2024-09-08 11:10:30, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_058553661 6369 bp mRNA linear MAM 31-JUL-2023 DEFINITION PREDICTED: Diceros bicornis minor argonaute RISC component 4 (AGO4), transcript variant X2, mRNA. ACCESSION XM_058553661 VERSION XM_058553661.1 DBLINK BioProject: PRJNA998007 KEYWORDS RefSeq. SOURCE Diceros bicornis minor ORGANISM Diceros bicornis minor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Rhinocerotidae; Diceros. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_080752) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_020826845.1-RS_2023_07 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 07/26/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6369 /organism="Diceros bicornis minor" /mol_type="mRNA" /isolate="mBicDic1" /sub_species="minor" /db_xref="taxon:77932" /chromosome="13" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /geo_loc_name="USA" /lat_lon="32.1795 N 97.7972 W" /collected_by="Budhan Pukazhenthi" gene 1..6369 /gene="AGO4" /note="argonaute RISC component 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:131413133" CDS 270..2606 /gene="AGO4" /codon_start=1 /product="protein argonaute-4 isoform X2" /protein_id="XP_058409644.1" /db_xref="GeneID:131413133" /translation="
MEALGPGPPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSVQWVSVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEISQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQRGRQSCVRTEQRPRSSGLG"
misc_feature 345..734 /gene="AGO4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 765..917 /gene="AGO4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 918..1280 /gene="AGO4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1074..1076,1119..1121,1161..1163,1173..1175, 1227..1229,1248..1250,1254..1256) /gene="AGO4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1419..2546 /gene="AGO4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1830..1832,1842..1844,1878..1889,1896..1898, 1920..1922,1929..1931,1941..1943,1953..1955) /gene="AGO4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" polyA_site 6369 /gene="AGO4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cgcgctggctcctgctcccgctcccgctggcagcggcggcggcggcggggattgtttttgttgtcgctgaggccggaagagccgcaggagccgggtccctgtccccgggccgggcgccgccgccgccccctgcccagcgtccgcgtctccgcggcgcccccccccccagcgccaaaattccggagatcaagcgttacgcggcggcggcggcggcggggcccggagcgggaggcgccggggaccggggcgaggcggcccccgccgccgccatggaggcgctgggacccggacctccaaccagcctgtttcagccacctcgtcgtcctggccttggaactgttggaaaaccgattcgactgttagccaatcattttcaggttcagattcctaaaatagatgtgtatcactatgatgtggatattaaaccagaaaaacggcctcgtagagtcaacagggaggtagtagatacaatggtgcggcacttcaagatgcagatatttggtgatcggcaacctggctatgatggcaaaagaaacatgtacacagcacatccactgccaattggacgggacagggttgatatggaagtgacccttccaggtgagggtaaagaccaaacctttaaagtgtctgttcagtgggtatcagttgtaagtcttcagttgctcttagaagctttggccgggcacttgaatgaagtcccagacgactcagtacaagcacttgatgttattacaagacaccttccctccatgaggtacactccagtgggtcgttcctttttctcacctcctgaaggttactaccaccctctgggagggggcagggaggtttggtttggctttcatcagtctgtgagacctgctatgtggaatatgatgctcaatattgatgtgtctgcaactgctttctaccgggcccagcctatcattgagttcatgtgtgaggttttagacattcagaacatcaatgaacagaccaaacctctaacagactcccagcgtgtcaagtttaccaaagaaatcagaggtcttaaagttgaggtgacccattgtggacagatgaaacgaaaatatcgagtttgtaatgtgactagacggccagccagtcatcaaacttttcctttacagctagaaaatggtcaagctatggaatgtacagtagctcaatattttaagcaaaagtatagtctgcagctgaaatatccccatcttccctgtctccaagtaggacaagaacaaaagcatacatacttgccacttgaggtctgtaatatagtggccggacagcgatgtataaagaagctcacagacaatcagacttccacaatgatcaaagctacagcaaggtctgctcctgacagacaggaagaaatcagcagactggtgaagagtaacagcatggtgggtggacctgatccataccttaaagaatttggtattgttgtccacaatgaaatgacagagctcacaggcagggtacttccagcaccaatgctgcagtacggaggccggaataaaacggtagccacgcccaaccagggtgtctgggacatgcgaggaaagcagttttatgctggcattgaaattaaagtttgggcagttgcttgttttgcgcctcagaaacaatgtagggaagatttactaaaaagtttcactgaccagctccgtaaaatctctaaggatgcaggaatgcccatccagggtcagccatgtttctgcaagtatgcacaaggtgcagacagcgtggagcccatgtttaaacatctgaaaatgacatatgtgggcctacagctcatagtggttatcttgcccgggaagacaccagtatatgcggaggtgaaacgtgttggagataccctcctgggtatggccacacagtgtgtccaggtaaaaaacgtagtgaagacctcacctcaaaccctttccaacctttgcctgaagataaatgcaaagcttggaggaattaataatgtgcttgtgcctcatcaaaggccctcggtgttccagcagcctgtcattttcctgggagcggatgtcacacacccgccggcaggggatgggaagaagccttccattgccgctgtggttggcagtatggatggccaccccagccggtactgtgccaccgttcgggtgcagacctcccgccaggagatctcccaggagctcctctatagtcaggaggtaatccaggaccttactaacatggttcgagagctgctcatccagttctacaaatccacacgcttcaaacccactcggatcatctattaccgtggaggagtatccgagggacaaatgaagcaggtagcttggccagaactaatagcaattcgaaaggcctgtattagcttggaagaagattaccggccaggaataacctacattgtggtacagaaaagacatcacacacgactcttctgtgcagataaaacagaaagggttgggaaaagtggcaatgtaccagcaggcactacagtggatagcaccatcacccatccatcggagtttgacttttacctctgtagtcatgcaggaattcagcgcggaaggcagtcatgtgtcaggacagagcaacggccgagatcctcaggccttggctaaagctgtgcagatccaccatgatacccagcacacaatgtattttgcctgagagtctcagaaaaagaactcgaccaatttggcaccccagcctcaaaatgtttcaaatgcctaccgcctctagagagagccaagttgacttcaggtggtcttctaccagcagctcggaatagttgcactgaatctatacttcgcagcactgtctgatgcgtcaacaaaattgagccatttttttaaagtaatagctactcatagattgtcttttctgatgcactggactgaatttttacctcaacttgcaaaggctgatcagcctgaactttctaagggactttacaagaaaggtttctatggaatattttgctagctgtggtgttcaccgcatccctctagtcttataagagattattccttttttctgtattcattgagtggggtgtttgcataagtgggagagaaaaaccaaacaatctatttcagttcagcgtaactatttaattgtgtgggtccatagactttttaatggaggtttccgacttcgccactcgtaaatgcctttaacgagcattaatttttgaaagttttacagagttttattagttttactactttatcttattgatctctacagacttgtgctggtgtaagtacgggctgccaggcaattgcactatatgtggctgcagattcagacaggcagatcttttatttggttgacttttgtgaatgtgtaatgcaaacagatgtgacacacatcacagtgacagatacactgccatggcaaaagtactcacactttcccctctttggaaaaaaaaagttagcttttagtatttttcaaagttttcaaaagtgcccattttatgctgctgtgtggtttgttagatctaaatgatttttaaacttttctcatagaaagttacctttggcaataaacgttttttaaggtccctcctcttcctcccccaacagtatagttttctagatgagatttcggtatgattttatcagctatttcttatagatcataatctggcaatttctgaaaccggtcagaaaagacatatatttccatgcctttttaaaaaattatttttatctgttttatagtcacagttggtgtcctgtcactttgttttaaaataagctagaaccaggatgcttccttatcggataggcttcgccaatccttaaggtatattgagtgatgctgcaacttgcaaaaatgtaccagcattgaaaactttttttcctgggaatcaaggttactcgcacaattatttgtggtgcaaattttttgcttctctttcaacctgaaatgtgcttggtggggttcccttccttttattaaactaaaactgcacagaaaaggttgatttttcttaatagattctggattctgttcacagagagacaggattcctttcttgtccaaacaaagggagttgatctaaagcaagcatcagttaaagtgtaggggaaaatgtattttgtatttagtgtagataatactttgtgaatggacgacagttacatagagtcttggtagttccagccggtgtttcctagcccagattttactgacttgtaattctctgtcctggaacctcagaagtgagagctggaaaaggggatgaaaggcccagagccacactccatatggctgaggaaggtgctaggggaagagacagacacaacgtggtaaaacgatttgccacctctttctggaaactgctggtggggaaacactggatctgatggtgaaaggtgtttgcttgaactcattagccagtccaaatctcttaaactagccttttcaaaatcccagcaatataaagcactgtttttcttcagtcttttaaacatgcttgtaaatatattgaggtttacatttccatgtgctgctgatcagtggcgccaccagtgtttgctgagactggtctctgagagttttataatgtgtatcaagtcctctagctcattaagatgagtgcagacgtccttatcctccgcagatagtgggatgaaagcaagctttgtaattgaggcacaacataggcaggagtgaaggtggcagatgttaatttcttaaaattttccttttttgcaaatacctcacttggatactccaaatcaggacatgttggtgaggggttggctgctgcttttattcacacttgttcagggagagcacaagatacccttcagcatggccaccctggacccaagaggaggaaagaaacagaagcttttttaggaggaagaggactcactggagtccaggatgtgaagaactcgtggtggctggcagccgggccagcgggcaccacacctgcacttgagtgcctggggcttgcttgttaataacgcacagaagaaacgtcacttctcaccatctggcatgtatggagcagggagcaaggcgggaagccctgatttgcttgcctgcagttgggctatacgcttgacttgaactctacagtttgtacgacctcagtcagtcgtagtacactggggcaaatcagtgtggtggtggaggaaaagccgggaggcctatttttataggaaaacagtacctttaaaggtgcaatgctgtcatttggaacgaaagaaagaaatatggaagaactaggattattgggaaaagtttgctgaggggtgaatctttaagaggtaatcactgcagaatgagagttgcagcagtactattgcaggcaagtctgaatgcatagttttaatttggcttgacaatttgagaacgtaaccccttgggactgactgaatcgttatgcatgtgtcaatcaatgggaggtgtgcattctctagaagtaggtttaggctgtttggttttttaaaacacagcctgtttaggcactgtcatgtggtgtgaaagacttaaatgtagcaatgctaaagagtaacaatttggggataaggcgtggggacattaagagtggtgaagatccaaatgttgaaccgattatgtttgttgttgttagctgttgaaacctgagtggtttataaagtgaactagctggttaatacaaccagcagtctgggcaggcaggacatattcagtcttactgtaaattctatttgctgcttccaaaggtggtgatttacaagcagacatattctataggtctgtattttaggatctggtgcccagcctatatcacagcttacctacgtggctcagctgcctaccctttttgtgggaaaaggtaacccactgtttaacaaggctcaccctctccgccctgtgctagctaccctttatggatgtgctgtaagattttcttgctcaatagcaaggcggtagctctgctttcattttaagaaagtggagactgagggcattgtatcaatactgcttcaactccaaggattttttccttgtaaaattaaagggaagatcttattattgattaaccattttcttatcccttgctattgacgtattcatgctctttctatgtctagtggctaaaaagtttgcatttgttcatttgactaacagtgtaattttttttgtatattgttaggcctgtaatgttttaaaatgtgttttattaaatttggactggatgtatgtctctagcaatacgaggtactttctaaactattaagagagaggtggtatccccatgttgagataagatgatggttgtttaaattttgcaattttttttggcctgcagggatattttgtgttcatgtgtccaaaaaagaataaattggcattcttgtaccaaaagttgttttt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]