2024-05-03 13:22:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_058483271 3699 bp mRNA linear PLN 27-JUL-2023 DEFINITION Lichtheimia ornata uncharacterized protein (O0I10_003199), partial mRNA. ACCESSION XM_058483271 VERSION XM_058483271.1 DBLINK BioProject: PRJNA999184 BioSample: SAMN32099705 KEYWORDS RefSeq. SOURCE Lichtheimia ornata ORGANISM Lichtheimia ornata Eukaryota; Fungi; Fungi incertae sedis; Mucoromycota; Mucoromycotina; Mucoromycetes; Mucorales; Lichtheimiaceae; Lichtheimia. REFERENCE 1 (bases 1 to 3699) AUTHORS Mohabir,J.T., Shea,T.P., Kurbessoian,T., Berby,B., Fontaine,J., Livny,J., Gnirke,A., Stajich,J.E. and Cuomo,C.A. TITLE Genome sequence of Lichtheimia ornata CBS 291.66 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3699) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (27-JUL-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3699) AUTHORS Mohabir,J.T., Shea,T.P., Kurbessoian,T., Berby,B., Fontaine,J., Livny,J., Gnirke,A., Stajich,J.E. and Cuomo,C.A. TITLE Direct Submission JOURNAL Submitted (31-MAR-2023) Infectious Disease and Microbiome Program, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026695330). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3699 /organism="Lichtheimia ornata" /mol_type="mRNA" /isolate="CBS 291.66" /isolation_source="bird dung" /culture_collection="CBS:291.66" /type_material="culture from type material of Absidia ornata" /db_xref="taxon:688661" /chromosome="Unknown" /country="India" /collection_date="1961" gene <1..>3699 /locus_tag="O0I10_003199" /db_xref="GeneID:83210612" CDS 1..3699 /locus_tag="O0I10_003199" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_058345890.1" /db_xref="GeneID:83210612" /translation="
MTTHDNTTIVLPVKGMTCNSCVRSITNALDLDEGVHKAQVSLENESATIHYDPTIRTRQQLVELIEDCGFEVPDTIVTTTLPVKGMTCQSCVKSITSVLVDLAGVQSVDVSLEEEQATIMHDTSLLSRETIIEAIEDCGFDVPTTTQSSNSNTTTVLPVKGMTCQSCVKSITGALSGLAGAEYVDVSLDAEQATVIHDASLLSRETIIEAIEDCGFDVPLLNTNNNSNSSSSKKNEPGVAEIQVATSSSGADDDKYDSIQTAQLEIHGMTCASCVNSIERAVNSQAGIISIKVSLLAEKATVEYDPSVITDEQKIADMIEDVGFEAKVVQPKSDDTVQLQVFGMTCASCVHSIERGVSKVPGVHSITVNLMTEMAVVRYDHTRLGMRTIVETIEDLGFNALVHDNTRNAQLDSLSKVREIQEWRQACIRSVLFAVPVFFIAMVMPMFPWGNSILDIPLFFDGLYLMDVVQLALTIPVQFGVGKRFLVSAYKSLRHGSPTMDVLVSISTLAAFTFSVISMFRSLCAHSTHRPTVFFDTSTMLIAFISGGRLLENMAKGQSSSALSKLMSLTPSTALMLEVDEHTGNIISEKRIPSELIQQGDLLKIVSGDKIPADGTVTSGASTVDESMVTGEVDAVSKKEGDTVIGGTVNGPGMFVMKATRVGSDTALSQIVKLVEDAQVSKAPIQGFTDVVAGYFVPAVLLLGLGTLVIWSLLVTFLGIDRMPPMLQSEIENDGDGSWFFVCLKMCISVIIVACPCALGLATPTAVMVGTGVGAENGVLFKGGAVLENGQRVNTIVFDKTGTLTIGKLQVTRAESWSDTQLSSDQLLLLAAIAESQSEHPVGRAVVQKGKDLTGLDLLDNLAAISGFKSETGFGIECDIAITEDDDDHSAILRSLAMKGGASHRIVIGNQRFLEEFHSMKLSSEQARAIEAEEAQGHTCITVGWDGVAAGYIALADVLKPESRQVVATLHMMGLHTAMVTGDNVLTAQSIAKQVGITEVHAGVSPNGKTQLVQQMQRREMVSSNVFGSKRSRAVVAMVGDGVNDSPALAAADLGIALCSGTDVAIEAADVVLMRSDLSDVVAALVLSRAIFRRIKINLLWACIYNVIGIPLAMGVFMPLGWHLHPMLAGLAMAASSTSVVVSSLLLKWFWRKPTLVSEDQVDFAAPSTTIAIEEPLTPIDNATPIKASTTSIWSRIWNQLIGNGRFGGYQAVATDTNQDFDLQTLPLHQRL"
ORIGIN
atgacaacacatgacaacaccaccattgtgcttccagtcaagggcatgacgtgtaattcttgcgtacgttcaatcaccaatgcacttgatctcgacgaaggagtccacaaggcacaagtcagcttggagaacgaatcagctaccatacactatgacccaacaatacgtacacggcaacagcttgtggaacttatcgaggattgtggatttgaagtgcctgatacgatcgttacaacaacacttcctgtcaaggggatgacttgccaatcatgtgtaaagtcgattacaagcgtattggtggaccttgcaggcgttcaatcagtggatgtcagcttggaggaggagcaagcgactattatgcatgatacatcattattatctcgcgagacgatcattgaggccattgaagattgtggattcgacgtgccaacaacgactcagagcagcaacagcaatacgacaacagtacttcctgtcaaggggatgacttgccaatcatgcgtcaaatccatcactggtgcattgagtggtcttgctggtgccgaatatgtggatgttagcttggatgctgagcaagcaacagtgatacatgatgcgtcattgctatctcgtgaaacgattattgaggctattgaagattgtggattcgatgttccattactcaacaccaacaacaacagcaacagcagcagcagcaaaaagaatgagcctggcgtggctgagattcaggtggctacgagtagcagtggggctgatgatgacaaatacgacagcatccaaaccgctcaattggaaatccatggcatgacatgtgcttcttgtgtcaatagcattgagcgtgcagtcaatagtcaagccggcatcatctccatcaaagtatcattgcttgctgaaaaggcgactgttgaatacgatccttcagtgattacagatgaacagaaaattgccgacatgattgaagacgttggattcgaagccaaggtggttcagccaaagagtgatgatacagtgcagctacaagtatttggaatgacatgtgcaagctgtgtgcatagcattgagcgtggtgttagcaaggtgcctggtgtacattcaatcacggtcaacttgatgactgagatggctgtggttcgatatgatcatactcgtcttggtatgcgtacaattgttgagacgattgaggatcttggtttcaatgcattggtccacgacaatacccggaatgcacagcttgatagcttgtccaaggtgcgtgagatccaagaatggcgacaagcttgtattcgcagcgttctttttgcagtgccggtctttttcattgccatggtgatgcctatgtttccatggggaaattcgatcttggatattcctttattctttgatggactttatttgatggatgtcgttcaactagcactcaccatcccagtccaatttggtgtcggcaaacgattcttggtatcggcatacaagtccttacgtcatggatcacccaccatggatgtccttgtttcgatttcaacacttgctgcattcactttttcagtcatttcgatgtttcgatctttatgtgcacattcaacgcatcgacccaccgtgttctttgatacatccaccatgttgattgcattcatttcaggaggtcgtttattggaaaacatggccaaaggacaatcttcttcagccttatcgaagttgatgtctcttacaccttcgacagcattgatgcttgaggttgatgagcacactggcaacattatttcggagaagcgtattccttcggagcttattcaacaaggcgatttactcaagattgtgtctggtgataagattccagctgatggtactgttacatcgggcgcttcgacagtggatgagagcatggttacgggtgaagtggatgctgtatccaagaaggaaggtgacactgtcattggtggtacagtgaatggccccggcatgtttgttatgaaagctacccgtgtcggctctgatacagcactcagccaaattgtcaagctcgttgaggatgctcaagtaagcaaggcgcccatccaaggcttcaccgatgtggtggcaggctattttgtaccagctgtgttgctccttggtcttggtactttggtgatatggtccttgttggtgacgtttttgggtattgatcgtatgccgcccatgctgcaaagcgagatcgagaatgatggtgatggcagctggttcttcgtatgcctcaagatgtgtatcagcgtgatcattgtggcatgtccctgtgctcttggcttggcaactccaacagcggtgatggtaggcacaggcgttggcgcggagaatggtgttttattcaagggtggcgctgtgctcgagaatggtcaacgtgtcaacacgattgtctttgacaagactggtactttgactattggcaagctgcaagtgactcgtgccgagagctggagtgatacacaattgtcgtcagatcaattattgctacttgccgccattgccgaatcacaaagcgagcatccagtgggtcgtgctgttgtacaaaagggcaaggatcttacgggtcttgatttgttggataatcttgcagctatctcaggcttcaaaagcgagactggatttggtatcgaatgcgacattgctatcaccgaagatgacgatgatcattcagcaatcttacgcagcttggctatgaaaggaggagcttcacatcgcattgttattggcaatcaacgatttctcgaagagtttcacagcatgaaattgagttcagagcaagctcgtgcgatcgaggctgaggaggcgcaaggtcacacatgcattactgttggatgggatggtgtggctgcaggctatattgctttggcggatgttctcaagccggagtcacgacaagtggtggcaacattgcacatgatgggattgcacacggctatggtgacaggtgataacgtgttgacagcacaatcgattgcaaagcaagtgggcatcactgaagtacatgctggcgtttcacccaatggcaagacacagctggtgcagcaaatgcaacgtcgtgaaatggtgagctcgaatgttttcggatccaagcgttccagggctgtagtggcgatggttggtgatggtgtcaatgattctcccgcattggcagctgctgatttgggtattgcactatgcagtggcactgatgtggcgattgaggcagctgatgtggtgctcatgcgcagtgatttatcggacgtggtggctgctctggtcttgtctcgtgccatctttcgacgaatcaaaatcaatttgttgtgggcctgcatttacaatgtgattggtattccgcttgcaatgggcgttttcatgccgctcggttggcacttgcatccaatgcttgctggcttggccatggcagcaagttctacaagcgtcgttgtcagcagccttttactcaaatggttttggcgtaaacctactcttgtttcagaagatcaagttgactttgctgctccctcaactactattgccattgaagagcctctcacccctatcgacaatgctacccccatcaaggcatccaccaccagcatttggtcacgcatttggaatcagcttattggaaatggacgatttggtggatatcaagctgtggccactgatacaaatcaagactttgatcttcaaactttaccattgcatcaacgactgtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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