcattgttgttaacctttcagaattccatctgcatgtgaaaacgaatggattagctctttattttctctcttacctataatccactcttattgccaatttactgtattttgagcctaaaatctgagcccgtgtcctccaacaggtatgaaatcttttgtccctctgccagaaaactaggaaagtactgtattttgtatgtctattatactgaagtgtctgaaatgcaatttacaacactgtttcaaagctctttacatgagatagtattgtatagtatatacattttttctcccaacactcccctcctccaaaatattcctataaagcacgtattttttttttaattgaaatgtcattgaatatagtcaggaacatgggcaagaggagaaaatagtatatcctagatggtaaaaacttgattgctctgtgcttgcttggtatgagtacaacatcttcctttatggttgagaggaagagttgcacaaattcacacaggaaactttagggcctgggaagaactgtagataacccttgccctatttactgctttacctaattttcagttacctggtttcacatacgctagagtgaagctcataatttaaatctatttggaaaaaaaaaaaaagattttttgaatataaagctttacctttgaagtgagttcttttttagggtttctttcttacggtttcaacattgctagtttaaggttggttaacttgaaagagtatatatagcatatttc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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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