2024-05-20 10:50:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_058422498 2793 bp mRNA linear VRT 25-JUL-2023 DEFINITION PREDICTED: Hirundo rustica keratinocyte proline-rich protein-like (LOC131378652), mRNA. ACCESSION XM_058422498 VERSION XM_058422498.1 DBLINK BioProject: PRJNA713843 KEYWORDS RefSeq. SOURCE Hirundo rustica (Barn swallow) ORGANISM Hirundo rustica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Hirundinidae; Hirundo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_053463.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_015227805.2-RS_2023_07 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 07/19/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2793 /organism="Hirundo rustica" /mol_type="mRNA" /isolate="bHirRus1" /db_xref="taxon:43150" /chromosome="14" /sex="female" /tissue_type="muscle" /dev_stage="adult" /country="Italy" /collection_date="22-May-2018" /collected_by="Giulio Formenti, Nicola Saino" gene 1..2793 /gene="LOC131378652" /note="keratinocyte proline-rich protein-like; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:131378652" CDS 534..1598 /gene="LOC131378652" /codon_start=1 /product="keratinocyte proline-rich protein-like" /protein_id="XP_058278481.1" /db_xref="GeneID:131378652" /translation="
MSSGGSWVGARQCRDCPCPCPCPCPCPCPCPCVPVSLSLSLSLCPCPSPCPCPSPCPCPCVPVPVPVPSLSLSVSLSLSLSHPCVPIPVSLSLCPIPVPVPVPVPVPVPVSHPCPIPVPVSQSLSHPCVPVPVSLSLSLSLSLSHPCPIPVSLSQSLSLSLCPCPCVPVPVPVPVPVPVPVPVPSLSHPCPIPVPVPSLCPIPVPSLSHPCPCRARGIPGEVRTQNSSKPARAGTPAAPVLSSCPLPSSPLSWGSRGVAEAQQGGTELLHPCWLLPGARTLPGEEQLHVFSRKTIGNVCCPLAAAPAELWRSSGWVSWPRRIPRSCSGAGPEPLPCCATPRERDVEPRAVPSLP"
polyA_site 2793 /gene="LOC131378652" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gcagcagaggacgccctgaaggggttcccagagatgccgggggtatttcaggagtgatgtgcgggtacctgagcaagccaggagctgtcattcctgtgccgggaatgctccttccccctgtcccaccagtcctctttccccacagggtaaacagctggaagtgttgagctcactgccagaggctccagacagacactttgtgccacacgacatcccgggacaccttaatgactcctctttagcttaatgaacctctaacaaccggcgccgcctgctcttgctgctcttgctccactctgggacggccgcaggacacggaggaaggtacacggttttacacaatgggcaccaccaggagcaagagaagcttcccatccacaccgaccccgagtcccaggagtcctgtttctagtcctggcccagcagaggaagaacagaggccttgtaggatattccaaggattcaccgacagcaggacttgaaaattcatcgctctgcatcctcgtggtgcctcctgcagtggatccccaggaatgtccagcggtggcagctgggtgggagcacggcagtgtcgggactgtccctgtccctgtccctgtccctgtccctgtccctgtccctgtccctgtgtccctgtgtccctgtccctgtccttgtccctgtgtccctgtcccagtccctgtccctgtcccagtccctgtccctgtccctgtgtccctgtccctgtccctgtcccatccctgtccctgtccgtgtcgctgtccctgtccctgtcccatccctgtgtccctatccctgtgtccctgtccctgtgtcccatccctgtcccagtccctgtccctgtcccagtccctgtccctgtgtcccatccctgtcccatccctgtccctgtgtcccagtccctgtcccatccctgtgtccctgtccctgtgtccctgtccctgtccctgtccctgtccctgtcccatccctgtcccatccctgtgtccctgtcccagtccctgtccctatccctgtgtccttgtccctgtgtccctgtccctgtcccagtccctgtccctgtccctgtccctgtccctgtcccatccctgtcccatccctgtcccatccctgtccctgtcccatccctgtgtcccatccctgtcccatccctgtcccatccctgtccctgccgtgccagaggcattcctggtgaagtcaggacacagaacagctccaaaccagcccgtgcagggactcctgctgctcccgtcctttccagctgccctctgcccagctcacccctgtcctgggggtctcgaggggtggctgaagcccagcagggtgggactgagctgctccatccctgctggctcctgcctggagcccggacactgccaggggaggagcagctccacgttttctccaggaaaacgataggaaatgtttgctgccctttggctgcagcccctgccgagctctggagaagctctggttgggtttcctggcccaggaggattcccaggagctgcagtggggccggcccagagccactgccctgttgtgccactcccagggagcgggacgtggagcccagagctgttccgtccctcccctgagcaaactttgggcatttggaggccgcaggaagctcgggctggagccagagccggtctgtagtggatcaccaagtgccagccgggaaaacaaaccatctaaacccttttctagccacgtttggaagagagaacttctgcttacctccgccacctttatttttctattggttgccggtctcttccagctgaggcgagaactttccagagaagttttccagactttcccggctcagcactggcgcagctctcggtcctcagccgcctcccgcacgccgctgtcgcccctcctgagctgctccccctcgcatggagagggcgggcaaggctccaaactccaccagcctgggagaaggattttcctgcaggatggagaccacgagcctcgaccctttttaggggaagctccaccccagagatgccaccctgagcctagaaagtaaaactgtgctccgtcagacggcgcaaccgtgtacagatatttttaatgtacaaaggaaaagctgacattatttattattttttatcaggaacgtgtggggtttttttttcattaaaagcttctcgaccaaggagcttaacatcctatgtgttattatttagtaatatttctgttgctatgtgacaggtatttactgtaaacagacaaatcctgctcagaacaaacaaaaatgttgctcagtaggaagaatattgtgcatgaaaaagaagaagcggcttcctggccacggtgtctgactcctttaaatacagcaaagtcactgacaaagcttcacatccttgtcctttaggattcagaaggacactgggcagaaacagccccaaaaggaagaccaaggtggaaaattgctggaaaaacagaaattattgatgtttgtggtggaaggtgctcctggttcatcaccgggacctggctggcaatgatctgtctttagagggttttgtttccaaaagaattcattcagttttactcttgacaccagaacagtgagtgaaaaaaagccattattgaaagtttgggaaaaaatccatccagggctgcctcagtcctgtgatcccccctctgtggaagcgcccacgggggttttgttggggtttgggcacacaaaccttggcttggtttcacctcaagtgtcaaatttcttaaaagaaatcctaaaataaagcttttctctgtccccactgaagggcatcaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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