2024-10-18 15:10:02, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_058377107 5748 bp mRNA linear VRT 23-JUL-2023 DEFINITION PREDICTED: Hemibagrus wyckioides argonaute RISC component 1 (ago1), mRNA. ACCESSION XM_058377107 VERSION XM_058377107.1 DBLINK BioProject: PRJNA996633 KEYWORDS RefSeq. SOURCE Hemibagrus wyckioides ORGANISM Hemibagrus wyckioides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Hemibagrus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_080732) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_019097595.1-RS_2023_07 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 07/20/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5748 /organism="Hemibagrus wyckioides" /mol_type="mRNA" /isolate="EC202008001" /db_xref="taxon:337641" /sex="female" /tissue_type="blood" /dev_stage="sexual maturity" /linkage_group="LG23" gene 1..5748 /gene="ago1" /note="argonaute RISC component 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 Proteins" /db_xref="GeneID:131344658" CDS 435..3011 /gene="ago1" /codon_start=1 /product="protein argonaute-1" /protein_id="XP_058233090.1" /db_xref="GeneID:131344658" /translation="
MEPGPSGAVPMGLYPPPLQQVFQAPRRPGMGTVGKPIKLLANYFEVEIPKMDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQLFGDRKPVYDGKKNIYTVLALPIGSEKVDFEVTIPGEGKDRIFKVSIRWLAKVSWRLLQETLVSGRLQVPLDSVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKTLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNANFNLDPYIQEFGIKVRDDMAEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKSERIGKSGNIPAGTTVDTSITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 537..929 /gene="ago1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 957..1109 /gene="ago1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1110..1472 /gene="ago1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1266..1268,1311..1313,1353..1355,1365..1367, 1419..1421,1440..1442,1446..1448) /gene="ago1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1605..2882 /gene="ago1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2016..2018,2028..2030,2064..2075,2082..2084, 2106..2108,2115..2117,2127..2129,2139..2141) /gene="ago1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2220..2222,2226..2228,2436..2438,2850..2852) /gene="ago1" /note="active site" /db_xref="CDD:240015" ORIGIN
ggaggaggagaaggaggaggaggaggatgaggagggtgtttcagggggagaccgattgcctgcctgactgtttgaccgttttttgttgttgttcctctggagagtcgtgtttggacggtgagcaggaacataaacaggaagaaaaaaagaagaagaaggaggaaaaaaagccctagcgatatctccagcggaaacaagaccgcagtctggaggagagggagaaggagaaagcagccgaaggggagctattgtgttcggggtccgtggagggctccgactcgggggttcagccgggagagggggggggataaagagccgctaggacgccgaaggaaggagcctgagagtcggacacgcttccaggctcgccgccgtggcgatttaactgttccggagaataacgttaaagccgcgggggagcctgagtgaatgggatggagccgggaccatctggagctgtgcccatggggctgtaccccccgcccctgcagcaggtcttccaggctccccggaggccgggcatgggcaccgttgggaagcccatcaagctgctggctaactactttgaagtggagatccccaagatggacgtctaccactacgaggtggacatcaaacccgacaagtgtcctcgtcgagtcaacagggaagtcgtggagtacatggtacagcatttcaaacctcagctcttcggcgaccgcaagccggtgtatgatggcaagaagaacatctacaccgtcctggctcttcctataggaagcgaaaaggtggacttcgaggtcaccataccaggtgaggggaaggaccggatctttaaggtttcgatccgctggctggcgaaggtgtcatggaggctgctgcaggagacgctggtgagcgggcggctccaggtcccgctggattcagttcaggctctggacgtggccatgagacacctggcatccatgaggtacactccagtgggccgctccttcttctctccccctgaagggtactaccatcccctgggaggaggtagagaggtctggttcggcttccatcagtccgtacgcccggctatgtggaagatgatgcttaacattgacgtgtccgccacggctttctacaaagcccagcctgtcatcgagttcatgtgtgaggttctggacatccgcaacatcgacgagcagcccaagaccttaaccgattctcaaagggttcgcttcaccaaggaaatcaaggggctgaaggtggaggtgacgcactgcggtcagatgaaaaggaagtatcgtgtgtgtaacgtcactcgccgtcctgccagccaccagacgttccctctgcagctggagagcggacagacggtggagtgcacggtcgcgcagtattttaaacagaagtacaacctgcagctgaagtaccctcacctgccgtgtctgcaggtcggccaggagcagaaacacacctacctgcccctggaggtgtgtaacatcgtagcagggcagagatgcatcaagaaactgaccgataatcagacgtccactatgatcaaagccacagcacgctcagcaccggacaggcaggaggagatcagcagactgatgaagaatgctaattttaatctggacccctacattcaagagtttgggatcaaggtgcgggacgacatggccgaggtgacgggtcgagtcctgccggctcccatcctgcagtacggaggcaggaaccgagctatcgctacacccaaccagggagtgtgggacatgcgggggaaacagttctacaacgggatcgagattaaagtgtgggccatcgcctgcttcgcccctcagaaacagtgtcgtgaagaggtgctgaagaacttcacagatcagctacgcaagatctcgaaagatgccgggatgcccattcagggtcagccgtgtttctgtaaatacgcccagggagccgacagcgtggagcccatgttcagacaccttaagaacacctactccggtctgcagctcatcatcgtcatcctgcccgggaagacacctgtctatgcggaggttaagcgtgtaggagacactctcctaggaatggccactcagtgtgttcaggtgaagaatgttgtgaagacgtcaccgcagaccctctccaacctctgcctgaagatcaacgtcaaactcggcggcataaacaacatcctggtaccacatcaaaggtccgcagtgttccagcagcccgtcatcttcctgggtgcagacgtcacacacccaccagccggagacgggaaaaagccctccatcactgcagtagtaggcagtatggacgcccaccccagtcggtattgtgccacagtgcgtgtacagaggccgaggcaggagatcatcgaagatctctcctacatggtgcgtgagctcctcatccagttctacaagtccacccgcttcaaacccacccgcatcatcttctacagggacggcgttcccgaagggcagctaccacagatcctgcactatgagcttctggccatccgggacgcctgcatcaagctggagaaggattaccaacccggcatcacctacatcgtggtgcagaagcgccaccacacccggctgttctgcgcagacaagtcagagaggattgggaaaagtggcaacattccagcaggaactacagtcgacaccagcatcacacaccccttcgagtttgatttctacctgtgcagtcatgcaggaattcagggcaccagtcgcccgtcacattactacgtgctgtgggacgacaatcgcttcaccgccgacgagctccagattctcacctaccagttgtgccatacgtacgtgcgctgcacacgttctgtctccatccccgcacccgcctactacgcccggctcgtagccttccgcgcccgctaccacctggtggacaaagagcacgacagtggcgaaggaagccacgtctcaggtcagagtaacggccgagacccccaggctctggccaaagcagtgcagattcaccacgacaccctgaggaccatgtacttcgcctgagagccctgacctggcgccgacatcgaagagcctcgtccacctccctgcgctcgagccagtacacactacaaatccctctcacctcaacaaacagaactaacacagcgtcgtgccctaacctggcaggactgagcctcgtttacttttcgttcttgttgttgattgattgattattttttgtttgtttttaaaaagtgtatcgttgtttactaccttcacaccgtatgtatgtatgttcgtatgcaatacggaggagaagcaaaggcacaaacccacccgaagagctgactgccaatacggcgcttcgtcatttctcgcatcagtgttcaacggaggaaaagaaaaagcgagcgtcgaacaccttggtgttgttttaatggacaattttttttttttttaattgtgtttttattttttgaacagccttgaatgaaatattttagcacttagagttagcttttagacacaggcgtctccccttagctctcgtctctgtacttcggaccgtagcgcgtcggcggatgctggagagacgcagcgctctcgagtgtagccgatcttatttagacgtgcctccgtagtcaggggcggcactagcataacgatagatagtgtttcttttttatggaagtccaaaggggtcatacttttttttattattatttactttttctcgatcacacaggcagctttaagctccactgcatgccgcatagataaggctaggtataaggctgaagtggtagctatcgagttaaaggtagtagttcaacccgaatcaaatgtcgattgttatttcctcccaaatctagtcaaatgatccgtaatacgtgtgacgacgactttagatttgccctgatgctctgaggctaatgtagctaaaaaaaaataaataaatgaaagaacgcttatagcctccgctttagcatcgtgcaaaacgcagatctggataacaaaagaatcagactttggtaggagattttaaaggtggagttatttttgaggtaaaaggggaaatccggtacattttattcttcggatcaaaacatcagggtacacacccttgttcacaccctgtgtttcgcattggagttaaatccagggcgtattcctgcctcacacccagtattcccaggatagactccacctaaccaggataaaccattctgatgaatgactgattaaatgtttcactaatatacaagatagctagctcgttttatttctaagattttgtccatttcccaattggaaatctcggtattcccagtcagggaaccccaaaaacatggcctctatggacttccatacatttaagctaagttccttctacgtgcgcaacacagaaaaccagcattctgaaccagccaaatgtgatgccgaccattcagagaggcacttatctgtttttttgaaatgtgcatctgtttagagtctgtatgtgaggaaattgaaagtgcagcattctggcacgctgtagataaataagagagagagagagacgcaagatcacacacacacacgcaaatctttccttcctattccacaagagccttccagcatctctaaactggtctgtactcaaagcaatacaaggtcttttcacagtggacgtgaacgctctctgctcacgctgcacattccacacaccaagaaggacgtgacacacttcccctcccgccttctctcattcttacgctaactcaaaggacacaggaacatcgggtttttttgttttttttttagtattgttgtgagtacacaccgtgtagctgcccaccaccacctcctacgtagaaagctctgccgtcgggtcgggtcacgcacaacccacccatcctacacacaccctacacacacccacacacccacccacaccacagccttatgattaagaagtcacatccttccacgtagcagccatggtacatacacacctacatatctgcctggatttctgccagatgtgtaccatgtacacagaaatagttgaaaacgggaatttttattattgtttttggttattttttttacccatccatgtcatcgtggtttcatgtattgcatgttttaaatcgtgacccggatccctcagtatccatgctctcttatgttttctagttgttttattaatcgttaactgcacttgttgccccttcggttccttttccgaggggggtcactgtaaggggaggtgggtgggggtggtgtcttcgctttcactttcacttattttttagcctcaaaaagcacctcaaaacaaacatagggtccatcggaattccaaagggatcttggttatgtaatggttgaataggtttacttttcgtttttcttttattaaaaaaaaaatgagtattatgtttcagccaactcgaaatgtatttataacttgaaatggccgctgacggttgggcctatagaattgtgagggctctgatctgatctggtctggtccgatccagcagttttatatcatgatgcagtacttaaactcacaaatcaaatgagaggggagagaaaagaaagaagaaaaaaaaaaaacaagcccctttagacccaaagagaaggaactggagatggaacttgactcagcctcactataaaagcaatacaaagccactgcaaaacgacggcccttatcttagcacttcccaacaggctgattcggaagtacacatgaacaaagttattttggctctgtaatgtaatagtgttggggggagggttatttttt
//
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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